Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS13310

Experiment: R2A with nitrate 200 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrate 200 mM
3,305,178	+		CA265_RS13305	0.23	-0.4
3,305,201	+		CA265_RS13305	0.25	-1.5
3,305,203	+		CA265_RS13305	0.25	+0.6
3,305,258	-		CA265_RS13305	0.30	+0.7
3,305,296	+		CA265_RS13305	0.33	+0.4
3,305,296	+		CA265_RS13305	0.33	+0.4
3,305,297	-		CA265_RS13305	0.33	-0.1
3,305,323	+		CA265_RS13305	0.35	+1.4
3,305,417	+		CA265_RS13305	0.43	-0.5
3,305,417	+		CA265_RS13305	0.43	+1.1
3,305,418	-		CA265_RS13305	0.43	-0.5
3,305,424	-		CA265_RS13305	0.44	+0.5
3,305,476	+		CA265_RS13305	0.48	-0.8
3,305,477	-		CA265_RS13305	0.48	+1.6
3,305,477	-		CA265_RS13305	0.48	-1.0
3,305,477	-		CA265_RS13305	0.48	-0.4
3,305,514	-		CA265_RS13305	0.51	-1.8
3,305,516	-		CA265_RS13305	0.51	-2.4
3,305,523	-		CA265_RS13305	0.52	-0.5
3,305,537	-		CA265_RS13305	0.53	-0.5
3,305,553	-		CA265_RS13305	0.54	+0.7
3,305,584	+		CA265_RS13305	0.57	-0.4
3,305,584	+		CA265_RS13305	0.57	+0.2
3,305,585	-		CA265_RS13305	0.57	-0.8
3,305,585	-		CA265_RS13305	0.57	+1.1
3,305,585	-		CA265_RS13305	0.57	-0.3
3,305,705	+		CA265_RS13305	0.67	+0.1
3,305,715	+		CA265_RS13305	0.68	-0.5
3,305,725	+		CA265_RS13305	0.69	-0.5
3,305,794	+		CA265_RS13305	0.74	+0.0
3,305,814	-		CA265_RS13305	0.76	+0.3
3,305,901	+		CA265_RS13305	0.83	-0.2
3,305,902	-		CA265_RS13305	0.83	-1.7
3,305,944	-		CA265_RS13305	0.87	-0.7
3,305,945	-		CA265_RS13305	0.87	-0.3
3,305,955	-		CA265_RS13305	0.88	-0.5
3,305,989	+				-0.2
3,306,006	+				-2.8
3,306,009	-				+0.8
3,306,054	-				-0.3
3,306,070	-				+0.8
3,306,085	+				-0.1
3,306,114	-				+0.6
3,306,157	+				+0.1
3,306,255	-				+0.6
3,306,257	-				+0.3
3,306,282	+				-0.6
3,306,314	+				-0.3
3,306,314	+				+0.2
3,306,315	-				-0.6
3,306,369	+				-2.0
3,306,374	-				-0.1
3,306,374	-				+0.4
3,306,390	-		CA265_RS13310	0.10	-1.4
3,306,405	-		CA265_RS13310	0.11	-0.3
3,306,503	+		CA265_RS13310	0.15	+0.4
3,306,505	+		CA265_RS13310	0.15	-0.6
3,306,506	-		CA265_RS13310	0.15	-0.0
3,306,534	-		CA265_RS13310	0.16	+0.3
3,306,598	-		CA265_RS13310	0.19	-0.2
3,306,652	-		CA265_RS13310	0.21	-1.4
3,306,754	+		CA265_RS13310	0.26	+0.4
3,306,757	+		CA265_RS13310	0.26	+0.2
3,306,758	-		CA265_RS13310	0.26	+0.1
3,306,813	+		CA265_RS13310	0.28	-0.2
3,306,889	-		CA265_RS13310	0.31	+0.5
3,306,938	+		CA265_RS13310	0.33	-0.4
3,306,959	+		CA265_RS13310	0.34	-0.4
3,306,972	-		CA265_RS13310	0.35	-0.5
3,306,976	+		CA265_RS13310	0.35	+1.5
3,307,006	+		CA265_RS13310	0.36	-0.4
3,307,007	-		CA265_RS13310	0.36	-0.7
3,307,007	-		CA265_RS13310	0.36	-0.7
3,307,023	-		CA265_RS13310	0.37	+0.0
3,307,037	+		CA265_RS13310	0.37	+0.7
3,307,057	+		CA265_RS13310	0.38	+0.2
3,307,156	+		CA265_RS13310	0.42	-3.5
3,307,214	-		CA265_RS13310	0.45	-0.9
3,307,267	+		CA265_RS13310	0.47	+0.1
3,307,287	-		CA265_RS13310	0.48	-0.3
3,307,301	-		CA265_RS13310	0.49	+0.4
3,307,301	-		CA265_RS13310	0.49	+0.9
3,307,331	-		CA265_RS13310	0.50	+0.5
3,307,399	+		CA265_RS13310	0.53	+0.5
3,307,404	+		CA265_RS13310	0.53	-0.6
3,307,450	-		CA265_RS13310	0.55	+1.0
3,307,498	+		CA265_RS13310	0.57	-0.1
3,307,518	+		CA265_RS13310	0.58	-0.2
3,307,536	-		CA265_RS13310	0.58	+0.6
3,307,576	+		CA265_RS13310	0.60	-0.8
3,307,577	-				+1.6
3,307,650	-		CA265_RS13310	0.63	+0.6
3,307,669	-		CA265_RS13310	0.64	-1.7
3,307,690	+		CA265_RS13310	0.65	+1.7
3,307,691	-		CA265_RS13310	0.65	-0.6
3,307,695	-		CA265_RS13310	0.65	+0.2
3,307,734	-		CA265_RS13310	0.67	+2.2
3,307,734	-		CA265_RS13310	0.67	-0.9
3,307,748	+		CA265_RS13310	0.67	+0.3
3,307,767	+		CA265_RS13310	0.68	-0.3
3,307,799	-		CA265_RS13310	0.69	+1.1
3,307,802	+		CA265_RS13310	0.70	-0.1
3,307,803	-		CA265_RS13310	0.70	+0.7
3,307,820	-		CA265_RS13310	0.70	+0.3
3,307,851	+		CA265_RS13310	0.72	-1.0
3,307,966	-		CA265_RS13310	0.76	+0.5
3,308,114	+		CA265_RS13310	0.83	-0.5
3,308,115	-		CA265_RS13310	0.83	-1.1
3,308,194	-		CA265_RS13310	0.86	+0.1
3,308,246	+		CA265_RS13310	0.88	+0.5
3,308,246	+		CA265_RS13310	0.88	+0.4
3,308,302	+				+1.1
3,308,302	+				+0.4
3,308,303	-				-0.4
3,308,303	-				+0.2
3,308,318	+				+0.5
3,308,395	-				+0.3
3,308,459	+				+0.8
3,308,505	+				+0.0
3,308,534	+				+0.5
3,308,691	-				-0.6
3,308,713	+				+0.1
3,308,713	+				+0.1
3,308,713	+				-0.2
3,308,713	+				+0.9
3,308,713	+				+2.0
3,308,714	-				-0.9
3,308,716	+				-1.6
3,308,803	+				-0.9
3,308,803	+				+0.2
3,308,803	+				-0.3
3,308,803	+				-0.6
3,308,803	+				-0.4
3,308,804	-				+2.0
3,308,813	+				+1.7
3,308,816	-				-0.2
3,308,849	-		CA265_RS13315	0.11	-0.5
3,308,849	-		CA265_RS13315	0.11	+0.0
3,308,971	+		CA265_RS13315	0.21	-0.4
3,309,040	+		CA265_RS13315	0.27	-1.1
3,309,041	-		CA265_RS13315	0.27	-0.1
3,309,053	-		CA265_RS13315	0.28	-1.3
3,309,095	-		CA265_RS13315	0.31	-0.6
3,309,171	+		CA265_RS13315	0.38	+1.4
3,309,197	-		CA265_RS13315	0.40	+0.4
3,309,216	-		CA265_RS13315	0.41	-0.5
3,309,222	-		CA265_RS13315	0.42	+0.0
3,309,258	-		CA265_RS13315	0.45	-1.0
3,309,319	+		CA265_RS13315	0.50	-0.5
3,309,319	+		CA265_RS13315	0.50	+0.1
3,309,320	-		CA265_RS13315	0.50	-0.9
3,309,321	+		CA265_RS13315	0.50	-0.2
3,309,321	+		CA265_RS13315	0.50	+0.8
3,309,321	+		CA265_RS13315	0.50	-0.6
3,309,321	+		CA265_RS13315	0.50	-1.0
3,309,322	-		CA265_RS13315	0.50	-0.2
3,309,371	+		CA265_RS13315	0.54	-1.5
3,309,373	+		CA265_RS13315	0.54	-0.4
3,309,417	-		CA265_RS13315	0.58	-0.6
3,309,506	-		CA265_RS13315	0.65	+0.8