Experiment: L-Serine (N); ShewMM media; shaking
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS03870 and EX31_RS03875 are separated by 61 nucleotides EX31_RS03875 and EX31_RS03880 are separated by 439 nucleotides EX31_RS03880 and EX31_RS03885 are separated by 82 nucleotides
EX31_RS03870: EX31_RS03870 - isoleucine--tRNA ligase, at 286,109 to 288,925
_RS03870
EX31_RS03875: EX31_RS03875 - bifunctional riboflavin kinase/FAD synthetase, at 288,987 to 289,925
_RS03875
EX31_RS03880: EX31_RS03880 - 30S ribosomal protein S20, at 290,365 to 290,628
_RS03880
EX31_RS03885: EX31_RS03885 - transcriptional activator NhaR, at 290,711 to 291,598
_RS03885
Position (kb) 288
289
290 Strain fitness (log2 ratio) -2
-1
0
1
2 at 289.926 kb on - strand at 289.926 kb on - strand at 289.975 kb on - strand at 289.977 kb on - strand at 289.977 kb on - strand at 289.977 kb on - strand at 289.983 kb on + strand at 289.983 kb on + strand at 289.984 kb on - strand at 289.984 kb on - strand at 289.984 kb on - strand at 289.984 kb on - strand at 290.009 kb on + strand at 290.038 kb on - strand at 290.046 kb on + strand at 290.047 kb on - strand at 290.093 kb on - strand at 290.093 kb on - strand at 290.093 kb on - strand at 290.093 kb on - strand at 290.139 kb on - strand at 290.152 kb on + strand at 290.152 kb on + strand at 290.152 kb on + strand at 290.272 kb on - strand at 290.682 kb on + strand at 290.786 kb on + strand at 290.787 kb on - strand at 290.793 kb on + strand at 290.793 kb on + strand at 290.794 kb on - strand at 290.794 kb on - strand at 290.794 kb on - strand at 290.796 kb on + strand at 290.796 kb on + strand at 290.797 kb on - strand at 290.797 kb on - strand at 290.797 kb on - strand at 290.797 kb on - strand at 290.797 kb on - strand at 290.806 kb on + strand, within EX31_RS03885 at 290.806 kb on + strand, within EX31_RS03885 at 290.807 kb on - strand, within EX31_RS03885 at 290.866 kb on - strand, within EX31_RS03885
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N); ShewMM media; shaking remove 289,926 - -2.2 289,926 - -0.1 289,975 - +0.5 289,977 - +0.8 289,977 - +0.3 289,977 - +0.5 289,983 + +0.1 289,983 + +0.7 289,984 - -1.0 289,984 - +0.1 289,984 - +0.3 289,984 - +1.5 290,009 + +0.5 290,038 - +0.3 290,046 + -0.1 290,047 - +0.6 290,093 - -0.4 290,093 - -0.1 290,093 - +2.7 290,093 - +1.2 290,139 - +0.4 290,152 + -0.3 290,152 + -0.4 290,152 + -0.7 290,272 - -0.0 290,682 + +0.8 290,786 + +0.3 290,787 - -0.1 290,793 + +2.6 290,793 + +1.6 290,794 - +0.3 290,794 - -0.5 290,794 - -0.5 290,796 + +0.4 290,796 + +1.7 290,797 - +0.2 290,797 - +0.7 290,797 - -0.2 290,797 - -0.1 290,797 - -0.8 290,806 + EX31_RS03885 0.11 -0.3 290,806 + EX31_RS03885 0.11 -0.4 290,807 - EX31_RS03885 0.11 -0.6 290,866 - EX31_RS03885 0.17 +0.1
Or see this region's nucleotide sequence