Experiment: L-aspartic (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01442 and CCNA_01443 are separated by 7 nucleotides CCNA_01443 and CCNA_01444 are separated by 87 nucleotides
CCNA_01442: CCNA_01442 - N-acetyl-gamma-glutamyl-phosphate reductase, at 1,553,908 to 1,554,861
_01442
CCNA_01443: CCNA_01443 - hypothetical protein, at 1,554,869 to 1,555,501
_01443
CCNA_01444: CCNA_01444 - poly(3-hydroxyalkanoate) polymerase, at 1,555,589 to 1,557,607
_01444
Position (kb)
1554
1555
1556 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1553.872 kb on + strand at 1553.925 kb on + strand at 1554.624 kb on + strand at 1554.853 kb on + strand at 1554.853 kb on + strand at 1554.853 kb on + strand at 1554.856 kb on + strand at 1554.864 kb on - strand at 1554.864 kb on - strand at 1554.892 kb on - strand at 1554.907 kb on + strand at 1554.925 kb on + strand at 1554.933 kb on - strand, within CCNA_01443 at 1554.992 kb on + strand, within CCNA_01443 at 1555.000 kb on - strand, within CCNA_01443 at 1555.098 kb on - strand, within CCNA_01443 at 1555.170 kb on - strand, within CCNA_01443 at 1555.172 kb on - strand, within CCNA_01443 at 1555.220 kb on - strand, within CCNA_01443 at 1555.282 kb on + strand, within CCNA_01443 at 1555.292 kb on - strand, within CCNA_01443 at 1555.304 kb on + strand, within CCNA_01443 at 1555.435 kb on - strand, within CCNA_01443 at 1555.469 kb on + strand at 1555.469 kb on + strand at 1555.469 kb on + strand at 1555.469 kb on + strand at 1555.469 kb on + strand at 1555.469 kb on + strand at 1555.469 kb on + strand at 1555.471 kb on - strand at 1555.476 kb on - strand at 1555.477 kb on - strand at 1555.477 kb on - strand at 1555.477 kb on - strand at 1555.477 kb on - strand at 1555.477 kb on - strand at 1555.477 kb on - strand at 1555.477 kb on - strand at 1555.477 kb on - strand at 1555.477 kb on - strand at 1555.477 kb on - strand at 1555.477 kb on - strand at 1555.524 kb on - strand at 1555.607 kb on - strand at 1555.639 kb on + strand at 1555.650 kb on + strand at 1555.693 kb on + strand at 1555.701 kb on - strand at 1555.701 kb on - strand at 1555.796 kb on - strand, within CCNA_01444 at 1555.856 kb on + strand, within CCNA_01444 at 1555.977 kb on - strand, within CCNA_01444 at 1555.998 kb on - strand, within CCNA_01444 at 1556.013 kb on + strand, within CCNA_01444 at 1556.090 kb on - strand, within CCNA_01444 at 1556.180 kb on - strand, within CCNA_01444 at 1556.188 kb on - strand, within CCNA_01444 at 1556.229 kb on - strand, within CCNA_01444 at 1556.246 kb on + strand, within CCNA_01444 at 1556.269 kb on + strand, within CCNA_01444 at 1556.367 kb on + strand, within CCNA_01444 at 1556.375 kb on - strand, within CCNA_01444 at 1556.395 kb on + strand, within CCNA_01444 at 1556.491 kb on - strand, within CCNA_01444
Per-strain Table
Position Strand Gene LocusTag Fraction L-aspartic (N) remove 1,553,872 + +0.7 1,553,925 + +1.1 1,554,624 + +2.6 1,554,853 + +0.8 1,554,853 + +0.1 1,554,853 + +0.9 1,554,856 + -0.0 1,554,864 - +0.2 1,554,864 - -1.9 1,554,892 - -0.3 1,554,907 + +1.3 1,554,925 + +0.5 1,554,933 - CCNA_01443 0.10 +0.4 1,554,992 + CCNA_01443 0.19 +0.9 1,555,000 - CCNA_01443 0.21 +0.7 1,555,098 - CCNA_01443 0.36 +0.7 1,555,170 - CCNA_01443 0.48 +0.3 1,555,172 - CCNA_01443 0.48 +0.1 1,555,220 - CCNA_01443 0.55 +1.0 1,555,282 + CCNA_01443 0.65 +0.0 1,555,292 - CCNA_01443 0.67 +0.8 1,555,304 + CCNA_01443 0.69 +2.8 1,555,435 - CCNA_01443 0.89 +1.6 1,555,469 + -0.6 1,555,469 + -2.1 1,555,469 + -0.6 1,555,469 + -0.2 1,555,469 + -1.3 1,555,469 + -0.0 1,555,469 + +0.6 1,555,471 - +0.7 1,555,476 - +1.9 1,555,477 - +1.2 1,555,477 - +1.0 1,555,477 - +1.8 1,555,477 - +0.9 1,555,477 - +1.1 1,555,477 - +1.2 1,555,477 - +1.3 1,555,477 - +0.5 1,555,477 - +1.6 1,555,477 - +2.4 1,555,477 - +1.6 1,555,524 - +2.6 1,555,607 - +0.7 1,555,639 + +1.2 1,555,650 + -0.1 1,555,693 + -1.6 1,555,701 - +1.9 1,555,701 - -0.2 1,555,796 - CCNA_01444 0.10 +0.3 1,555,856 + CCNA_01444 0.13 -0.2 1,555,977 - CCNA_01444 0.19 +0.5 1,555,998 - CCNA_01444 0.20 +1.6 1,556,013 + CCNA_01444 0.21 -1.4 1,556,090 - CCNA_01444 0.25 +2.2 1,556,180 - CCNA_01444 0.29 +0.6 1,556,188 - CCNA_01444 0.30 -0.1 1,556,229 - CCNA_01444 0.32 +0.0 1,556,246 + CCNA_01444 0.33 +0.3 1,556,269 + CCNA_01444 0.34 -0.2 1,556,367 + CCNA_01444 0.39 -1.5 1,556,375 - CCNA_01444 0.39 +2.1 1,556,395 + CCNA_01444 0.40 -0.5 1,556,491 - CCNA_01444 0.45 +1.2
Or see this region's nucleotide sequence