Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS00020

Experiment: R2A with nitrate 200 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA265_RS00010 and CA265_RS00015 are separated by 39 nucleotidesCA265_RS00015 and CA265_RS00020 are separated by 85 nucleotidesCA265_RS00020 and CA265_RS00025 are separated by 3 nucleotidesCA265_RS00025 and CA265_RS00030 are separated by 82 nucleotides CA265_RS00010: CA265_RS00010 - DNA mismatch repair protein MutT, at 1,565 to 2,113 _RS00010 CA265_RS00015: CA265_RS00015 - hypothetical protein, at 2,153 to 2,542 _RS00015 CA265_RS00020: CA265_RS00020 - methanol dehydrogenase, at 2,628 to 3,401 _RS00020 CA265_RS00025: CA265_RS00025 - hypothetical protein, at 3,405 to 3,848 _RS00025 CA265_RS00030: CA265_RS00030 - LemA family protein, at 3,931 to 4,512 _RS00030 Position (kb) 2 3 4Strain fitness (log2 ratio) -1 0 1 2 3at 1.630 kb on + strand, within CA265_RS00010at 1.631 kb on - strand, within CA265_RS00010at 1.640 kb on - strand, within CA265_RS00010at 1.652 kb on + strand, within CA265_RS00010at 1.666 kb on + strand, within CA265_RS00010at 1.668 kb on + strand, within CA265_RS00010at 1.668 kb on + strand, within CA265_RS00010at 1.668 kb on + strand, within CA265_RS00010at 1.686 kb on - strand, within CA265_RS00010at 1.700 kb on + strand, within CA265_RS00010at 1.701 kb on - strand, within CA265_RS00010at 1.723 kb on + strand, within CA265_RS00010at 1.741 kb on - strand, within CA265_RS00010at 1.792 kb on + strand, within CA265_RS00010at 1.877 kb on + strand, within CA265_RS00010at 1.877 kb on + strand, within CA265_RS00010at 1.958 kb on + strand, within CA265_RS00010at 1.991 kb on + strand, within CA265_RS00010at 1.998 kb on + strand, within CA265_RS00010at 1.998 kb on + strand, within CA265_RS00010at 1.999 kb on - strand, within CA265_RS00010at 2.018 kb on - strand, within CA265_RS00010at 2.032 kb on + strand, within CA265_RS00010at 2.081 kb on - strandat 2.119 kb on + strandat 2.147 kb on - strandat 2.163 kb on + strandat 2.164 kb on - strandat 2.164 kb on - strandat 2.205 kb on - strand, within CA265_RS00015at 2.229 kb on + strand, within CA265_RS00015at 2.233 kb on + strand, within CA265_RS00015at 2.233 kb on + strand, within CA265_RS00015at 2.234 kb on - strand, within CA265_RS00015at 2.282 kb on + strand, within CA265_RS00015at 2.282 kb on + strand, within CA265_RS00015at 2.296 kb on - strand, within CA265_RS00015at 2.299 kb on - strand, within CA265_RS00015at 2.458 kb on + strand, within CA265_RS00015at 2.482 kb on + strand, within CA265_RS00015at 2.482 kb on + strand, within CA265_RS00015at 2.538 kb on + strandat 2.539 kb on - strandat 2.594 kb on - strandat 2.601 kb on - strandat 2.605 kb on + strandat 2.605 kb on + strandat 2.803 kb on - strand, within CA265_RS00020at 2.829 kb on - strand, within CA265_RS00020at 2.834 kb on + strand, within CA265_RS00020at 2.864 kb on + strand, within CA265_RS00020at 2.865 kb on - strand, within CA265_RS00020at 2.876 kb on + strand, within CA265_RS00020at 3.008 kb on + strand, within CA265_RS00020at 3.009 kb on - strand, within CA265_RS00020at 3.041 kb on + strand, within CA265_RS00020at 3.042 kb on - strand, within CA265_RS00020at 3.117 kb on - strand, within CA265_RS00020at 3.175 kb on + strand, within CA265_RS00020at 3.185 kb on + strand, within CA265_RS00020at 3.185 kb on + strand, within CA265_RS00020at 3.260 kb on + strand, within CA265_RS00020at 3.260 kb on + strand, within CA265_RS00020at 3.291 kb on + strand, within CA265_RS00020at 3.294 kb on + strand, within CA265_RS00020at 3.294 kb on + strand, within CA265_RS00020at 3.299 kb on + strand, within CA265_RS00020at 3.364 kb on - strandat 3.406 kb on + strandat 3.407 kb on - strandat 3.417 kb on + strandat 3.418 kb on - strandat 3.418 kb on - strandat 3.572 kb on + strand, within CA265_RS00025at 3.572 kb on + strand, within CA265_RS00025at 3.597 kb on + strand, within CA265_RS00025at 3.758 kb on + strand, within CA265_RS00025at 3.759 kb on - strand, within CA265_RS00025at 3.767 kb on + strand, within CA265_RS00025at 3.848 kb on + strandat 3.848 kb on + strandat 3.848 kb on + strandat 3.849 kb on - strandat 3.854 kb on + strandat 3.854 kb on + strandat 3.857 kb on + strandat 3.858 kb on - strandat 3.858 kb on - strandat 3.861 kb on + strandat 3.880 kb on + strandat 3.881 kb on - strandat 3.891 kb on + strandat 3.892 kb on - strandat 3.912 kb on - strandat 3.913 kb on + strandat 3.914 kb on - strandat 3.914 kb on - strandat 3.914 kb on - strandat 3.914 kb on - strandat 3.987 kb on + strandat 3.988 kb on - strandat 4.111 kb on + strand, within CA265_RS00030at 4.150 kb on + strand, within CA265_RS00030at 4.180 kb on + strand, within CA265_RS00030at 4.306 kb on + strand, within CA265_RS00030at 4.340 kb on - strand, within CA265_RS00030

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with nitrate 200 mM
remove
1,630 + CA265_RS00010 0.12 -0.3
1,631 - CA265_RS00010 0.12 +1.5
1,640 - CA265_RS00010 0.14 +0.6
1,652 + CA265_RS00010 0.16 +0.1
1,666 + CA265_RS00010 0.18 +1.1
1,668 + CA265_RS00010 0.19 +0.0
1,668 + CA265_RS00010 0.19 +0.9
1,668 + CA265_RS00010 0.19 +0.2
1,686 - CA265_RS00010 0.22 -0.7
1,700 + CA265_RS00010 0.25 -0.1
1,701 - CA265_RS00010 0.25 +0.3
1,723 + CA265_RS00010 0.29 +1.2
1,741 - CA265_RS00010 0.32 +1.3
1,792 + CA265_RS00010 0.41 +0.4
1,877 + CA265_RS00010 0.57 +1.5
1,877 + CA265_RS00010 0.57 +3.0
1,958 + CA265_RS00010 0.72 -0.1
1,991 + CA265_RS00010 0.78 -0.0
1,998 + CA265_RS00010 0.79 +1.1
1,998 + CA265_RS00010 0.79 -0.9
1,999 - CA265_RS00010 0.79 +1.5
2,018 - CA265_RS00010 0.83 -1.0
2,032 + CA265_RS00010 0.85 +0.5
2,081 - +2.3
2,119 + +0.7
2,147 - +1.2
2,163 + -1.0
2,164 - +0.6
2,164 - +0.7
2,205 - CA265_RS00015 0.13 -0.6
2,229 + CA265_RS00015 0.19 +0.8
2,233 + CA265_RS00015 0.21 +0.4
2,233 + CA265_RS00015 0.21 +0.4
2,234 - CA265_RS00015 0.21 +0.1
2,282 + CA265_RS00015 0.33 +0.4
2,282 + CA265_RS00015 0.33 +1.6
2,296 - CA265_RS00015 0.37 +0.4
2,299 - CA265_RS00015 0.37 +0.2
2,458 + CA265_RS00015 0.78 +1.1
2,482 + CA265_RS00015 0.84 -0.7
2,482 + CA265_RS00015 0.84 +1.0
2,538 + +0.2
2,539 - +0.4
2,594 - +0.7
2,601 - +0.3
2,605 + +0.9
2,605 + +0.3
2,803 - CA265_RS00020 0.23 +0.2
2,829 - CA265_RS00020 0.26 +0.8
2,834 + CA265_RS00020 0.27 +0.6
2,864 + CA265_RS00020 0.30 +0.4
2,865 - CA265_RS00020 0.31 +0.7
2,876 + CA265_RS00020 0.32 +0.6
3,008 + CA265_RS00020 0.49 +0.9
3,009 - CA265_RS00020 0.49 +1.6
3,041 + CA265_RS00020 0.53 +0.2
3,042 - CA265_RS00020 0.53 +0.1
3,117 - CA265_RS00020 0.63 +0.7
3,175 + CA265_RS00020 0.71 -0.9
3,185 + CA265_RS00020 0.72 +0.7
3,185 + CA265_RS00020 0.72 +0.2
3,260 + CA265_RS00020 0.82 +1.1
3,260 + CA265_RS00020 0.82 +1.5
3,291 + CA265_RS00020 0.86 +0.6
3,294 + CA265_RS00020 0.86 +0.3
3,294 + CA265_RS00020 0.86 +0.0
3,299 + CA265_RS00020 0.87 +0.5
3,364 - +0.8
3,406 + -0.9
3,407 - +0.2
3,417 + +0.6
3,418 - -0.0
3,418 - +1.2
3,572 + CA265_RS00025 0.38 +0.9
3,572 + CA265_RS00025 0.38 +2.6
3,597 + CA265_RS00025 0.43 -0.3
3,758 + CA265_RS00025 0.80 +0.9
3,759 - CA265_RS00025 0.80 +0.5
3,767 + CA265_RS00025 0.82 -0.4
3,848 + +0.3
3,848 + +1.5
3,848 + -1.1
3,849 - -1.4
3,854 + +0.6
3,854 + +1.1
3,857 + +0.6
3,858 - -0.3
3,858 - +0.7
3,861 + +0.6
3,880 + +1.8
3,881 - +0.3
3,891 + +0.9
3,892 - +0.9
3,912 - -0.9
3,913 + +0.4
3,914 - +0.7
3,914 - +0.9
3,914 - +0.4
3,914 - +0.0
3,987 + +0.9
3,988 - -1.6
4,111 + CA265_RS00030 0.31 +0.7
4,150 + CA265_RS00030 0.38 +0.9
4,180 + CA265_RS00030 0.43 +3.7
4,306 + CA265_RS00030 0.64 +0.3
4,340 - CA265_RS00030 0.70 +0.2

Or see this region's nucleotide sequence