Experiment: L-aspartic (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03105 and CCNA_03106 are separated by 56 nucleotides CCNA_03106 and CCNA_03107 are separated by 217 nucleotides CCNA_03107 and CCNA_03108 are separated by 124 nucleotides
CCNA_03105: CCNA_03105 - DnaJ domain protein, at 3,255,828 to 3,256,478
_03105
CCNA_03106: CCNA_03106 - BolA protein, at 3,256,535 to 3,256,810
_03106
CCNA_03107: CCNA_03107 - cytidine deaminase, at 3,257,028 to 3,257,450
_03107
CCNA_03108: CCNA_03108 - TonB-dependent outer membrane receptor, at 3,257,575 to 3,260,856
_03108
Position (kb)
3257
3258 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3256.051 kb on + strand, within CCNA_03105 at 3256.059 kb on - strand, within CCNA_03105 at 3256.091 kb on - strand, within CCNA_03105 at 3256.195 kb on + strand, within CCNA_03105 at 3256.197 kb on + strand, within CCNA_03105 at 3256.207 kb on + strand, within CCNA_03105 at 3256.212 kb on + strand, within CCNA_03105 at 3256.215 kb on - strand, within CCNA_03105 at 3256.220 kb on - strand, within CCNA_03105 at 3256.220 kb on - strand, within CCNA_03105 at 3256.220 kb on - strand, within CCNA_03105 at 3256.220 kb on - strand, within CCNA_03105 at 3256.282 kb on + strand, within CCNA_03105 at 3256.290 kb on - strand, within CCNA_03105 at 3256.338 kb on - strand, within CCNA_03105 at 3256.364 kb on + strand, within CCNA_03105 at 3256.383 kb on + strand, within CCNA_03105 at 3256.416 kb on - strand at 3256.418 kb on + strand at 3256.418 kb on + strand at 3256.482 kb on + strand at 3256.487 kb on + strand at 3256.487 kb on + strand at 3256.487 kb on + strand at 3256.495 kb on - strand at 3256.514 kb on + strand at 3256.596 kb on + strand, within CCNA_03106 at 3256.596 kb on + strand, within CCNA_03106 at 3256.604 kb on - strand, within CCNA_03106 at 3256.604 kb on - strand, within CCNA_03106 at 3256.604 kb on - strand, within CCNA_03106 at 3256.615 kb on - strand, within CCNA_03106 at 3256.691 kb on + strand, within CCNA_03106 at 3256.730 kb on - strand, within CCNA_03106 at 3256.756 kb on + strand, within CCNA_03106 at 3256.766 kb on + strand, within CCNA_03106 at 3256.768 kb on - strand, within CCNA_03106 at 3256.769 kb on - strand, within CCNA_03106 at 3256.805 kb on + strand at 3256.805 kb on + strand at 3256.811 kb on - strand at 3256.846 kb on - strand at 3256.913 kb on - strand at 3256.994 kb on - strand at 3257.004 kb on + strand at 3257.023 kb on - strand at 3257.063 kb on - strand at 3257.155 kb on + strand, within CCNA_03107 at 3257.160 kb on + strand, within CCNA_03107 at 3257.168 kb on - strand, within CCNA_03107 at 3257.168 kb on - strand, within CCNA_03107 at 3257.279 kb on - strand, within CCNA_03107 at 3257.279 kb on - strand, within CCNA_03107 at 3257.301 kb on + strand, within CCNA_03107 at 3257.301 kb on + strand, within CCNA_03107 at 3257.306 kb on + strand, within CCNA_03107 at 3257.306 kb on + strand, within CCNA_03107 at 3257.306 kb on + strand, within CCNA_03107 at 3257.347 kb on - strand, within CCNA_03107 at 3257.370 kb on + strand, within CCNA_03107 at 3257.433 kb on - strand at 3257.539 kb on - strand at 3257.641 kb on - strand at 3257.687 kb on + strand at 3257.707 kb on - strand at 3257.715 kb on + strand at 3257.734 kb on + strand at 3257.737 kb on + strand at 3257.754 kb on - strand at 3257.759 kb on - strand at 3257.889 kb on + strand at 3257.896 kb on + strand at 3257.937 kb on - strand, within CCNA_03108 at 3257.945 kb on + strand, within CCNA_03108 at 3258.030 kb on - strand, within CCNA_03108 at 3258.031 kb on + strand, within CCNA_03108 at 3258.032 kb on + strand, within CCNA_03108 at 3258.032 kb on + strand, within CCNA_03108 at 3258.039 kb on - strand, within CCNA_03108 at 3258.039 kb on - strand, within CCNA_03108 at 3258.040 kb on - strand, within CCNA_03108 at 3258.052 kb on + strand, within CCNA_03108 at 3258.068 kb on - strand, within CCNA_03108 at 3258.133 kb on - strand, within CCNA_03108 at 3258.153 kb on - strand, within CCNA_03108 at 3258.161 kb on + strand, within CCNA_03108 at 3258.224 kb on - strand, within CCNA_03108 at 3258.224 kb on - strand, within CCNA_03108 at 3258.232 kb on - strand, within CCNA_03108 at 3258.320 kb on + strand, within CCNA_03108 at 3258.400 kb on - strand, within CCNA_03108
Per-strain Table
Position Strand Gene LocusTag Fraction L-aspartic (N) remove 3,256,051 + CCNA_03105 0.34 +0.6 3,256,059 - CCNA_03105 0.35 +1.6 3,256,091 - CCNA_03105 0.40 +1.8 3,256,195 + CCNA_03105 0.56 +0.7 3,256,197 + CCNA_03105 0.57 -0.3 3,256,207 + CCNA_03105 0.58 -0.7 3,256,212 + CCNA_03105 0.59 -0.7 3,256,215 - CCNA_03105 0.59 +0.8 3,256,220 - CCNA_03105 0.60 +0.8 3,256,220 - CCNA_03105 0.60 +0.5 3,256,220 - CCNA_03105 0.60 +1.1 3,256,220 - CCNA_03105 0.60 +1.1 3,256,282 + CCNA_03105 0.70 -1.4 3,256,290 - CCNA_03105 0.71 +1.3 3,256,338 - CCNA_03105 0.78 +1.3 3,256,364 + CCNA_03105 0.82 +0.9 3,256,383 + CCNA_03105 0.85 +1.5 3,256,416 - +1.2 3,256,418 + +2.5 3,256,418 + +0.3 3,256,482 + +0.1 3,256,487 + +0.9 3,256,487 + +0.8 3,256,487 + +1.3 3,256,495 - +0.2 3,256,514 + -0.0 3,256,596 + CCNA_03106 0.22 -0.8 3,256,596 + CCNA_03106 0.22 -0.6 3,256,604 - CCNA_03106 0.25 -0.5 3,256,604 - CCNA_03106 0.25 +1.3 3,256,604 - CCNA_03106 0.25 +1.2 3,256,615 - CCNA_03106 0.29 -1.1 3,256,691 + CCNA_03106 0.57 +0.0 3,256,730 - CCNA_03106 0.71 +2.0 3,256,756 + CCNA_03106 0.80 +1.0 3,256,766 + CCNA_03106 0.84 +0.6 3,256,768 - CCNA_03106 0.84 -0.4 3,256,769 - CCNA_03106 0.85 -1.1 3,256,805 + +0.4 3,256,805 + +1.0 3,256,811 - -0.6 3,256,846 - +1.3 3,256,913 - -2.2 3,256,994 - +0.9 3,257,004 + +0.2 3,257,023 - +1.0 3,257,063 - +0.1 3,257,155 + CCNA_03107 0.30 +1.5 3,257,160 + CCNA_03107 0.31 +1.2 3,257,168 - CCNA_03107 0.33 +0.2 3,257,168 - CCNA_03107 0.33 +2.0 3,257,279 - CCNA_03107 0.59 +1.1 3,257,279 - CCNA_03107 0.59 +0.3 3,257,301 + CCNA_03107 0.65 +1.2 3,257,301 + CCNA_03107 0.65 +1.6 3,257,306 + CCNA_03107 0.66 +1.7 3,257,306 + CCNA_03107 0.66 +1.7 3,257,306 + CCNA_03107 0.66 +1.2 3,257,347 - CCNA_03107 0.75 +0.7 3,257,370 + CCNA_03107 0.81 +1.6 3,257,433 - +1.7 3,257,539 - +1.3 3,257,641 - +1.7 3,257,687 + -1.7 3,257,707 - +1.5 3,257,715 + -1.9 3,257,734 + -1.0 3,257,737 + -1.5 3,257,754 - +1.8 3,257,759 - +1.8 3,257,889 + +0.6 3,257,896 + -0.8 3,257,937 - CCNA_03108 0.11 +1.6 3,257,945 + CCNA_03108 0.11 -1.4 3,258,030 - CCNA_03108 0.14 +1.6 3,258,031 + CCNA_03108 0.14 -1.5 3,258,032 + CCNA_03108 0.14 -1.9 3,258,032 + CCNA_03108 0.14 -1.6 3,258,039 - CCNA_03108 0.14 +1.0 3,258,039 - CCNA_03108 0.14 +1.3 3,258,040 - CCNA_03108 0.14 +1.6 3,258,052 + CCNA_03108 0.15 +1.8 3,258,068 - CCNA_03108 0.15 +1.3 3,258,133 - CCNA_03108 0.17 +1.6 3,258,153 - CCNA_03108 0.18 +2.1 3,258,161 + CCNA_03108 0.18 -2.8 3,258,224 - CCNA_03108 0.20 +2.6 3,258,224 - CCNA_03108 0.20 +1.9 3,258,232 - CCNA_03108 0.20 +1.6 3,258,320 + CCNA_03108 0.23 -3.4 3,258,400 - CCNA_03108 0.25 +1.6
Or see this region's nucleotide sequence