Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS03990

Experiment: R2A with nitrate 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS03985 and CA265_RS03990 overlap by 1 nucleotidesCA265_RS03990 and CA265_RS03995 are separated by 32 nucleotides CA265_RS03985: CA265_RS03985 - hypothetical protein, at 951,332 to 953,290 _RS03985 CA265_RS03990: CA265_RS03990 - hypothetical protein, at 953,290 to 954,990 _RS03990 CA265_RS03995: CA265_RS03995 - hypothetical protein, at 955,023 to 956,654 _RS03995 Position (kb) 953 954 955Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 952.317 kb on - strand, within CA265_RS03985at 952.333 kb on + strand, within CA265_RS03985at 952.353 kb on + strand, within CA265_RS03985at 952.388 kb on - strand, within CA265_RS03985at 952.412 kb on - strand, within CA265_RS03985at 952.414 kb on + strand, within CA265_RS03985at 952.415 kb on - strand, within CA265_RS03985at 952.436 kb on - strand, within CA265_RS03985at 952.441 kb on - strand, within CA265_RS03985at 952.478 kb on - strand, within CA265_RS03985at 952.478 kb on - strand, within CA265_RS03985at 952.481 kb on + strand, within CA265_RS03985at 952.610 kb on + strand, within CA265_RS03985at 952.611 kb on - strand, within CA265_RS03985at 952.660 kb on + strand, within CA265_RS03985at 952.669 kb on + strand, within CA265_RS03985at 952.669 kb on + strand, within CA265_RS03985at 952.742 kb on - strand, within CA265_RS03985at 952.759 kb on - strand, within CA265_RS03985at 952.812 kb on - strandat 952.853 kb on + strand, within CA265_RS03985at 952.854 kb on - strand, within CA265_RS03985at 952.856 kb on - strand, within CA265_RS03985at 952.859 kb on - strand, within CA265_RS03985at 952.917 kb on + strand, within CA265_RS03985at 952.929 kb on + strand, within CA265_RS03985at 952.955 kb on - strand, within CA265_RS03985at 952.992 kb on - strand, within CA265_RS03985at 953.041 kb on + strand, within CA265_RS03985at 953.049 kb on + strand, within CA265_RS03985at 953.050 kb on - strand, within CA265_RS03985at 953.084 kb on + strand, within CA265_RS03985at 953.088 kb on + strand, within CA265_RS03985at 953.089 kb on - strand, within CA265_RS03985at 953.089 kb on - strand, within CA265_RS03985at 953.097 kb on + strandat 953.202 kb on + strandat 953.202 kb on + strandat 953.249 kb on - strandat 953.252 kb on + strandat 953.252 kb on + strandat 953.253 kb on - strandat 953.257 kb on + strandat 953.258 kb on - strandat 953.321 kb on + strandat 953.325 kb on + strandat 953.330 kb on + strandat 953.330 kb on + strandat 953.330 kb on + strandat 953.454 kb on + strandat 953.505 kb on + strand, within CA265_RS03990at 953.539 kb on + strand, within CA265_RS03990at 953.545 kb on - strand, within CA265_RS03990at 953.589 kb on - strand, within CA265_RS03990at 953.595 kb on + strand, within CA265_RS03990at 953.655 kb on + strand, within CA265_RS03990at 953.680 kb on + strand, within CA265_RS03990at 953.681 kb on - strand, within CA265_RS03990at 953.691 kb on - strand, within CA265_RS03990at 953.758 kb on - strand, within CA265_RS03990at 953.762 kb on - strand, within CA265_RS03990at 953.769 kb on + strand, within CA265_RS03990at 953.770 kb on - strand, within CA265_RS03990at 953.829 kb on + strand, within CA265_RS03990at 953.852 kb on + strand, within CA265_RS03990at 953.882 kb on + strand, within CA265_RS03990at 953.882 kb on + strand, within CA265_RS03990at 953.908 kb on + strand, within CA265_RS03990at 953.929 kb on + strand, within CA265_RS03990at 954.084 kb on - strand, within CA265_RS03990at 954.084 kb on - strand, within CA265_RS03990at 954.085 kb on + strand, within CA265_RS03990at 954.086 kb on - strand, within CA265_RS03990at 954.086 kb on - strand, within CA265_RS03990at 954.086 kb on - strand, within CA265_RS03990at 954.086 kb on - strand, within CA265_RS03990at 954.130 kb on - strand, within CA265_RS03990at 954.132 kb on + strand, within CA265_RS03990at 954.151 kb on - strand, within CA265_RS03990at 954.270 kb on - strand, within CA265_RS03990at 954.274 kb on - strand, within CA265_RS03990at 954.287 kb on + strand, within CA265_RS03990at 954.297 kb on + strand, within CA265_RS03990at 954.298 kb on - strand, within CA265_RS03990at 954.381 kb on + strand, within CA265_RS03990at 954.476 kb on + strand, within CA265_RS03990at 954.485 kb on - strand, within CA265_RS03990at 954.497 kb on + strand, within CA265_RS03990at 954.502 kb on - strand, within CA265_RS03990at 954.505 kb on - strand, within CA265_RS03990at 954.517 kb on - strand, within CA265_RS03990at 954.528 kb on + strand, within CA265_RS03990at 954.528 kb on + strand, within CA265_RS03990at 954.536 kb on + strand, within CA265_RS03990at 954.536 kb on + strand, within CA265_RS03990at 954.601 kb on + strand, within CA265_RS03990at 954.601 kb on + strand, within CA265_RS03990at 954.675 kb on + strand, within CA265_RS03990at 954.747 kb on - strand, within CA265_RS03990at 954.751 kb on - strand, within CA265_RS03990at 954.751 kb on - strand, within CA265_RS03990at 954.762 kb on + strand, within CA265_RS03990at 954.763 kb on - strand, within CA265_RS03990at 954.793 kb on + strand, within CA265_RS03990at 954.794 kb on - strand, within CA265_RS03990at 954.797 kb on + strand, within CA265_RS03990at 954.797 kb on + strand, within CA265_RS03990at 954.819 kb on - strand, within CA265_RS03990at 954.820 kb on + strand, within CA265_RS03990at 954.850 kb on - strandat 954.850 kb on - strandat 954.887 kb on + strandat 954.888 kb on - strandat 954.904 kb on + strandat 954.956 kb on - strandat 955.073 kb on + strandat 955.077 kb on - strandat 955.103 kb on + strandat 955.116 kb on - strandat 955.116 kb on - strandat 955.122 kb on - strandat 955.122 kb on - strandat 955.124 kb on - strandat 955.124 kb on - strandat 955.199 kb on + strand, within CA265_RS03995at 955.213 kb on + strand, within CA265_RS03995at 955.307 kb on - strand, within CA265_RS03995at 955.452 kb on + strand, within CA265_RS03995at 955.455 kb on - strand, within CA265_RS03995at 955.480 kb on + strand, within CA265_RS03995at 955.712 kb on - strand, within CA265_RS03995at 955.756 kb on + strand, within CA265_RS03995at 955.756 kb on + strand, within CA265_RS03995at 955.766 kb on + strand, within CA265_RS03995at 955.766 kb on + strand, within CA265_RS03995at 955.766 kb on + strand, within CA265_RS03995at 955.793 kb on - strand, within CA265_RS03995at 955.822 kb on - strand, within CA265_RS03995at 955.822 kb on - strand, within CA265_RS03995at 955.832 kb on - strand, within CA265_RS03995at 955.864 kb on - strand, within CA265_RS03995at 955.864 kb on - strand, within CA265_RS03995at 955.864 kb on - strand, within CA265_RS03995at 955.892 kb on - strand, within CA265_RS03995

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with nitrate 200 mM
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952,317 - CA265_RS03985 0.50 -1.0
952,333 + CA265_RS03985 0.51 -0.6
952,353 + CA265_RS03985 0.52 +0.9
952,388 - CA265_RS03985 0.54 +0.1
952,412 - CA265_RS03985 0.55 +0.7
952,414 + CA265_RS03985 0.55 +0.2
952,415 - CA265_RS03985 0.55 -1.2
952,436 - CA265_RS03985 0.56 -1.3
952,441 - CA265_RS03985 0.57 +0.1
952,478 - CA265_RS03985 0.58 -0.7
952,478 - CA265_RS03985 0.58 -0.5
952,481 + CA265_RS03985 0.59 -0.8
952,610 + CA265_RS03985 0.65 +0.4
952,611 - CA265_RS03985 0.65 -0.1
952,660 + CA265_RS03985 0.68 -1.0
952,669 + CA265_RS03985 0.68 +1.2
952,669 + CA265_RS03985 0.68 +0.2
952,742 - CA265_RS03985 0.72 +0.2
952,759 - CA265_RS03985 0.73 +0.4
952,812 - +2.2
952,853 + CA265_RS03985 0.78 -0.9
952,854 - CA265_RS03985 0.78 -0.7
952,856 - CA265_RS03985 0.78 +0.9
952,859 - CA265_RS03985 0.78 -1.7
952,917 + CA265_RS03985 0.81 +0.4
952,929 + CA265_RS03985 0.82 +0.2
952,955 - CA265_RS03985 0.83 -0.7
952,992 - CA265_RS03985 0.85 -0.9
953,041 + CA265_RS03985 0.87 +0.5
953,049 + CA265_RS03985 0.88 +0.5
953,050 - CA265_RS03985 0.88 +0.2
953,084 + CA265_RS03985 0.89 +0.9
953,088 + CA265_RS03985 0.90 -0.7
953,089 - CA265_RS03985 0.90 -0.3
953,089 - CA265_RS03985 0.90 -1.0
953,097 + +0.2
953,202 + -0.6
953,202 + +1.6
953,249 - -0.1
953,252 + +0.4
953,252 + +0.1
953,253 - +0.9
953,257 + +1.0
953,258 - +0.4
953,321 + +0.8
953,325 + -0.1
953,330 + -0.1
953,330 + +0.5
953,330 + +0.7
953,454 + +0.6
953,505 + CA265_RS03990 0.13 +0.1
953,539 + CA265_RS03990 0.15 -1.0
953,545 - CA265_RS03990 0.15 -0.2
953,589 - CA265_RS03990 0.18 -1.0
953,595 + CA265_RS03990 0.18 +0.2
953,655 + CA265_RS03990 0.21 -0.1
953,680 + CA265_RS03990 0.23 -2.4
953,681 - CA265_RS03990 0.23 -0.2
953,691 - CA265_RS03990 0.24 -1.4
953,758 - CA265_RS03990 0.28 -0.7
953,762 - CA265_RS03990 0.28 +0.3
953,769 + CA265_RS03990 0.28 +1.0
953,770 - CA265_RS03990 0.28 -0.4
953,829 + CA265_RS03990 0.32 -0.2
953,852 + CA265_RS03990 0.33 -0.2
953,882 + CA265_RS03990 0.35 +0.1
953,882 + CA265_RS03990 0.35 -0.0
953,908 + CA265_RS03990 0.36 -0.3
953,929 + CA265_RS03990 0.38 +1.3
954,084 - CA265_RS03990 0.47 -0.1
954,084 - CA265_RS03990 0.47 +0.7
954,085 + CA265_RS03990 0.47 -0.4
954,086 - CA265_RS03990 0.47 +0.2
954,086 - CA265_RS03990 0.47 +1.9
954,086 - CA265_RS03990 0.47 +0.6
954,086 - CA265_RS03990 0.47 -0.3
954,130 - CA265_RS03990 0.49 +0.5
954,132 + CA265_RS03990 0.50 -0.6
954,151 - CA265_RS03990 0.51 +0.0
954,270 - CA265_RS03990 0.58 +1.6
954,274 - CA265_RS03990 0.58 -0.0
954,287 + CA265_RS03990 0.59 +0.4
954,297 + CA265_RS03990 0.59 +0.2
954,298 - CA265_RS03990 0.59 -0.3
954,381 + CA265_RS03990 0.64 -2.5
954,476 + CA265_RS03990 0.70 +1.0
954,485 - CA265_RS03990 0.70 +0.1
954,497 + CA265_RS03990 0.71 +0.5
954,502 - CA265_RS03990 0.71 -0.3
954,505 - CA265_RS03990 0.71 -1.7
954,517 - CA265_RS03990 0.72 -0.3
954,528 + CA265_RS03990 0.73 +1.0
954,528 + CA265_RS03990 0.73 +0.5
954,536 + CA265_RS03990 0.73 +0.5
954,536 + CA265_RS03990 0.73 +0.2
954,601 + CA265_RS03990 0.77 +0.0
954,601 + CA265_RS03990 0.77 +0.3
954,675 + CA265_RS03990 0.81 +0.0
954,747 - CA265_RS03990 0.86 +0.6
954,751 - CA265_RS03990 0.86 -1.0
954,751 - CA265_RS03990 0.86 +0.1
954,762 + CA265_RS03990 0.87 -0.2
954,763 - CA265_RS03990 0.87 -0.1
954,793 + CA265_RS03990 0.88 -0.4
954,794 - CA265_RS03990 0.88 -1.6
954,797 + CA265_RS03990 0.89 -0.4
954,797 + CA265_RS03990 0.89 +1.0
954,819 - CA265_RS03990 0.90 +0.7
954,820 + CA265_RS03990 0.90 -0.7
954,850 - -0.1
954,850 - +0.2
954,887 + +0.4
954,888 - -1.0
954,904 + -0.2
954,956 - -0.9
955,073 + -0.1
955,077 - -0.2
955,103 + -0.8
955,116 - -0.3
955,116 - -0.0
955,122 - +0.1
955,122 - -1.5
955,124 - -0.4
955,124 - +0.2
955,199 + CA265_RS03995 0.11 -2.8
955,213 + CA265_RS03995 0.12 -2.2
955,307 - CA265_RS03995 0.17 -1.1
955,452 + CA265_RS03995 0.26 -1.0
955,455 - CA265_RS03995 0.26 -0.2
955,480 + CA265_RS03995 0.28 +0.3
955,712 - CA265_RS03995 0.42 -0.0
955,756 + CA265_RS03995 0.45 +0.0
955,756 + CA265_RS03995 0.45 +0.2
955,766 + CA265_RS03995 0.46 -0.5
955,766 + CA265_RS03995 0.46 +0.0
955,766 + CA265_RS03995 0.46 +1.1
955,793 - CA265_RS03995 0.47 -1.8
955,822 - CA265_RS03995 0.49 -0.0
955,822 - CA265_RS03995 0.49 +0.6
955,832 - CA265_RS03995 0.50 -0.9
955,864 - CA265_RS03995 0.52 -0.9
955,864 - CA265_RS03995 0.52 -0.1
955,864 - CA265_RS03995 0.52 -0.1
955,892 - CA265_RS03995 0.53 +0.8

Or see this region's nucleotide sequence