Experiment: L-aspartic (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02080 and CCNA_02081 overlap by 4 nucleotides CCNA_02081 and CCNA_02082 are separated by 84 nucleotides CCNA_02082 and CCNA_02083 are separated by 133 nucleotides
CCNA_02080: CCNA_02080 - Sec-independent protein translocase protein tatC, at 2,230,926 to 2,231,828
_02080
CCNA_02081: CCNA_02081 - Sec-independent protein translocase protein tatB, at 2,231,825 to 2,232,427
_02081
CCNA_02082: CCNA_02082 - Sec-independent protein translocase protein tatA, at 2,232,512 to 2,232,736
_02082
CCNA_02083: CCNA_02083 - chromosome segregation and condensation protein B scpB, at 2,232,870 to 2,233,535
_02083
Position (kb)
2231
2232
2233 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2230.844 kb on + strand at 2230.849 kb on + strand at 2230.852 kb on - strand at 2230.908 kb on - strand at 2230.940 kb on + strand at 2230.940 kb on + strand at 2230.948 kb on - strand at 2231.785 kb on + strand at 2231.892 kb on + strand, within CCNA_02081 at 2231.900 kb on - strand, within CCNA_02081 at 2231.900 kb on - strand, within CCNA_02081 at 2231.954 kb on - strand, within CCNA_02081 at 2231.969 kb on - strand, within CCNA_02081 at 2231.992 kb on - strand, within CCNA_02081 at 2232.023 kb on - strand, within CCNA_02081 at 2232.023 kb on - strand, within CCNA_02081 at 2232.096 kb on + strand, within CCNA_02081 at 2232.101 kb on + strand, within CCNA_02081 at 2232.137 kb on - strand, within CCNA_02081 at 2232.290 kb on - strand, within CCNA_02081 at 2232.443 kb on - strand at 2232.443 kb on - strand at 2232.443 kb on - strand at 2232.458 kb on - strand at 2232.511 kb on - strand at 2232.749 kb on + strand at 2232.764 kb on + strand at 2232.772 kb on - strand at 2232.772 kb on - strand at 2232.772 kb on - strand at 2232.794 kb on - strand at 2232.810 kb on - strand at 2232.821 kb on + strand at 2232.829 kb on - strand at 2232.834 kb on - strand at 2232.960 kb on + strand, within CCNA_02083 at 2232.961 kb on - strand, within CCNA_02083 at 2232.968 kb on - strand, within CCNA_02083 at 2232.975 kb on + strand, within CCNA_02083 at 2233.067 kb on - strand, within CCNA_02083 at 2233.077 kb on - strand, within CCNA_02083 at 2233.077 kb on - strand, within CCNA_02083 at 2233.128 kb on - strand, within CCNA_02083 at 2233.146 kb on + strand, within CCNA_02083 at 2233.167 kb on + strand, within CCNA_02083 at 2233.207 kb on + strand, within CCNA_02083 at 2233.215 kb on - strand, within CCNA_02083 at 2233.221 kb on - strand, within CCNA_02083 at 2233.221 kb on - strand, within CCNA_02083 at 2233.270 kb on + strand, within CCNA_02083 at 2233.270 kb on + strand, within CCNA_02083 at 2233.278 kb on - strand, within CCNA_02083 at 2233.278 kb on - strand, within CCNA_02083 at 2233.278 kb on - strand, within CCNA_02083 at 2233.278 kb on - strand, within CCNA_02083 at 2233.278 kb on - strand, within CCNA_02083 at 2233.278 kb on - strand, within CCNA_02083 at 2233.278 kb on - strand, within CCNA_02083 at 2233.362 kb on + strand, within CCNA_02083 at 2233.370 kb on - strand, within CCNA_02083 at 2233.375 kb on + strand, within CCNA_02083
Per-strain Table
Position Strand Gene LocusTag Fraction L-aspartic (N) remove 2,230,844 + +0.5 2,230,849 + -0.4 2,230,852 - +1.2 2,230,908 - +1.1 2,230,940 + -0.2 2,230,940 + -0.2 2,230,948 - +1.5 2,231,785 + -3.3 2,231,892 + CCNA_02081 0.11 -2.5 2,231,900 - CCNA_02081 0.12 +1.6 2,231,900 - CCNA_02081 0.12 +1.5 2,231,954 - CCNA_02081 0.21 +2.2 2,231,969 - CCNA_02081 0.24 +2.1 2,231,992 - CCNA_02081 0.28 +1.2 2,232,023 - CCNA_02081 0.33 +1.4 2,232,023 - CCNA_02081 0.33 -0.2 2,232,096 + CCNA_02081 0.45 -1.3 2,232,101 + CCNA_02081 0.46 -2.9 2,232,137 - CCNA_02081 0.52 +2.2 2,232,290 - CCNA_02081 0.77 -2.9 2,232,443 - +2.4 2,232,443 - +2.0 2,232,443 - +1.4 2,232,458 - -3.7 2,232,511 - +1.7 2,232,749 + +1.2 2,232,764 + -2.2 2,232,772 - +2.1 2,232,772 - +1.7 2,232,772 - +2.2 2,232,794 - +1.0 2,232,810 - +0.4 2,232,821 + +0.1 2,232,829 - -0.3 2,232,834 - +1.2 2,232,960 + CCNA_02083 0.14 -1.2 2,232,961 - CCNA_02083 0.14 +0.7 2,232,968 - CCNA_02083 0.15 +0.7 2,232,975 + CCNA_02083 0.16 -2.5 2,233,067 - CCNA_02083 0.30 +0.6 2,233,077 - CCNA_02083 0.31 +0.3 2,233,077 - CCNA_02083 0.31 -0.1 2,233,128 - CCNA_02083 0.39 +0.8 2,233,146 + CCNA_02083 0.41 -0.8 2,233,167 + CCNA_02083 0.45 +0.1 2,233,207 + CCNA_02083 0.51 -3.2 2,233,215 - CCNA_02083 0.52 -0.2 2,233,221 - CCNA_02083 0.53 +0.2 2,233,221 - CCNA_02083 0.53 -0.5 2,233,270 + CCNA_02083 0.60 -1.0 2,233,270 + CCNA_02083 0.60 -0.2 2,233,278 - CCNA_02083 0.61 +0.8 2,233,278 - CCNA_02083 0.61 -0.1 2,233,278 - CCNA_02083 0.61 -0.6 2,233,278 - CCNA_02083 0.61 +1.1 2,233,278 - CCNA_02083 0.61 +0.3 2,233,278 - CCNA_02083 0.61 -0.2 2,233,278 - CCNA_02083 0.61 +0.4 2,233,362 + CCNA_02083 0.74 -0.9 2,233,370 - CCNA_02083 0.75 +0.3 2,233,375 + CCNA_02083 0.76 +1.0
Or see this region's nucleotide sequence