Strain Fitness in Rahnella sp. WP5 around EX31_RS00520

Experiment: L-Serine (N); ShewMM media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS00510 and EX31_RS00515 are separated by 138 nucleotidesEX31_RS00515 and EX31_RS00520 are separated by 5 nucleotidesEX31_RS00520 and EX31_RS00525 are separated by 55 nucleotidesEX31_RS00525 and EX31_RS00530 overlap by 8 nucleotides EX31_RS00510: EX31_RS00510 - TetR/AcrR family transcriptional regulator, at 112,418 to 113,029 _RS00510 EX31_RS00515: EX31_RS00515 - siderophore-interacting protein, at 113,168 to 113,980 _RS00515 EX31_RS00520: EX31_RS00520 - PadR family transcriptional regulator, at 113,986 to 114,465 _RS00520 EX31_RS00525: EX31_RS00525 - type I methionyl aminopeptidase, at 114,521 to 115,321 _RS00525 EX31_RS00530: EX31_RS00530 - ParD-like family protein, at 115,314 to 115,568 _RS00530 Position (kb) 113 114 115Strain fitness (log2 ratio) -2 -1 0 1 2 3at 113.242 kb on + strandat 113.282 kb on - strand, within EX31_RS00515at 113.292 kb on + strand, within EX31_RS00515at 113.293 kb on - strand, within EX31_RS00515at 113.296 kb on - strand, within EX31_RS00515at 113.320 kb on + strand, within EX31_RS00515at 113.320 kb on + strand, within EX31_RS00515at 113.383 kb on + strand, within EX31_RS00515at 113.383 kb on + strand, within EX31_RS00515at 113.383 kb on + strand, within EX31_RS00515at 113.383 kb on + strand, within EX31_RS00515at 113.383 kb on + strand, within EX31_RS00515at 113.465 kb on + strand, within EX31_RS00515at 113.465 kb on + strand, within EX31_RS00515at 113.501 kb on + strand, within EX31_RS00515at 113.501 kb on + strand, within EX31_RS00515at 113.501 kb on + strand, within EX31_RS00515at 113.602 kb on + strand, within EX31_RS00515at 113.603 kb on - strand, within EX31_RS00515at 113.606 kb on + strand, within EX31_RS00515at 113.606 kb on + strand, within EX31_RS00515at 113.606 kb on + strand, within EX31_RS00515at 113.608 kb on + strand, within EX31_RS00515at 113.608 kb on + strand, within EX31_RS00515at 113.608 kb on + strand, within EX31_RS00515at 113.608 kb on + strand, within EX31_RS00515at 113.608 kb on + strand, within EX31_RS00515at 113.608 kb on + strand, within EX31_RS00515at 113.621 kb on + strand, within EX31_RS00515at 113.621 kb on + strand, within EX31_RS00515at 113.621 kb on + strand, within EX31_RS00515at 113.621 kb on + strand, within EX31_RS00515at 113.621 kb on + strand, within EX31_RS00515at 113.621 kb on + strand, within EX31_RS00515at 113.621 kb on + strand, within EX31_RS00515at 113.621 kb on + strand, within EX31_RS00515at 113.621 kb on + strand, within EX31_RS00515at 113.621 kb on + strand, within EX31_RS00515at 113.621 kb on + strand, within EX31_RS00515at 113.621 kb on + strand, within EX31_RS00515at 113.621 kb on + strand, within EX31_RS00515at 113.621 kb on + strand, within EX31_RS00515at 113.621 kb on + strand, within EX31_RS00515at 113.622 kb on - strand, within EX31_RS00515at 113.622 kb on - strand, within EX31_RS00515at 113.622 kb on - strand, within EX31_RS00515at 113.622 kb on - strand, within EX31_RS00515at 113.741 kb on + strand, within EX31_RS00515at 113.741 kb on + strand, within EX31_RS00515at 113.741 kb on + strand, within EX31_RS00515at 113.745 kb on + strand, within EX31_RS00515at 113.745 kb on + strand, within EX31_RS00515at 113.745 kb on + strand, within EX31_RS00515at 113.745 kb on + strand, within EX31_RS00515at 113.769 kb on + strand, within EX31_RS00515at 113.770 kb on - strand, within EX31_RS00515at 113.864 kb on + strand, within EX31_RS00515at 113.864 kb on + strand, within EX31_RS00515at 113.864 kb on + strand, within EX31_RS00515at 113.865 kb on - strand, within EX31_RS00515at 113.934 kb on + strandat 113.934 kb on + strandat 113.934 kb on + strandat 113.934 kb on + strandat 113.935 kb on - strandat 113.971 kb on + strandat 113.974 kb on + strandat 113.974 kb on + strandat 113.974 kb on + strandat 113.974 kb on + strandat 113.974 kb on + strandat 113.975 kb on - strandat 113.975 kb on - strandat 113.994 kb on + strandat 114.080 kb on - strand, within EX31_RS00520at 114.121 kb on + strand, within EX31_RS00520at 114.121 kb on + strand, within EX31_RS00520at 114.121 kb on + strand, within EX31_RS00520at 114.121 kb on + strand, within EX31_RS00520at 114.122 kb on - strand, within EX31_RS00520at 114.139 kb on - strand, within EX31_RS00520at 114.207 kb on + strand, within EX31_RS00520at 114.217 kb on + strand, within EX31_RS00520at 114.217 kb on + strand, within EX31_RS00520at 114.225 kb on + strand, within EX31_RS00520at 114.308 kb on + strand, within EX31_RS00520at 114.412 kb on + strand, within EX31_RS00520at 114.412 kb on + strand, within EX31_RS00520at 114.412 kb on + strand, within EX31_RS00520at 114.412 kb on + strand, within EX31_RS00520at 114.414 kb on + strand, within EX31_RS00520at 114.414 kb on + strand, within EX31_RS00520at 114.463 kb on + strandat 114.517 kb on - strandat 114.526 kb on + strandat 114.527 kb on - strandat 114.548 kb on + strandat 114.580 kb on + strandat 114.580 kb on + strandat 114.580 kb on + strandat 114.581 kb on - strandat 114.581 kb on - strandat 114.581 kb on - strandat 114.581 kb on - strandat 114.581 kb on - strandat 114.581 kb on - strandat 114.581 kb on - strandat 114.581 kb on - strandat 114.581 kb on - strandat 114.581 kb on - strandat 114.614 kb on - strand, within EX31_RS00525at 114.614 kb on - strand, within EX31_RS00525at 114.689 kb on + strand, within EX31_RS00525at 114.689 kb on + strand, within EX31_RS00525at 114.690 kb on - strand, within EX31_RS00525at 114.690 kb on - strand, within EX31_RS00525at 114.690 kb on - strand, within EX31_RS00525at 114.690 kb on - strand, within EX31_RS00525at 114.690 kb on - strand, within EX31_RS00525at 114.733 kb on - strand, within EX31_RS00525at 114.759 kb on + strand, within EX31_RS00525at 114.786 kb on + strand, within EX31_RS00525at 114.787 kb on - strand, within EX31_RS00525at 114.870 kb on - strand, within EX31_RS00525at 114.870 kb on - strand, within EX31_RS00525at 114.900 kb on + strand, within EX31_RS00525at 114.900 kb on + strand, within EX31_RS00525at 114.901 kb on - strand, within EX31_RS00525at 114.901 kb on - strand, within EX31_RS00525at 114.901 kb on - strand, within EX31_RS00525at 114.948 kb on + strand, within EX31_RS00525at 114.951 kb on + strand, within EX31_RS00525at 114.951 kb on + strand, within EX31_RS00525at 114.952 kb on - strand, within EX31_RS00525at 114.952 kb on - strand, within EX31_RS00525at 114.952 kb on - strand, within EX31_RS00525at 114.952 kb on - strand, within EX31_RS00525at 114.955 kb on + strand, within EX31_RS00525at 114.956 kb on - strand, within EX31_RS00525at 114.956 kb on - strand, within EX31_RS00525at 114.956 kb on - strand, within EX31_RS00525at 114.956 kb on - strand, within EX31_RS00525at 114.956 kb on - strand, within EX31_RS00525at 115.195 kb on - strand, within EX31_RS00525at 115.195 kb on - strand, within EX31_RS00525at 115.250 kb on - strandat 115.283 kb on - strandat 115.297 kb on - strandat 115.297 kb on - strandat 115.368 kb on - strand, within EX31_RS00530at 115.368 kb on - strand, within EX31_RS00530at 115.437 kb on - strand, within EX31_RS00530

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N); ShewMM media; shaking
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113,242 + +0.8
113,282 - EX31_RS00515 0.14 -1.1
113,292 + EX31_RS00515 0.15 +0.5
113,293 - EX31_RS00515 0.15 +1.2
113,296 - EX31_RS00515 0.16 +0.4
113,320 + EX31_RS00515 0.19 +1.1
113,320 + EX31_RS00515 0.19 -0.5
113,383 + EX31_RS00515 0.26 +0.4
113,383 + EX31_RS00515 0.26 -0.4
113,383 + EX31_RS00515 0.26 +1.3
113,383 + EX31_RS00515 0.26 +1.2
113,383 + EX31_RS00515 0.26 -0.4
113,465 + EX31_RS00515 0.37 +0.4
113,465 + EX31_RS00515 0.37 +0.4
113,501 + EX31_RS00515 0.41 +0.9
113,501 + EX31_RS00515 0.41 +0.6
113,501 + EX31_RS00515 0.41 +0.2
113,602 + EX31_RS00515 0.53 +0.9
113,603 - EX31_RS00515 0.54 +0.6
113,606 + EX31_RS00515 0.54 -0.3
113,606 + EX31_RS00515 0.54 +0.7
113,606 + EX31_RS00515 0.54 +1.0
113,608 + EX31_RS00515 0.54 +0.8
113,608 + EX31_RS00515 0.54 -1.0
113,608 + EX31_RS00515 0.54 +1.2
113,608 + EX31_RS00515 0.54 +0.2
113,608 + EX31_RS00515 0.54 -1.0
113,608 + EX31_RS00515 0.54 -0.5
113,621 + EX31_RS00515 0.56 -0.2
113,621 + EX31_RS00515 0.56 -1.5
113,621 + EX31_RS00515 0.56 +0.1
113,621 + EX31_RS00515 0.56 -1.3
113,621 + EX31_RS00515 0.56 +0.4
113,621 + EX31_RS00515 0.56 -0.6
113,621 + EX31_RS00515 0.56 +1.1
113,621 + EX31_RS00515 0.56 -0.3
113,621 + EX31_RS00515 0.56 +0.1
113,621 + EX31_RS00515 0.56 -1.3
113,621 + EX31_RS00515 0.56 +0.3
113,621 + EX31_RS00515 0.56 +0.8
113,621 + EX31_RS00515 0.56 -0.3
113,621 + EX31_RS00515 0.56 -2.6
113,621 + EX31_RS00515 0.56 +3.0
113,622 - EX31_RS00515 0.56 -0.3
113,622 - EX31_RS00515 0.56 +0.7
113,622 - EX31_RS00515 0.56 -0.2
113,622 - EX31_RS00515 0.56 -0.5
113,741 + EX31_RS00515 0.70 +1.0
113,741 + EX31_RS00515 0.70 -0.1
113,741 + EX31_RS00515 0.70 +0.4
113,745 + EX31_RS00515 0.71 -0.1
113,745 + EX31_RS00515 0.71 +0.7
113,745 + EX31_RS00515 0.71 +0.6
113,745 + EX31_RS00515 0.71 +1.4
113,769 + EX31_RS00515 0.74 +0.3
113,770 - EX31_RS00515 0.74 -1.9
113,864 + EX31_RS00515 0.86 +0.9
113,864 + EX31_RS00515 0.86 +0.2
113,864 + EX31_RS00515 0.86 -0.3
113,865 - EX31_RS00515 0.86 +2.0
113,934 + +0.1
113,934 + +0.8
113,934 + +1.0
113,934 + -0.1
113,935 - -1.2
113,971 + +0.0
113,974 + +1.5
113,974 + -0.3
113,974 + +0.8
113,974 + +0.3
113,974 + -1.2
113,975 - +1.0
113,975 - +0.3
113,994 + +0.8
114,080 - EX31_RS00520 0.20 -0.5
114,121 + EX31_RS00520 0.28 +0.2
114,121 + EX31_RS00520 0.28 +0.0
114,121 + EX31_RS00520 0.28 +0.6
114,121 + EX31_RS00520 0.28 +0.5
114,122 - EX31_RS00520 0.28 +0.4
114,139 - EX31_RS00520 0.32 +0.2
114,207 + EX31_RS00520 0.46 -0.7
114,217 + EX31_RS00520 0.48 +2.0
114,217 + EX31_RS00520 0.48 -1.3
114,225 + EX31_RS00520 0.50 +0.3
114,308 + EX31_RS00520 0.67 +0.3
114,412 + EX31_RS00520 0.89 -0.2
114,412 + EX31_RS00520 0.89 -0.4
114,412 + EX31_RS00520 0.89 +0.1
114,412 + EX31_RS00520 0.89 -0.7
114,414 + EX31_RS00520 0.89 -0.3
114,414 + EX31_RS00520 0.89 -0.5
114,463 + -0.3
114,517 - -1.9
114,526 + -0.2
114,527 - -1.6
114,548 + -1.0
114,580 + -0.9
114,580 + +0.3
114,580 + +0.7
114,581 - +0.1
114,581 - +0.2
114,581 - -1.5
114,581 - +0.2
114,581 - -0.8
114,581 - +0.1
114,581 - -0.1
114,581 - +1.3
114,581 - +1.2
114,581 - +1.4
114,614 - EX31_RS00525 0.12 +0.7
114,614 - EX31_RS00525 0.12 +0.7
114,689 + EX31_RS00525 0.21 +0.1
114,689 + EX31_RS00525 0.21 -0.1
114,690 - EX31_RS00525 0.21 +1.3
114,690 - EX31_RS00525 0.21 -1.2
114,690 - EX31_RS00525 0.21 +0.7
114,690 - EX31_RS00525 0.21 +0.1
114,690 - EX31_RS00525 0.21 -0.2
114,733 - EX31_RS00525 0.26 -0.6
114,759 + EX31_RS00525 0.30 +0.0
114,786 + EX31_RS00525 0.33 -1.0
114,787 - EX31_RS00525 0.33 +0.6
114,870 - EX31_RS00525 0.44 +0.5
114,870 - EX31_RS00525 0.44 +0.8
114,900 + EX31_RS00525 0.47 -0.6
114,900 + EX31_RS00525 0.47 -1.2
114,901 - EX31_RS00525 0.47 +0.3
114,901 - EX31_RS00525 0.47 -0.6
114,901 - EX31_RS00525 0.47 +1.5
114,948 + EX31_RS00525 0.53 -0.4
114,951 + EX31_RS00525 0.54 -0.4
114,951 + EX31_RS00525 0.54 -0.6
114,952 - EX31_RS00525 0.54 +0.5
114,952 - EX31_RS00525 0.54 +1.2
114,952 - EX31_RS00525 0.54 -0.6
114,952 - EX31_RS00525 0.54 -0.5
114,955 + EX31_RS00525 0.54 +0.2
114,956 - EX31_RS00525 0.54 -0.8
114,956 - EX31_RS00525 0.54 +0.6
114,956 - EX31_RS00525 0.54 +0.9
114,956 - EX31_RS00525 0.54 +0.9
114,956 - EX31_RS00525 0.54 -0.5
115,195 - EX31_RS00525 0.84 +0.1
115,195 - EX31_RS00525 0.84 -0.0
115,250 - +0.0
115,283 - +0.5
115,297 - -0.9
115,297 - +0.0
115,368 - EX31_RS00530 0.21 -0.5
115,368 - EX31_RS00530 0.21 -0.7
115,437 - EX31_RS00530 0.48 +0.0

Or see this region's nucleotide sequence