Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01443

Experiment: L-aspartic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01442 and CCNA_01443 are separated by 7 nucleotidesCCNA_01443 and CCNA_01444 are separated by 87 nucleotides CCNA_01442: CCNA_01442 - N-acetyl-gamma-glutamyl-phosphate reductase, at 1,553,908 to 1,554,861 _01442 CCNA_01443: CCNA_01443 - hypothetical protein, at 1,554,869 to 1,555,501 _01443 CCNA_01444: CCNA_01444 - poly(3-hydroxyalkanoate) polymerase, at 1,555,589 to 1,557,607 _01444 Position (kb) 1554 1555 1556Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1553.872 kb on + strandat 1553.925 kb on + strandat 1554.624 kb on + strandat 1554.853 kb on + strandat 1554.853 kb on + strandat 1554.853 kb on + strandat 1554.856 kb on + strandat 1554.864 kb on - strandat 1554.864 kb on - strandat 1554.892 kb on - strandat 1554.907 kb on + strandat 1554.925 kb on + strandat 1554.933 kb on - strand, within CCNA_01443at 1554.992 kb on + strand, within CCNA_01443at 1555.000 kb on - strand, within CCNA_01443at 1555.098 kb on - strand, within CCNA_01443at 1555.170 kb on - strand, within CCNA_01443at 1555.172 kb on - strand, within CCNA_01443at 1555.220 kb on - strand, within CCNA_01443at 1555.282 kb on + strand, within CCNA_01443at 1555.292 kb on - strand, within CCNA_01443at 1555.304 kb on + strand, within CCNA_01443at 1555.435 kb on - strand, within CCNA_01443at 1555.469 kb on + strandat 1555.469 kb on + strandat 1555.469 kb on + strandat 1555.469 kb on + strandat 1555.469 kb on + strandat 1555.469 kb on + strandat 1555.469 kb on + strandat 1555.471 kb on - strandat 1555.476 kb on - strandat 1555.477 kb on - strandat 1555.477 kb on - strandat 1555.477 kb on - strandat 1555.477 kb on - strandat 1555.477 kb on - strandat 1555.477 kb on - strandat 1555.477 kb on - strandat 1555.477 kb on - strandat 1555.477 kb on - strandat 1555.477 kb on - strandat 1555.477 kb on - strandat 1555.524 kb on - strandat 1555.607 kb on - strandat 1555.639 kb on + strandat 1555.650 kb on + strandat 1555.693 kb on + strandat 1555.701 kb on - strandat 1555.701 kb on - strandat 1555.796 kb on - strand, within CCNA_01444at 1555.856 kb on + strand, within CCNA_01444at 1555.977 kb on - strand, within CCNA_01444at 1555.998 kb on - strand, within CCNA_01444at 1556.013 kb on + strand, within CCNA_01444at 1556.090 kb on - strand, within CCNA_01444at 1556.180 kb on - strand, within CCNA_01444at 1556.188 kb on - strand, within CCNA_01444at 1556.229 kb on - strand, within CCNA_01444at 1556.246 kb on + strand, within CCNA_01444at 1556.269 kb on + strand, within CCNA_01444at 1556.367 kb on + strand, within CCNA_01444at 1556.375 kb on - strand, within CCNA_01444at 1556.395 kb on + strand, within CCNA_01444at 1556.491 kb on - strand, within CCNA_01444

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Per-strain Table

Position Strand Gene LocusTag Fraction L-aspartic (N)
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1,553,872 + +0.7
1,553,925 + +1.1
1,554,624 + +2.6
1,554,853 + +0.8
1,554,853 + +0.1
1,554,853 + +0.9
1,554,856 + -0.0
1,554,864 - +0.2
1,554,864 - -1.9
1,554,892 - -0.3
1,554,907 + +1.3
1,554,925 + +0.5
1,554,933 - CCNA_01443 0.10 +0.4
1,554,992 + CCNA_01443 0.19 +0.9
1,555,000 - CCNA_01443 0.21 +0.7
1,555,098 - CCNA_01443 0.36 +0.7
1,555,170 - CCNA_01443 0.48 +0.3
1,555,172 - CCNA_01443 0.48 +0.1
1,555,220 - CCNA_01443 0.55 +1.0
1,555,282 + CCNA_01443 0.65 +0.0
1,555,292 - CCNA_01443 0.67 +0.8
1,555,304 + CCNA_01443 0.69 +2.8
1,555,435 - CCNA_01443 0.89 +1.6
1,555,469 + -0.6
1,555,469 + -2.1
1,555,469 + -0.6
1,555,469 + -0.2
1,555,469 + -1.3
1,555,469 + -0.0
1,555,469 + +0.6
1,555,471 - +0.7
1,555,476 - +1.9
1,555,477 - +1.2
1,555,477 - +1.0
1,555,477 - +1.8
1,555,477 - +0.9
1,555,477 - +1.1
1,555,477 - +1.2
1,555,477 - +1.3
1,555,477 - +0.5
1,555,477 - +1.6
1,555,477 - +2.4
1,555,477 - +1.6
1,555,524 - +2.6
1,555,607 - +0.7
1,555,639 + +1.2
1,555,650 + -0.1
1,555,693 + -1.6
1,555,701 - +1.9
1,555,701 - -0.2
1,555,796 - CCNA_01444 0.10 +0.3
1,555,856 + CCNA_01444 0.13 -0.2
1,555,977 - CCNA_01444 0.19 +0.5
1,555,998 - CCNA_01444 0.20 +1.6
1,556,013 + CCNA_01444 0.21 -1.4
1,556,090 - CCNA_01444 0.25 +2.2
1,556,180 - CCNA_01444 0.29 +0.6
1,556,188 - CCNA_01444 0.30 -0.1
1,556,229 - CCNA_01444 0.32 +0.0
1,556,246 + CCNA_01444 0.33 +0.3
1,556,269 + CCNA_01444 0.34 -0.2
1,556,367 + CCNA_01444 0.39 -1.5
1,556,375 - CCNA_01444 0.39 +2.1
1,556,395 + CCNA_01444 0.40 -0.5
1,556,491 - CCNA_01444 0.45 +1.2

Or see this region's nucleotide sequence