Strain Fitness in Rahnella sp. WP5 around EX31_RS03695

Experiment: L-Serine (N); ShewMM media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS03690 and EX31_RS03695 are separated by 10 nucleotidesEX31_RS03695 and EX31_RS03700 are separated by 283 nucleotides EX31_RS03690: EX31_RS03690 - 3-isopropylmalate dehydratase large subunit, at 238,075 to 239,475 _RS03690 EX31_RS03695: EX31_RS03695 - 3-isopropylmalate dehydratase small subunit, at 239,486 to 240,088 _RS03695 EX31_RS03700: EX31_RS03700 - hypothetical protein, at 240,372 to 241,064 _RS03700 Position (kb) 239 240 241Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 238.563 kb on + strand, within EX31_RS03690at 238.620 kb on + strand, within EX31_RS03690at 238.620 kb on + strand, within EX31_RS03690at 238.620 kb on + strand, within EX31_RS03690at 238.620 kb on + strand, within EX31_RS03690at 238.621 kb on - strand, within EX31_RS03690at 238.722 kb on + strand, within EX31_RS03690at 238.722 kb on + strand, within EX31_RS03690at 238.722 kb on + strand, within EX31_RS03690at 238.723 kb on - strand, within EX31_RS03690at 238.723 kb on - strand, within EX31_RS03690at 238.789 kb on - strand, within EX31_RS03690at 238.789 kb on - strand, within EX31_RS03690at 238.906 kb on - strand, within EX31_RS03690at 238.906 kb on - strand, within EX31_RS03690at 238.947 kb on + strand, within EX31_RS03690at 238.948 kb on - strand, within EX31_RS03690at 239.047 kb on + strand, within EX31_RS03690at 239.047 kb on + strand, within EX31_RS03690at 239.047 kb on + strand, within EX31_RS03690at 239.047 kb on + strand, within EX31_RS03690at 239.047 kb on + strand, within EX31_RS03690at 239.047 kb on + strand, within EX31_RS03690at 239.047 kb on + strand, within EX31_RS03690at 239.048 kb on - strand, within EX31_RS03690at 239.048 kb on - strand, within EX31_RS03690at 239.048 kb on - strand, within EX31_RS03690at 239.048 kb on - strand, within EX31_RS03690at 239.048 kb on - strand, within EX31_RS03690at 239.048 kb on - strand, within EX31_RS03690at 239.048 kb on - strand, within EX31_RS03690at 239.048 kb on - strand, within EX31_RS03690at 239.048 kb on - strand, within EX31_RS03690at 239.048 kb on - strand, within EX31_RS03690at 239.070 kb on + strand, within EX31_RS03690at 239.094 kb on + strand, within EX31_RS03690at 239.095 kb on - strand, within EX31_RS03690at 239.186 kb on + strand, within EX31_RS03690at 239.187 kb on - strand, within EX31_RS03690at 239.187 kb on - strand, within EX31_RS03690at 239.250 kb on + strand, within EX31_RS03690at 239.298 kb on + strand, within EX31_RS03690at 239.298 kb on + strand, within EX31_RS03690at 239.298 kb on + strand, within EX31_RS03690at 239.298 kb on + strand, within EX31_RS03690at 239.298 kb on + strand, within EX31_RS03690at 239.298 kb on + strand, within EX31_RS03690at 239.298 kb on + strand, within EX31_RS03690at 239.298 kb on + strand, within EX31_RS03690at 239.298 kb on + strand, within EX31_RS03690at 239.298 kb on + strand, within EX31_RS03690at 239.298 kb on + strand, within EX31_RS03690at 239.298 kb on + strand, within EX31_RS03690at 239.299 kb on - strand, within EX31_RS03690at 239.299 kb on - strand, within EX31_RS03690at 239.299 kb on - strand, within EX31_RS03690at 239.299 kb on - strand, within EX31_RS03690at 239.299 kb on - strand, within EX31_RS03690at 239.299 kb on - strand, within EX31_RS03690at 239.299 kb on - strand, within EX31_RS03690at 239.299 kb on - strand, within EX31_RS03690at 239.299 kb on - strand, within EX31_RS03690at 239.352 kb on + strandat 239.353 kb on - strandat 239.353 kb on - strandat 239.364 kb on + strandat 239.365 kb on - strandat 239.365 kb on - strandat 239.492 kb on - strandat 239.536 kb on + strandat 239.536 kb on + strandat 239.536 kb on + strandat 239.536 kb on + strandat 239.537 kb on - strandat 239.563 kb on + strand, within EX31_RS03695at 239.575 kb on - strand, within EX31_RS03695at 239.684 kb on + strand, within EX31_RS03695at 239.685 kb on - strand, within EX31_RS03695at 239.769 kb on - strand, within EX31_RS03695at 239.814 kb on - strand, within EX31_RS03695at 239.897 kb on - strand, within EX31_RS03695at 239.961 kb on - strand, within EX31_RS03695at 240.046 kb on + strandat 240.047 kb on - strandat 240.090 kb on + strandat 240.090 kb on + strandat 240.090 kb on + strandat 240.090 kb on + strandat 240.091 kb on - strandat 240.091 kb on - strandat 240.091 kb on - strandat 240.091 kb on - strandat 240.093 kb on + strandat 240.093 kb on + strandat 240.093 kb on + strandat 240.175 kb on - strandat 240.184 kb on + strandat 240.184 kb on + strandat 240.185 kb on - strandat 240.185 kb on - strandat 240.185 kb on - strandat 240.185 kb on - strandat 240.218 kb on - strandat 240.218 kb on - strandat 240.218 kb on - strandat 240.227 kb on - strandat 240.227 kb on - strandat 240.307 kb on - strandat 240.325 kb on - strandat 240.437 kb on - strandat 240.446 kb on + strand, within EX31_RS03700at 240.456 kb on - strand, within EX31_RS03700at 240.456 kb on - strand, within EX31_RS03700at 240.456 kb on - strand, within EX31_RS03700at 240.524 kb on - strand, within EX31_RS03700at 240.635 kb on + strand, within EX31_RS03700at 240.639 kb on + strand, within EX31_RS03700at 240.639 kb on + strand, within EX31_RS03700at 240.639 kb on + strand, within EX31_RS03700at 240.640 kb on - strand, within EX31_RS03700at 240.640 kb on - strand, within EX31_RS03700at 240.654 kb on - strand, within EX31_RS03700at 240.654 kb on - strand, within EX31_RS03700at 240.654 kb on - strand, within EX31_RS03700at 240.675 kb on + strand, within EX31_RS03700at 240.728 kb on - strand, within EX31_RS03700at 240.799 kb on + strand, within EX31_RS03700at 240.799 kb on + strand, within EX31_RS03700at 240.800 kb on - strand, within EX31_RS03700at 240.800 kb on - strand, within EX31_RS03700at 240.800 kb on - strand, within EX31_RS03700at 240.865 kb on - strand, within EX31_RS03700at 240.943 kb on - strand, within EX31_RS03700at 240.961 kb on - strand, within EX31_RS03700at 240.961 kb on - strand, within EX31_RS03700at 240.961 kb on - strand, within EX31_RS03700at 240.963 kb on - strand, within EX31_RS03700at 241.031 kb on + strandat 241.032 kb on - strandat 241.046 kb on + strandat 241.050 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N); ShewMM media; shaking
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238,563 + EX31_RS03690 0.35 -3.1
238,620 + EX31_RS03690 0.39 -2.4
238,620 + EX31_RS03690 0.39 -3.4
238,620 + EX31_RS03690 0.39 -0.5
238,620 + EX31_RS03690 0.39 -2.3
238,621 - EX31_RS03690 0.39 -1.6
238,722 + EX31_RS03690 0.46 -0.9
238,722 + EX31_RS03690 0.46 -2.3
238,722 + EX31_RS03690 0.46 -1.6
238,723 - EX31_RS03690 0.46 -2.2
238,723 - EX31_RS03690 0.46 -0.9
238,789 - EX31_RS03690 0.51 -2.1
238,789 - EX31_RS03690 0.51 -0.3
238,906 - EX31_RS03690 0.59 -1.6
238,906 - EX31_RS03690 0.59 -2.2
238,947 + EX31_RS03690 0.62 -3.0
238,948 - EX31_RS03690 0.62 -2.2
239,047 + EX31_RS03690 0.69 -2.8
239,047 + EX31_RS03690 0.69 -2.3
239,047 + EX31_RS03690 0.69 -4.9
239,047 + EX31_RS03690 0.69 -1.7
239,047 + EX31_RS03690 0.69 -1.0
239,047 + EX31_RS03690 0.69 -2.2
239,047 + EX31_RS03690 0.69 -1.1
239,048 - EX31_RS03690 0.69 -1.5
239,048 - EX31_RS03690 0.69 -2.2
239,048 - EX31_RS03690 0.69 -2.2
239,048 - EX31_RS03690 0.69 -1.8
239,048 - EX31_RS03690 0.69 -2.2
239,048 - EX31_RS03690 0.69 -3.7
239,048 - EX31_RS03690 0.69 -2.0
239,048 - EX31_RS03690 0.69 -0.2
239,048 - EX31_RS03690 0.69 -3.0
239,048 - EX31_RS03690 0.69 -2.2
239,070 + EX31_RS03690 0.71 -0.9
239,094 + EX31_RS03690 0.73 -1.9
239,095 - EX31_RS03690 0.73 -1.3
239,186 + EX31_RS03690 0.79 -2.3
239,187 - EX31_RS03690 0.79 -3.4
239,187 - EX31_RS03690 0.79 -2.8
239,250 + EX31_RS03690 0.84 -3.5
239,298 + EX31_RS03690 0.87 -1.4
239,298 + EX31_RS03690 0.87 -3.7
239,298 + EX31_RS03690 0.87 -2.4
239,298 + EX31_RS03690 0.87 -2.1
239,298 + EX31_RS03690 0.87 -0.9
239,298 + EX31_RS03690 0.87 -1.0
239,298 + EX31_RS03690 0.87 -2.7
239,298 + EX31_RS03690 0.87 -2.8
239,298 + EX31_RS03690 0.87 -1.3
239,298 + EX31_RS03690 0.87 -2.8
239,298 + EX31_RS03690 0.87 -2.7
239,298 + EX31_RS03690 0.87 -0.3
239,299 - EX31_RS03690 0.87 -2.9
239,299 - EX31_RS03690 0.87 -0.0
239,299 - EX31_RS03690 0.87 -1.3
239,299 - EX31_RS03690 0.87 -0.8
239,299 - EX31_RS03690 0.87 -1.9
239,299 - EX31_RS03690 0.87 -2.4
239,299 - EX31_RS03690 0.87 -3.3
239,299 - EX31_RS03690 0.87 -1.5
239,299 - EX31_RS03690 0.87 -3.1
239,352 + -3.0
239,353 - -1.3
239,353 - -0.0
239,364 + -3.6
239,365 - -1.6
239,365 - -2.4
239,492 - -2.6
239,536 + -1.7
239,536 + -2.5
239,536 + -1.7
239,536 + -1.0
239,537 - -2.0
239,563 + EX31_RS03695 0.13 -3.8
239,575 - EX31_RS03695 0.15 -3.9
239,684 + EX31_RS03695 0.33 -2.8
239,685 - EX31_RS03695 0.33 -1.8
239,769 - EX31_RS03695 0.47 -3.5
239,814 - EX31_RS03695 0.54 -2.8
239,897 - EX31_RS03695 0.68 -3.3
239,961 - EX31_RS03695 0.79 -1.1
240,046 + -2.4
240,047 - -2.1
240,090 + +0.5
240,090 + -0.7
240,090 + +0.3
240,090 + -0.3
240,091 - +1.4
240,091 - -0.7
240,091 - +0.5
240,091 - +0.5
240,093 + -0.5
240,093 + +0.6
240,093 + +0.1
240,175 - +1.3
240,184 + -0.2
240,184 + -0.5
240,185 - -0.3
240,185 - +0.1
240,185 - +0.2
240,185 - -0.9
240,218 - +1.0
240,218 - +1.0
240,218 - -0.3
240,227 - +0.2
240,227 - +1.3
240,307 - +0.5
240,325 - -0.2
240,437 - +0.3
240,446 + EX31_RS03700 0.11 -0.2
240,456 - EX31_RS03700 0.12 -0.2
240,456 - EX31_RS03700 0.12 -1.2
240,456 - EX31_RS03700 0.12 -0.2
240,524 - EX31_RS03700 0.22 +1.0
240,635 + EX31_RS03700 0.38 -1.3
240,639 + EX31_RS03700 0.39 +0.1
240,639 + EX31_RS03700 0.39 +0.8
240,639 + EX31_RS03700 0.39 -0.2
240,640 - EX31_RS03700 0.39 -0.7
240,640 - EX31_RS03700 0.39 +0.5
240,654 - EX31_RS03700 0.41 -0.2
240,654 - EX31_RS03700 0.41 -0.5
240,654 - EX31_RS03700 0.41 +0.6
240,675 + EX31_RS03700 0.44 -1.0
240,728 - EX31_RS03700 0.51 +0.1
240,799 + EX31_RS03700 0.62 +0.7
240,799 + EX31_RS03700 0.62 +0.7
240,800 - EX31_RS03700 0.62 +0.5
240,800 - EX31_RS03700 0.62 +1.6
240,800 - EX31_RS03700 0.62 +0.1
240,865 - EX31_RS03700 0.71 +0.2
240,943 - EX31_RS03700 0.82 -0.0
240,961 - EX31_RS03700 0.85 +0.3
240,961 - EX31_RS03700 0.85 -0.2
240,961 - EX31_RS03700 0.85 +0.0
240,963 - EX31_RS03700 0.85 +0.9
241,031 + -0.1
241,032 - -0.1
241,046 + +0.5
241,050 + +0.8

Or see this region's nucleotide sequence