Strain Fitness in Rahnella sp. WP5 around EX31_RS07205

Experiment: L-Serine (N); ShewMM media; shaking

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS07200 and EX31_RS07205 are separated by 135 nucleotidesEX31_RS07205 and EX31_RS07210 are separated by 69 nucleotides EX31_RS07200: EX31_RS07200 - FNR family transcription factor, at 237,624 to 238,379 _RS07200 EX31_RS07205: EX31_RS07205 - universal stress protein UspE, at 238,515 to 239,474 _RS07205 EX31_RS07210: EX31_RS07210 - Re/Si-specific NAD(P)(+) transhydrogenase subunit beta, at 239,544 to 240,935 _RS07210 Position (kb) 238 239 240Strain fitness (log2 ratio) -2 -1 0 1 2at 237.546 kb on + strandat 237.547 kb on - strandat 237.554 kb on + strandat 237.554 kb on + strandat 237.554 kb on + strandat 237.554 kb on + strandat 237.554 kb on + strandat 237.555 kb on - strandat 237.555 kb on - strandat 237.555 kb on - strandat 237.555 kb on - strandat 237.555 kb on - strandat 237.556 kb on + strandat 237.556 kb on + strandat 237.557 kb on - strandat 237.557 kb on - strandat 237.557 kb on - strandat 237.560 kb on + strandat 237.560 kb on + strandat 237.561 kb on - strandat 237.561 kb on - strandat 237.565 kb on - strandat 237.623 kb on + strandat 237.623 kb on + strandat 237.653 kb on + strandat 237.692 kb on + strandat 237.692 kb on + strandat 237.692 kb on + strandat 237.710 kb on + strand, within EX31_RS07200at 237.748 kb on + strand, within EX31_RS07200at 237.800 kb on + strand, within EX31_RS07200at 237.826 kb on + strand, within EX31_RS07200at 237.826 kb on + strand, within EX31_RS07200at 237.826 kb on + strand, within EX31_RS07200at 237.826 kb on + strand, within EX31_RS07200at 237.826 kb on + strand, within EX31_RS07200at 237.826 kb on + strand, within EX31_RS07200at 237.826 kb on + strand, within EX31_RS07200at 237.828 kb on + strand, within EX31_RS07200at 237.828 kb on + strand, within EX31_RS07200at 237.943 kb on + strand, within EX31_RS07200at 237.943 kb on + strand, within EX31_RS07200at 237.943 kb on + strand, within EX31_RS07200at 237.980 kb on + strand, within EX31_RS07200at 237.980 kb on + strand, within EX31_RS07200at 237.980 kb on + strand, within EX31_RS07200at 238.075 kb on + strand, within EX31_RS07200at 238.075 kb on + strand, within EX31_RS07200at 238.075 kb on + strand, within EX31_RS07200at 238.075 kb on + strand, within EX31_RS07200at 238.091 kb on + strand, within EX31_RS07200at 238.091 kb on + strand, within EX31_RS07200at 238.146 kb on + strand, within EX31_RS07200at 238.146 kb on + strand, within EX31_RS07200at 238.226 kb on + strand, within EX31_RS07200at 238.226 kb on + strand, within EX31_RS07200at 238.230 kb on + strand, within EX31_RS07200at 238.230 kb on + strand, within EX31_RS07200at 238.264 kb on + strand, within EX31_RS07200at 238.300 kb on + strand, within EX31_RS07200at 238.300 kb on + strand, within EX31_RS07200at 238.300 kb on + strand, within EX31_RS07200at 238.311 kb on + strandat 238.311 kb on + strandat 238.311 kb on + strandat 238.311 kb on + strandat 238.311 kb on + strandat 238.311 kb on + strandat 238.311 kb on + strandat 238.312 kb on - strandat 238.471 kb on + strandat 238.472 kb on - strandat 238.474 kb on + strandat 238.474 kb on + strandat 238.474 kb on + strandat 238.494 kb on + strandat 238.525 kb on - strandat 238.545 kb on - strandat 238.546 kb on + strandat 238.604 kb on + strandat 238.651 kb on - strand, within EX31_RS07205at 238.749 kb on + strand, within EX31_RS07205at 238.915 kb on + strand, within EX31_RS07205at 238.915 kb on + strand, within EX31_RS07205at 238.948 kb on + strand, within EX31_RS07205at 239.161 kb on + strand, within EX31_RS07205at 239.161 kb on + strand, within EX31_RS07205at 239.161 kb on + strand, within EX31_RS07205at 239.161 kb on + strand, within EX31_RS07205at 239.161 kb on + strand, within EX31_RS07205at 239.161 kb on + strand, within EX31_RS07205at 239.162 kb on - strand, within EX31_RS07205at 239.163 kb on + strand, within EX31_RS07205at 239.163 kb on + strand, within EX31_RS07205at 239.164 kb on - strand, within EX31_RS07205at 239.165 kb on + strand, within EX31_RS07205at 239.165 kb on + strand, within EX31_RS07205at 239.166 kb on - strand, within EX31_RS07205at 239.166 kb on - strand, within EX31_RS07205at 239.166 kb on - strand, within EX31_RS07205at 239.241 kb on - strand, within EX31_RS07205at 239.241 kb on - strand, within EX31_RS07205at 239.580 kb on - strandat 239.664 kb on - strandat 240.152 kb on + strand, within EX31_RS07210at 240.153 kb on - strand, within EX31_RS07210at 240.153 kb on - strand, within EX31_RS07210at 240.161 kb on + strand, within EX31_RS07210at 240.161 kb on + strand, within EX31_RS07210at 240.162 kb on - strand, within EX31_RS07210at 240.164 kb on - strand, within EX31_RS07210at 240.164 kb on - strand, within EX31_RS07210

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N); ShewMM media; shaking
remove
237,546 + -0.3
237,547 - -0.0
237,554 + +0.7
237,554 + -0.6
237,554 + +2.5
237,554 + +0.2
237,554 + -0.2
237,555 - -0.3
237,555 - +0.2
237,555 - -1.0
237,555 - -0.8
237,555 - -0.0
237,556 + +0.7
237,556 + -0.1
237,557 - -0.8
237,557 - -1.0
237,557 - -0.0
237,560 + -1.1
237,560 + +1.5
237,561 - +0.7
237,561 - +0.5
237,565 - -0.2
237,623 + -0.3
237,623 + +0.7
237,653 + -0.4
237,692 + +0.2
237,692 + -1.7
237,692 + -0.4
237,710 + EX31_RS07200 0.11 +0.5
237,748 + EX31_RS07200 0.16 -0.8
237,800 + EX31_RS07200 0.23 -1.0
237,826 + EX31_RS07200 0.27 -0.8
237,826 + EX31_RS07200 0.27 -1.0
237,826 + EX31_RS07200 0.27 -1.0
237,826 + EX31_RS07200 0.27 -0.2
237,826 + EX31_RS07200 0.27 +0.5
237,826 + EX31_RS07200 0.27 +0.3
237,826 + EX31_RS07200 0.27 -1.6
237,828 + EX31_RS07200 0.27 -1.0
237,828 + EX31_RS07200 0.27 -0.2
237,943 + EX31_RS07200 0.42 +1.9
237,943 + EX31_RS07200 0.42 +2.2
237,943 + EX31_RS07200 0.42 -0.6
237,980 + EX31_RS07200 0.47 +1.4
237,980 + EX31_RS07200 0.47 -0.2
237,980 + EX31_RS07200 0.47 -0.6
238,075 + EX31_RS07200 0.60 +0.4
238,075 + EX31_RS07200 0.60 -2.3
238,075 + EX31_RS07200 0.60 -0.1
238,075 + EX31_RS07200 0.60 +0.2
238,091 + EX31_RS07200 0.62 +0.5
238,091 + EX31_RS07200 0.62 -1.1
238,146 + EX31_RS07200 0.69 -0.4
238,146 + EX31_RS07200 0.69 +0.3
238,226 + EX31_RS07200 0.80 -0.0
238,226 + EX31_RS07200 0.80 -0.2
238,230 + EX31_RS07200 0.80 +1.1
238,230 + EX31_RS07200 0.80 -0.5
238,264 + EX31_RS07200 0.85 +0.7
238,300 + EX31_RS07200 0.89 +0.9
238,300 + EX31_RS07200 0.89 -0.6
238,300 + EX31_RS07200 0.89 -0.2
238,311 + +0.1
238,311 + -1.7
238,311 + -0.2
238,311 + -0.9
238,311 + +0.2
238,311 + +0.7
238,311 + +0.2
238,312 - -2.2
238,471 + +0.3
238,472 - +1.5
238,474 + +0.3
238,474 + -0.5
238,474 + -1.6
238,494 + +0.5
238,525 - +0.3
238,545 - -1.5
238,546 + +0.0
238,604 + +0.8
238,651 - EX31_RS07205 0.14 -1.3
238,749 + EX31_RS07205 0.24 -0.6
238,915 + EX31_RS07205 0.42 +1.1
238,915 + EX31_RS07205 0.42 -1.9
238,948 + EX31_RS07205 0.45 -2.6
239,161 + EX31_RS07205 0.67 +1.4
239,161 + EX31_RS07205 0.67 -0.8
239,161 + EX31_RS07205 0.67 -0.9
239,161 + EX31_RS07205 0.67 -1.8
239,161 + EX31_RS07205 0.67 +0.5
239,161 + EX31_RS07205 0.67 +0.2
239,162 - EX31_RS07205 0.67 +0.2
239,163 + EX31_RS07205 0.68 +0.3
239,163 + EX31_RS07205 0.68 -2.0
239,164 - EX31_RS07205 0.68 +1.5
239,165 + EX31_RS07205 0.68 +1.1
239,165 + EX31_RS07205 0.68 -0.0
239,166 - EX31_RS07205 0.68 -0.8
239,166 - EX31_RS07205 0.68 -0.1
239,166 - EX31_RS07205 0.68 -1.3
239,241 - EX31_RS07205 0.76 -1.3
239,241 - EX31_RS07205 0.76 +1.3
239,580 - +1.1
239,664 - +1.0
240,152 + EX31_RS07210 0.44 +0.2
240,153 - EX31_RS07210 0.44 +0.3
240,153 - EX31_RS07210 0.44 -1.0
240,161 + EX31_RS07210 0.44 +1.0
240,161 + EX31_RS07210 0.44 -2.5
240,162 - EX31_RS07210 0.44 -1.2
240,164 - EX31_RS07210 0.45 +0.2
240,164 - EX31_RS07210 0.45 +0.8

Or see this region's nucleotide sequence