Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02081

Experiment: L-aspartic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02080 and CCNA_02081 overlap by 4 nucleotidesCCNA_02081 and CCNA_02082 are separated by 84 nucleotidesCCNA_02082 and CCNA_02083 are separated by 133 nucleotides CCNA_02080: CCNA_02080 - Sec-independent protein translocase protein tatC, at 2,230,926 to 2,231,828 _02080 CCNA_02081: CCNA_02081 - Sec-independent protein translocase protein tatB, at 2,231,825 to 2,232,427 _02081 CCNA_02082: CCNA_02082 - Sec-independent protein translocase protein tatA, at 2,232,512 to 2,232,736 _02082 CCNA_02083: CCNA_02083 - chromosome segregation and condensation protein B scpB, at 2,232,870 to 2,233,535 _02083 Position (kb) 2231 2232 2233Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2230.844 kb on + strandat 2230.849 kb on + strandat 2230.852 kb on - strandat 2230.908 kb on - strandat 2230.940 kb on + strandat 2230.940 kb on + strandat 2230.948 kb on - strandat 2231.785 kb on + strandat 2231.892 kb on + strand, within CCNA_02081at 2231.900 kb on - strand, within CCNA_02081at 2231.900 kb on - strand, within CCNA_02081at 2231.954 kb on - strand, within CCNA_02081at 2231.969 kb on - strand, within CCNA_02081at 2231.992 kb on - strand, within CCNA_02081at 2232.023 kb on - strand, within CCNA_02081at 2232.023 kb on - strand, within CCNA_02081at 2232.096 kb on + strand, within CCNA_02081at 2232.101 kb on + strand, within CCNA_02081at 2232.137 kb on - strand, within CCNA_02081at 2232.290 kb on - strand, within CCNA_02081at 2232.443 kb on - strandat 2232.443 kb on - strandat 2232.443 kb on - strandat 2232.458 kb on - strandat 2232.511 kb on - strandat 2232.749 kb on + strandat 2232.764 kb on + strandat 2232.772 kb on - strandat 2232.772 kb on - strandat 2232.772 kb on - strandat 2232.794 kb on - strandat 2232.810 kb on - strandat 2232.821 kb on + strandat 2232.829 kb on - strandat 2232.834 kb on - strandat 2232.960 kb on + strand, within CCNA_02083at 2232.961 kb on - strand, within CCNA_02083at 2232.968 kb on - strand, within CCNA_02083at 2232.975 kb on + strand, within CCNA_02083at 2233.067 kb on - strand, within CCNA_02083at 2233.077 kb on - strand, within CCNA_02083at 2233.077 kb on - strand, within CCNA_02083at 2233.128 kb on - strand, within CCNA_02083at 2233.146 kb on + strand, within CCNA_02083at 2233.167 kb on + strand, within CCNA_02083at 2233.207 kb on + strand, within CCNA_02083at 2233.215 kb on - strand, within CCNA_02083at 2233.221 kb on - strand, within CCNA_02083at 2233.221 kb on - strand, within CCNA_02083at 2233.270 kb on + strand, within CCNA_02083at 2233.270 kb on + strand, within CCNA_02083at 2233.278 kb on - strand, within CCNA_02083at 2233.278 kb on - strand, within CCNA_02083at 2233.278 kb on - strand, within CCNA_02083at 2233.278 kb on - strand, within CCNA_02083at 2233.278 kb on - strand, within CCNA_02083at 2233.278 kb on - strand, within CCNA_02083at 2233.278 kb on - strand, within CCNA_02083at 2233.362 kb on + strand, within CCNA_02083at 2233.370 kb on - strand, within CCNA_02083at 2233.375 kb on + strand, within CCNA_02083

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Per-strain Table

Position Strand Gene LocusTag Fraction L-aspartic (N)
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2,230,844 + +0.5
2,230,849 + -0.4
2,230,852 - +1.2
2,230,908 - +1.1
2,230,940 + -0.2
2,230,940 + -0.2
2,230,948 - +1.5
2,231,785 + -3.3
2,231,892 + CCNA_02081 0.11 -2.5
2,231,900 - CCNA_02081 0.12 +1.6
2,231,900 - CCNA_02081 0.12 +1.5
2,231,954 - CCNA_02081 0.21 +2.2
2,231,969 - CCNA_02081 0.24 +2.1
2,231,992 - CCNA_02081 0.28 +1.2
2,232,023 - CCNA_02081 0.33 +1.4
2,232,023 - CCNA_02081 0.33 -0.2
2,232,096 + CCNA_02081 0.45 -1.3
2,232,101 + CCNA_02081 0.46 -2.9
2,232,137 - CCNA_02081 0.52 +2.2
2,232,290 - CCNA_02081 0.77 -2.9
2,232,443 - +2.4
2,232,443 - +2.0
2,232,443 - +1.4
2,232,458 - -3.7
2,232,511 - +1.7
2,232,749 + +1.2
2,232,764 + -2.2
2,232,772 - +2.1
2,232,772 - +1.7
2,232,772 - +2.2
2,232,794 - +1.0
2,232,810 - +0.4
2,232,821 + +0.1
2,232,829 - -0.3
2,232,834 - +1.2
2,232,960 + CCNA_02083 0.14 -1.2
2,232,961 - CCNA_02083 0.14 +0.7
2,232,968 - CCNA_02083 0.15 +0.7
2,232,975 + CCNA_02083 0.16 -2.5
2,233,067 - CCNA_02083 0.30 +0.6
2,233,077 - CCNA_02083 0.31 +0.3
2,233,077 - CCNA_02083 0.31 -0.1
2,233,128 - CCNA_02083 0.39 +0.8
2,233,146 + CCNA_02083 0.41 -0.8
2,233,167 + CCNA_02083 0.45 +0.1
2,233,207 + CCNA_02083 0.51 -3.2
2,233,215 - CCNA_02083 0.52 -0.2
2,233,221 - CCNA_02083 0.53 +0.2
2,233,221 - CCNA_02083 0.53 -0.5
2,233,270 + CCNA_02083 0.60 -1.0
2,233,270 + CCNA_02083 0.60 -0.2
2,233,278 - CCNA_02083 0.61 +0.8
2,233,278 - CCNA_02083 0.61 -0.1
2,233,278 - CCNA_02083 0.61 -0.6
2,233,278 - CCNA_02083 0.61 +1.1
2,233,278 - CCNA_02083 0.61 +0.3
2,233,278 - CCNA_02083 0.61 -0.2
2,233,278 - CCNA_02083 0.61 +0.4
2,233,362 + CCNA_02083 0.74 -0.9
2,233,370 - CCNA_02083 0.75 +0.3
2,233,375 + CCNA_02083 0.76 +1.0

Or see this region's nucleotide sequence