Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS01105

Experiment: R2A with nitrate 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS01100 and CA265_RS01105 are separated by 29 nucleotidesCA265_RS01105 and CA265_RS01110 are separated by 30 nucleotides CA265_RS01100: CA265_RS01100 - transcriptional regulator, at 278,651 to 279,040 _RS01100 CA265_RS01105: CA265_RS01105 - hypothetical protein, at 279,070 to 280,968 _RS01105 CA265_RS01110: CA265_RS01110 - hypothetical protein, at 280,999 to 283,446 _RS01110 Position (kb) 279 280 281Strain fitness (log2 ratio) -2 -1 0 1 2at 278.136 kb on - strandat 278.162 kb on - strandat 278.177 kb on + strandat 278.210 kb on + strandat 278.211 kb on - strandat 278.211 kb on - strandat 278.211 kb on - strandat 278.222 kb on + strandat 278.234 kb on + strandat 278.234 kb on + strandat 278.294 kb on - strandat 278.326 kb on - strandat 278.376 kb on + strandat 278.391 kb on + strandat 278.391 kb on + strandat 278.392 kb on - strandat 278.468 kb on - strandat 278.497 kb on + strandat 278.640 kb on - strandat 278.660 kb on - strandat 278.740 kb on + strand, within CA265_RS01100at 278.838 kb on + strand, within CA265_RS01100at 278.838 kb on + strand, within CA265_RS01100at 278.838 kb on + strand, within CA265_RS01100at 278.839 kb on - strand, within CA265_RS01100at 278.839 kb on - strand, within CA265_RS01100at 278.871 kb on - strand, within CA265_RS01100at 278.872 kb on + strand, within CA265_RS01100at 278.873 kb on - strand, within CA265_RS01100at 278.913 kb on + strand, within CA265_RS01100at 278.926 kb on - strand, within CA265_RS01100at 278.930 kb on - strand, within CA265_RS01100at 278.936 kb on + strand, within CA265_RS01100at 278.958 kb on + strand, within CA265_RS01100at 279.012 kb on + strandat 279.013 kb on - strandat 279.039 kb on - strandat 279.192 kb on + strandat 279.260 kb on + strand, within CA265_RS01105at 279.266 kb on + strand, within CA265_RS01105at 279.267 kb on - strand, within CA265_RS01105at 279.267 kb on - strand, within CA265_RS01105at 279.422 kb on - strand, within CA265_RS01105at 279.438 kb on - strand, within CA265_RS01105at 279.485 kb on + strand, within CA265_RS01105at 279.500 kb on + strand, within CA265_RS01105at 279.500 kb on + strand, within CA265_RS01105at 279.501 kb on - strand, within CA265_RS01105at 279.501 kb on - strand, within CA265_RS01105at 279.501 kb on - strand, within CA265_RS01105at 279.503 kb on - strand, within CA265_RS01105at 279.519 kb on + strand, within CA265_RS01105at 279.520 kb on - strand, within CA265_RS01105at 279.520 kb on - strand, within CA265_RS01105at 279.585 kb on - strand, within CA265_RS01105at 279.671 kb on + strand, within CA265_RS01105at 279.752 kb on - strand, within CA265_RS01105at 279.759 kb on - strand, within CA265_RS01105at 279.767 kb on + strand, within CA265_RS01105at 279.879 kb on - strand, within CA265_RS01105at 279.946 kb on + strand, within CA265_RS01105at 279.947 kb on - strand, within CA265_RS01105at 279.947 kb on - strand, within CA265_RS01105at 280.046 kb on + strand, within CA265_RS01105at 280.047 kb on - strand, within CA265_RS01105at 280.050 kb on - strand, within CA265_RS01105at 280.092 kb on + strand, within CA265_RS01105at 280.137 kb on + strand, within CA265_RS01105at 280.161 kb on + strand, within CA265_RS01105at 280.253 kb on + strand, within CA265_RS01105at 280.341 kb on + strand, within CA265_RS01105at 280.352 kb on + strand, within CA265_RS01105at 280.383 kb on + strand, within CA265_RS01105at 280.455 kb on + strand, within CA265_RS01105at 280.478 kb on + strand, within CA265_RS01105at 280.515 kb on + strand, within CA265_RS01105at 280.587 kb on + strand, within CA265_RS01105at 280.587 kb on + strand, within CA265_RS01105at 280.588 kb on - strand, within CA265_RS01105at 280.591 kb on + strand, within CA265_RS01105at 280.591 kb on + strand, within CA265_RS01105at 280.591 kb on + strand, within CA265_RS01105at 280.591 kb on + strand, within CA265_RS01105at 280.591 kb on + strand, within CA265_RS01105at 280.592 kb on - strand, within CA265_RS01105at 280.592 kb on - strand, within CA265_RS01105at 280.592 kb on - strand, within CA265_RS01105at 280.642 kb on - strand, within CA265_RS01105at 280.681 kb on + strand, within CA265_RS01105at 280.681 kb on + strand, within CA265_RS01105at 280.719 kb on + strand, within CA265_RS01105at 280.726 kb on - strand, within CA265_RS01105at 280.739 kb on + strand, within CA265_RS01105at 280.740 kb on - strand, within CA265_RS01105at 280.803 kb on + strandat 280.807 kb on - strandat 280.828 kb on + strandat 280.937 kb on - strandat 280.966 kb on + strandat 281.005 kb on + strandat 281.006 kb on - strandat 281.006 kb on - strandat 281.008 kb on - strandat 281.036 kb on + strandat 281.040 kb on + strandat 281.224 kb on + strandat 281.345 kb on + strand, within CA265_RS01110at 281.400 kb on + strand, within CA265_RS01110at 281.400 kb on + strand, within CA265_RS01110at 281.401 kb on - strand, within CA265_RS01110at 281.401 kb on - strand, within CA265_RS01110at 281.439 kb on + strand, within CA265_RS01110at 281.456 kb on + strand, within CA265_RS01110at 281.457 kb on - strand, within CA265_RS01110at 281.478 kb on + strand, within CA265_RS01110at 281.648 kb on - strand, within CA265_RS01110at 281.673 kb on - strand, within CA265_RS01110at 281.794 kb on - strand, within CA265_RS01110at 281.824 kb on - strand, within CA265_RS01110at 281.883 kb on + strand, within CA265_RS01110at 281.883 kb on + strand, within CA265_RS01110at 281.883 kb on + strand, within CA265_RS01110at 281.962 kb on + strand, within CA265_RS01110at 281.963 kb on - strand, within CA265_RS01110at 281.963 kb on - strand, within CA265_RS01110

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with nitrate 200 mM
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278,136 - -2.5
278,162 - +1.6
278,177 + -0.5
278,210 + -0.1
278,211 - +0.9
278,211 - -0.8
278,211 - -0.3
278,222 + +0.2
278,234 + -2.2
278,234 + +0.6
278,294 - -0.4
278,326 - +0.6
278,376 + -0.0
278,391 + +0.5
278,391 + -0.4
278,392 - +0.6
278,468 - +2.2
278,497 + +0.0
278,640 - -1.0
278,660 - -0.8
278,740 + CA265_RS01100 0.23 +0.8
278,838 + CA265_RS01100 0.48 +0.8
278,838 + CA265_RS01100 0.48 +0.1
278,838 + CA265_RS01100 0.48 -0.4
278,839 - CA265_RS01100 0.48 -0.4
278,839 - CA265_RS01100 0.48 -0.6
278,871 - CA265_RS01100 0.56 +0.4
278,872 + CA265_RS01100 0.57 -0.2
278,873 - CA265_RS01100 0.57 -0.1
278,913 + CA265_RS01100 0.67 -1.5
278,926 - CA265_RS01100 0.71 -0.3
278,930 - CA265_RS01100 0.72 +0.6
278,936 + CA265_RS01100 0.73 +0.0
278,958 + CA265_RS01100 0.79 +0.1
279,012 + +0.5
279,013 - +1.1
279,039 - -0.1
279,192 + +1.0
279,260 + CA265_RS01105 0.10 +0.2
279,266 + CA265_RS01105 0.10 +0.0
279,267 - CA265_RS01105 0.10 +1.5
279,267 - CA265_RS01105 0.10 +0.6
279,422 - CA265_RS01105 0.19 +1.1
279,438 - CA265_RS01105 0.19 -0.3
279,485 + CA265_RS01105 0.22 -0.7
279,500 + CA265_RS01105 0.23 -0.6
279,500 + CA265_RS01105 0.23 +0.2
279,501 - CA265_RS01105 0.23 -1.0
279,501 - CA265_RS01105 0.23 -1.5
279,501 - CA265_RS01105 0.23 +0.3
279,503 - CA265_RS01105 0.23 +1.0
279,519 + CA265_RS01105 0.24 -0.3
279,520 - CA265_RS01105 0.24 +0.4
279,520 - CA265_RS01105 0.24 -0.1
279,585 - CA265_RS01105 0.27 +0.1
279,671 + CA265_RS01105 0.32 +0.2
279,752 - CA265_RS01105 0.36 -0.8
279,759 - CA265_RS01105 0.36 -0.0
279,767 + CA265_RS01105 0.37 -0.4
279,879 - CA265_RS01105 0.43 +0.8
279,946 + CA265_RS01105 0.46 +0.0
279,947 - CA265_RS01105 0.46 -1.3
279,947 - CA265_RS01105 0.46 -1.5
280,046 + CA265_RS01105 0.51 -1.3
280,047 - CA265_RS01105 0.51 +0.0
280,050 - CA265_RS01105 0.52 +1.4
280,092 + CA265_RS01105 0.54 -1.1
280,137 + CA265_RS01105 0.56 +0.0
280,161 + CA265_RS01105 0.57 -2.0
280,253 + CA265_RS01105 0.62 -0.6
280,341 + CA265_RS01105 0.67 -0.2
280,352 + CA265_RS01105 0.68 -1.0
280,383 + CA265_RS01105 0.69 -0.8
280,455 + CA265_RS01105 0.73 -0.7
280,478 + CA265_RS01105 0.74 -1.7
280,515 + CA265_RS01105 0.76 -0.4
280,587 + CA265_RS01105 0.80 +0.2
280,587 + CA265_RS01105 0.80 +0.3
280,588 - CA265_RS01105 0.80 -1.5
280,591 + CA265_RS01105 0.80 -0.1
280,591 + CA265_RS01105 0.80 +0.1
280,591 + CA265_RS01105 0.80 +0.1
280,591 + CA265_RS01105 0.80 +0.0
280,591 + CA265_RS01105 0.80 +0.1
280,592 - CA265_RS01105 0.80 -0.1
280,592 - CA265_RS01105 0.80 +0.2
280,592 - CA265_RS01105 0.80 +0.8
280,642 - CA265_RS01105 0.83 -1.0
280,681 + CA265_RS01105 0.85 -0.0
280,681 + CA265_RS01105 0.85 -0.2
280,719 + CA265_RS01105 0.87 -0.8
280,726 - CA265_RS01105 0.87 -0.8
280,739 + CA265_RS01105 0.88 -0.1
280,740 - CA265_RS01105 0.88 +0.3
280,803 + -0.5
280,807 - +0.8
280,828 + -0.1
280,937 - +0.0
280,966 + -1.2
281,005 + +0.6
281,006 - -0.5
281,006 - +0.1
281,008 - +1.0
281,036 + +0.4
281,040 + +0.0
281,224 + +0.9
281,345 + CA265_RS01110 0.14 -0.9
281,400 + CA265_RS01110 0.16 +0.6
281,400 + CA265_RS01110 0.16 +1.4
281,401 - CA265_RS01110 0.16 -0.0
281,401 - CA265_RS01110 0.16 -1.9
281,439 + CA265_RS01110 0.18 -0.4
281,456 + CA265_RS01110 0.19 +1.0
281,457 - CA265_RS01110 0.19 +0.1
281,478 + CA265_RS01110 0.20 +0.8
281,648 - CA265_RS01110 0.27 +2.0
281,673 - CA265_RS01110 0.28 +0.2
281,794 - CA265_RS01110 0.32 -0.0
281,824 - CA265_RS01110 0.34 +0.5
281,883 + CA265_RS01110 0.36 -0.6
281,883 + CA265_RS01110 0.36 -0.5
281,883 + CA265_RS01110 0.36 +0.8
281,962 + CA265_RS01110 0.39 -1.1
281,963 - CA265_RS01110 0.39 +1.1
281,963 - CA265_RS01110 0.39 +0.6

Or see this region's nucleotide sequence