Experiment: L-Serine (N); ShewMM media; shaking
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS01935 and EX31_RS01940 overlap by 1 nucleotides EX31_RS01940 and EX31_RS01945 are separated by 22 nucleotides
EX31_RS01935: EX31_RS01935 - type VI secretion protein VasK, at 420,369 to 423,776
_RS01935
EX31_RS01940: EX31_RS01940 - type VI secretion system protein TssA, at 423,776 to 425,380
_RS01940
EX31_RS01945: EX31_RS01945 - type VI secretion system tip protein VgrG, at 425,403 to 427,910
_RS01945
Position (kb) 423
424
425
426 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 422.892 kb on + strand, within EX31_RS01935 at 423.178 kb on + strand, within EX31_RS01935 at 423.178 kb on + strand, within EX31_RS01935 at 423.178 kb on + strand, within EX31_RS01935 at 423.178 kb on + strand, within EX31_RS01935 at 423.179 kb on - strand, within EX31_RS01935 at 423.179 kb on - strand, within EX31_RS01935 at 423.185 kb on + strand, within EX31_RS01935 at 423.185 kb on + strand, within EX31_RS01935 at 423.185 kb on + strand, within EX31_RS01935 at 423.186 kb on - strand, within EX31_RS01935 at 423.215 kb on + strand, within EX31_RS01935 at 423.215 kb on + strand, within EX31_RS01935 at 423.215 kb on + strand, within EX31_RS01935 at 423.215 kb on + strand, within EX31_RS01935 at 423.216 kb on - strand, within EX31_RS01935 at 423.219 kb on - strand, within EX31_RS01935 at 423.219 kb on - strand, within EX31_RS01935 at 423.276 kb on + strand, within EX31_RS01935 at 423.277 kb on - strand, within EX31_RS01935 at 423.393 kb on + strand, within EX31_RS01935 at 423.396 kb on + strand, within EX31_RS01935 at 423.396 kb on + strand, within EX31_RS01935 at 423.397 kb on - strand, within EX31_RS01935 at 423.397 kb on - strand, within EX31_RS01935 at 423.488 kb on + strand at 423.542 kb on + strand at 423.584 kb on + strand at 423.584 kb on + strand at 423.584 kb on + strand at 423.587 kb on + strand at 423.625 kb on - strand at 424.043 kb on + strand, within EX31_RS01940 at 424.043 kb on + strand, within EX31_RS01940 at 424.044 kb on - strand, within EX31_RS01940 at 424.046 kb on + strand, within EX31_RS01940 at 424.046 kb on + strand, within EX31_RS01940 at 424.046 kb on + strand, within EX31_RS01940 at 424.047 kb on - strand, within EX31_RS01940 at 424.047 kb on - strand, within EX31_RS01940 at 424.120 kb on + strand, within EX31_RS01940 at 424.121 kb on - strand, within EX31_RS01940 at 424.121 kb on - strand, within EX31_RS01940 at 424.287 kb on + strand, within EX31_RS01940 at 424.451 kb on - strand, within EX31_RS01940 at 424.506 kb on - strand, within EX31_RS01940 at 424.571 kb on - strand, within EX31_RS01940 at 424.609 kb on + strand, within EX31_RS01940 at 424.751 kb on + strand, within EX31_RS01940 at 424.751 kb on + strand, within EX31_RS01940 at 424.751 kb on + strand, within EX31_RS01940 at 424.751 kb on + strand, within EX31_RS01940 at 424.751 kb on + strand, within EX31_RS01940 at 424.752 kb on - strand, within EX31_RS01940 at 424.752 kb on - strand, within EX31_RS01940 at 424.752 kb on - strand, within EX31_RS01940 at 424.752 kb on - strand, within EX31_RS01940 at 424.752 kb on - strand, within EX31_RS01940 at 424.752 kb on - strand, within EX31_RS01940 at 424.752 kb on - strand, within EX31_RS01940 at 424.752 kb on - strand, within EX31_RS01940 at 424.811 kb on - strand, within EX31_RS01940 at 424.811 kb on - strand, within EX31_RS01940 at 424.811 kb on - strand, within EX31_RS01940 at 424.958 kb on + strand, within EX31_RS01940 at 425.097 kb on + strand, within EX31_RS01940 at 425.098 kb on - strand, within EX31_RS01940 at 425.106 kb on + strand, within EX31_RS01940 at 425.106 kb on + strand, within EX31_RS01940 at 425.116 kb on - strand, within EX31_RS01940 at 425.139 kb on - strand, within EX31_RS01940 at 425.321 kb on + strand at 425.386 kb on + strand at 425.386 kb on + strand at 425.396 kb on + strand at 425.411 kb on + strand at 426.147 kb on - strand, within EX31_RS01945 at 426.147 kb on - strand, within EX31_RS01945 at 426.173 kb on - strand, within EX31_RS01945 at 426.223 kb on - strand, within EX31_RS01945 at 426.235 kb on - strand, within EX31_RS01945 at 426.235 kb on - strand, within EX31_RS01945 at 426.235 kb on - strand, within EX31_RS01945 at 426.235 kb on - strand, within EX31_RS01945 at 426.235 kb on - strand, within EX31_RS01945 at 426.240 kb on + strand, within EX31_RS01945 at 426.243 kb on - strand, within EX31_RS01945
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N); ShewMM media; shaking remove 422,892 + EX31_RS01935 0.74 -0.5 423,178 + EX31_RS01935 0.82 +0.3 423,178 + EX31_RS01935 0.82 +0.6 423,178 + EX31_RS01935 0.82 -0.2 423,178 + EX31_RS01935 0.82 +1.0 423,179 - EX31_RS01935 0.82 +0.2 423,179 - EX31_RS01935 0.82 -0.7 423,185 + EX31_RS01935 0.83 +0.3 423,185 + EX31_RS01935 0.83 -0.5 423,185 + EX31_RS01935 0.83 +0.3 423,186 - EX31_RS01935 0.83 -0.7 423,215 + EX31_RS01935 0.84 +1.7 423,215 + EX31_RS01935 0.84 -0.9 423,215 + EX31_RS01935 0.84 +0.1 423,215 + EX31_RS01935 0.84 +0.3 423,216 - EX31_RS01935 0.84 -0.1 423,219 - EX31_RS01935 0.84 +0.3 423,219 - EX31_RS01935 0.84 +1.3 423,276 + EX31_RS01935 0.85 +0.3 423,277 - EX31_RS01935 0.85 +1.2 423,393 + EX31_RS01935 0.89 +0.3 423,396 + EX31_RS01935 0.89 +1.9 423,396 + EX31_RS01935 0.89 -0.2 423,397 - EX31_RS01935 0.89 +0.4 423,397 - EX31_RS01935 0.89 -0.4 423,488 + +0.5 423,542 + -0.1 423,584 + -0.7 423,584 + +0.1 423,584 + +0.5 423,587 + +1.3 423,625 - +1.5 424,043 + EX31_RS01940 0.17 -2.0 424,043 + EX31_RS01940 0.17 -1.3 424,044 - EX31_RS01940 0.17 +0.2 424,046 + EX31_RS01940 0.17 -0.7 424,046 + EX31_RS01940 0.17 +0.7 424,046 + EX31_RS01940 0.17 -0.0 424,047 - EX31_RS01940 0.17 +0.3 424,047 - EX31_RS01940 0.17 -0.5 424,120 + EX31_RS01940 0.21 -0.4 424,121 - EX31_RS01940 0.21 -0.2 424,121 - EX31_RS01940 0.21 -0.9 424,287 + EX31_RS01940 0.32 -0.4 424,451 - EX31_RS01940 0.42 +0.3 424,506 - EX31_RS01940 0.45 -0.2 424,571 - EX31_RS01940 0.50 +1.9 424,609 + EX31_RS01940 0.52 +0.7 424,751 + EX31_RS01940 0.61 +0.2 424,751 + EX31_RS01940 0.61 +0.9 424,751 + EX31_RS01940 0.61 -1.5 424,751 + EX31_RS01940 0.61 -0.1 424,751 + EX31_RS01940 0.61 -1.7 424,752 - EX31_RS01940 0.61 -1.3 424,752 - EX31_RS01940 0.61 +0.8 424,752 - EX31_RS01940 0.61 +0.6 424,752 - EX31_RS01940 0.61 -1.5 424,752 - EX31_RS01940 0.61 +0.9 424,752 - EX31_RS01940 0.61 -0.1 424,752 - EX31_RS01940 0.61 -0.5 424,752 - EX31_RS01940 0.61 +1.5 424,811 - EX31_RS01940 0.64 +0.3 424,811 - EX31_RS01940 0.64 -0.7 424,811 - EX31_RS01940 0.64 -0.9 424,958 + EX31_RS01940 0.74 +0.8 425,097 + EX31_RS01940 0.82 -2.8 425,098 - EX31_RS01940 0.82 -1.1 425,106 + EX31_RS01940 0.83 +0.9 425,106 + EX31_RS01940 0.83 +0.2 425,116 - EX31_RS01940 0.83 -0.6 425,139 - EX31_RS01940 0.85 +1.1 425,321 + +0.3 425,386 + +0.2 425,386 + -0.3 425,396 + +0.6 425,411 + +0.3 426,147 - EX31_RS01945 0.30 +0.3 426,147 - EX31_RS01945 0.30 +0.7 426,173 - EX31_RS01945 0.31 +1.6 426,223 - EX31_RS01945 0.33 +0.4 426,235 - EX31_RS01945 0.33 +0.2 426,235 - EX31_RS01945 0.33 +0.7 426,235 - EX31_RS01945 0.33 -2.1 426,235 - EX31_RS01945 0.33 +0.9 426,235 - EX31_RS01945 0.33 +0.6 426,240 + EX31_RS01945 0.33 +0.9 426,243 - EX31_RS01945 0.33 +0.2
Or see this region's nucleotide sequence