Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3638

Experiment: Chlorate 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3636 and Ac3H11_3637 overlap by 4 nucleotidesAc3H11_3637 and Ac3H11_3638 are separated by 163 nucleotidesAc3H11_3638 and Ac3H11_3639 are separated by 55 nucleotides Ac3H11_3636 - hypothetical protein, at 194,383 to 195,855 _3636 Ac3H11_3637 - C-1'-hydroxylase CruF, at 195,852 to 196,673 _3637 Ac3H11_3638 - Biotin synthesis protein BioH, at 196,837 to 197,658 _3638 Ac3H11_3639 - FIG00537048: hypothetical protein, at 197,714 to 198,541 _3639 Position (kb) 196 197 198Strain fitness (log2 ratio) -2 -1 0 1 2 3at 195.855 kb on + strandat 195.889 kb on + strandat 195.994 kb on + strand, within Ac3H11_3637at 195.994 kb on + strand, within Ac3H11_3637at 195.994 kb on + strand, within Ac3H11_3637at 195.994 kb on + strand, within Ac3H11_3637at 195.995 kb on - strand, within Ac3H11_3637at 195.995 kb on - strand, within Ac3H11_3637at 195.995 kb on - strand, within Ac3H11_3637at 196.183 kb on + strand, within Ac3H11_3637at 196.183 kb on + strand, within Ac3H11_3637at 196.183 kb on + strand, within Ac3H11_3637at 196.184 kb on - strand, within Ac3H11_3637at 196.192 kb on + strand, within Ac3H11_3637at 196.192 kb on + strand, within Ac3H11_3637at 196.192 kb on + strand, within Ac3H11_3637at 196.192 kb on + strand, within Ac3H11_3637at 196.193 kb on - strand, within Ac3H11_3637at 196.193 kb on - strand, within Ac3H11_3637at 196.318 kb on + strand, within Ac3H11_3637at 196.318 kb on + strand, within Ac3H11_3637at 196.319 kb on - strand, within Ac3H11_3637at 196.327 kb on + strand, within Ac3H11_3637at 196.327 kb on + strand, within Ac3H11_3637at 196.327 kb on + strand, within Ac3H11_3637at 196.327 kb on + strand, within Ac3H11_3637at 196.328 kb on - strand, within Ac3H11_3637at 196.328 kb on - strand, within Ac3H11_3637at 196.328 kb on - strand, within Ac3H11_3637at 196.328 kb on - strand, within Ac3H11_3637at 196.328 kb on - strand, within Ac3H11_3637at 196.399 kb on + strand, within Ac3H11_3637at 196.399 kb on + strand, within Ac3H11_3637at 196.400 kb on - strand, within Ac3H11_3637at 196.400 kb on - strand, within Ac3H11_3637at 196.400 kb on - strand, within Ac3H11_3637at 196.400 kb on - strand, within Ac3H11_3637at 196.400 kb on - strand, within Ac3H11_3637at 196.405 kb on + strand, within Ac3H11_3637at 196.405 kb on + strand, within Ac3H11_3637at 196.405 kb on + strand, within Ac3H11_3637at 196.405 kb on + strand, within Ac3H11_3637at 196.405 kb on + strand, within Ac3H11_3637at 196.406 kb on - strand, within Ac3H11_3637at 196.406 kb on - strand, within Ac3H11_3637at 196.406 kb on - strand, within Ac3H11_3637at 196.406 kb on - strand, within Ac3H11_3637at 196.406 kb on - strand, within Ac3H11_3637at 196.610 kb on - strandat 196.610 kb on - strandat 196.610 kb on - strandat 196.627 kb on + strandat 196.627 kb on + strandat 196.628 kb on - strandat 196.628 kb on - strandat 196.628 kb on - strandat 196.693 kb on - strandat 196.709 kb on + strandat 196.710 kb on - strandat 196.710 kb on - strandat 196.710 kb on - strandat 196.805 kb on - strandat 196.805 kb on - strandat 196.806 kb on + strandat 196.806 kb on + strandat 196.806 kb on + strandat 196.806 kb on + strandat 196.806 kb on + strandat 196.807 kb on - strandat 196.807 kb on - strandat 196.807 kb on - strandat 196.807 kb on - strandat 196.807 kb on - strandat 196.807 kb on - strandat 197.090 kb on + strand, within Ac3H11_3638at 197.090 kb on + strand, within Ac3H11_3638at 197.090 kb on + strand, within Ac3H11_3638at 197.090 kb on + strand, within Ac3H11_3638at 197.090 kb on + strand, within Ac3H11_3638at 197.091 kb on - strand, within Ac3H11_3638at 197.091 kb on - strand, within Ac3H11_3638at 197.091 kb on - strand, within Ac3H11_3638at 197.091 kb on - strand, within Ac3H11_3638at 197.091 kb on - strand, within Ac3H11_3638at 197.165 kb on + strand, within Ac3H11_3638at 197.165 kb on + strand, within Ac3H11_3638at 197.165 kb on + strand, within Ac3H11_3638at 197.165 kb on + strand, within Ac3H11_3638at 197.165 kb on + strand, within Ac3H11_3638at 197.165 kb on + strand, within Ac3H11_3638at 197.166 kb on - strand, within Ac3H11_3638at 197.166 kb on - strand, within Ac3H11_3638at 197.166 kb on - strand, within Ac3H11_3638at 197.609 kb on + strandat 197.609 kb on + strandat 197.609 kb on + strandat 197.610 kb on - strandat 197.610 kb on - strandat 197.614 kb on - strandat 197.715 kb on + strandat 197.715 kb on + strandat 197.715 kb on + strandat 197.715 kb on + strandat 197.715 kb on + strandat 197.716 kb on - strandat 197.716 kb on - strandat 197.716 kb on - strandat 197.716 kb on - strandat 197.719 kb on + strandat 197.720 kb on - strandat 197.720 kb on - strandat 197.720 kb on - strandat 197.720 kb on - strandat 197.720 kb on - strandat 197.720 kb on - strandat 197.720 kb on - strandat 197.880 kb on + strand, within Ac3H11_3639at 197.880 kb on + strand, within Ac3H11_3639at 197.880 kb on + strand, within Ac3H11_3639at 197.906 kb on + strand, within Ac3H11_3639at 197.906 kb on + strand, within Ac3H11_3639at 197.906 kb on + strand, within Ac3H11_3639at 197.906 kb on + strand, within Ac3H11_3639at 197.906 kb on + strand, within Ac3H11_3639at 197.907 kb on - strand, within Ac3H11_3639at 197.907 kb on - strand, within Ac3H11_3639at 197.907 kb on - strand, within Ac3H11_3639at 197.907 kb on - strand, within Ac3H11_3639at 197.938 kb on - strand, within Ac3H11_3639at 197.938 kb on - strand, within Ac3H11_3639at 198.072 kb on + strand, within Ac3H11_3639at 198.096 kb on + strand, within Ac3H11_3639at 198.097 kb on - strand, within Ac3H11_3639at 198.097 kb on - strand, within Ac3H11_3639at 198.138 kb on + strand, within Ac3H11_3639at 198.138 kb on + strand, within Ac3H11_3639at 198.139 kb on - strand, within Ac3H11_3639at 198.534 kb on + strandat 198.534 kb on + strandat 198.534 kb on + strandat 198.534 kb on + strandat 198.534 kb on + strandat 198.534 kb on + strandat 198.534 kb on + strandat 198.534 kb on + strandat 198.534 kb on + strandat 198.534 kb on + strandat 198.535 kb on - strandat 198.581 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorate 20 mM
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195,855 + +0.5
195,889 + -0.9
195,994 + Ac3H11_3637 0.17 -0.1
195,994 + Ac3H11_3637 0.17 +0.3
195,994 + Ac3H11_3637 0.17 -0.7
195,994 + Ac3H11_3637 0.17 -0.1
195,995 - Ac3H11_3637 0.17 -0.2
195,995 - Ac3H11_3637 0.17 -0.5
195,995 - Ac3H11_3637 0.17 +0.3
196,183 + Ac3H11_3637 0.40 -0.7
196,183 + Ac3H11_3637 0.40 +0.0
196,183 + Ac3H11_3637 0.40 -0.1
196,184 - Ac3H11_3637 0.40 -0.2
196,192 + Ac3H11_3637 0.41 -0.1
196,192 + Ac3H11_3637 0.41 -0.3
196,192 + Ac3H11_3637 0.41 +0.7
196,192 + Ac3H11_3637 0.41 -0.4
196,193 - Ac3H11_3637 0.41 +1.1
196,193 - Ac3H11_3637 0.41 -0.1
196,318 + Ac3H11_3637 0.57 -0.5
196,318 + Ac3H11_3637 0.57 -0.1
196,319 - Ac3H11_3637 0.57 -0.8
196,327 + Ac3H11_3637 0.58 +1.2
196,327 + Ac3H11_3637 0.58 -1.7
196,327 + Ac3H11_3637 0.58 -0.9
196,327 + Ac3H11_3637 0.58 +0.7
196,328 - Ac3H11_3637 0.58 -0.9
196,328 - Ac3H11_3637 0.58 +0.3
196,328 - Ac3H11_3637 0.58 -1.1
196,328 - Ac3H11_3637 0.58 +0.3
196,328 - Ac3H11_3637 0.58 -0.3
196,399 + Ac3H11_3637 0.67 -0.2
196,399 + Ac3H11_3637 0.67 -0.2
196,400 - Ac3H11_3637 0.67 +0.4
196,400 - Ac3H11_3637 0.67 +0.7
196,400 - Ac3H11_3637 0.67 -0.4
196,400 - Ac3H11_3637 0.67 +1.4
196,400 - Ac3H11_3637 0.67 -0.0
196,405 + Ac3H11_3637 0.67 -0.2
196,405 + Ac3H11_3637 0.67 +0.7
196,405 + Ac3H11_3637 0.67 -0.5
196,405 + Ac3H11_3637 0.67 -0.5
196,405 + Ac3H11_3637 0.67 +0.5
196,406 - Ac3H11_3637 0.67 +0.4
196,406 - Ac3H11_3637 0.67 +1.4
196,406 - Ac3H11_3637 0.67 -0.6
196,406 - Ac3H11_3637 0.67 -0.1
196,406 - Ac3H11_3637 0.67 +0.4
196,610 - -0.5
196,610 - -0.4
196,610 - -0.1
196,627 + -0.2
196,627 + -0.2
196,628 - -0.5
196,628 - +0.4
196,628 - -0.5
196,693 - -0.9
196,709 + -0.9
196,710 - -0.5
196,710 - -0.6
196,710 - -1.5
196,805 - +1.1
196,805 - -0.7
196,806 + -0.6
196,806 + +0.1
196,806 + -0.6
196,806 + +0.4
196,806 + +0.5
196,807 - -0.7
196,807 - +0.2
196,807 - -1.0
196,807 - -0.0
196,807 - +0.7
196,807 - +0.0
197,090 + Ac3H11_3638 0.31 -0.3
197,090 + Ac3H11_3638 0.31 +0.3
197,090 + Ac3H11_3638 0.31 -0.3
197,090 + Ac3H11_3638 0.31 -0.5
197,090 + Ac3H11_3638 0.31 -0.2
197,091 - Ac3H11_3638 0.31 +0.4
197,091 - Ac3H11_3638 0.31 -0.5
197,091 - Ac3H11_3638 0.31 +0.4
197,091 - Ac3H11_3638 0.31 -0.4
197,091 - Ac3H11_3638 0.31 -0.0
197,165 + Ac3H11_3638 0.40 -0.7
197,165 + Ac3H11_3638 0.40 -2.2
197,165 + Ac3H11_3638 0.40 +1.1
197,165 + Ac3H11_3638 0.40 -1.0
197,165 + Ac3H11_3638 0.40 +0.3
197,165 + Ac3H11_3638 0.40 +1.0
197,166 - Ac3H11_3638 0.40 +0.0
197,166 - Ac3H11_3638 0.40 +0.0
197,166 - Ac3H11_3638 0.40 +0.2
197,609 + -0.2
197,609 + -0.3
197,609 + +0.3
197,610 - +0.5
197,610 - +1.1
197,614 - -0.3
197,715 + -0.4
197,715 + +0.3
197,715 + +0.5
197,715 + +1.2
197,715 + +0.0
197,716 - -0.5
197,716 - -0.1
197,716 - -0.0
197,716 - -0.1
197,719 + +0.4
197,720 - -0.6
197,720 - +0.1
197,720 - -0.3
197,720 - -0.8
197,720 - +0.4
197,720 - -1.6
197,720 - -0.6
197,880 + Ac3H11_3639 0.20 -0.1
197,880 + Ac3H11_3639 0.20 +1.2
197,880 + Ac3H11_3639 0.20 -0.7
197,906 + Ac3H11_3639 0.23 -0.1
197,906 + Ac3H11_3639 0.23 +0.0
197,906 + Ac3H11_3639 0.23 +2.8
197,906 + Ac3H11_3639 0.23 +2.1
197,906 + Ac3H11_3639 0.23 +0.4
197,907 - Ac3H11_3639 0.23 +0.3
197,907 - Ac3H11_3639 0.23 +0.2
197,907 - Ac3H11_3639 0.23 +1.5
197,907 - Ac3H11_3639 0.23 -0.5
197,938 - Ac3H11_3639 0.27 -0.1
197,938 - Ac3H11_3639 0.27 +0.2
198,072 + Ac3H11_3639 0.43 -0.4
198,096 + Ac3H11_3639 0.46 +0.1
198,097 - Ac3H11_3639 0.46 -0.2
198,097 - Ac3H11_3639 0.46 +0.8
198,138 + Ac3H11_3639 0.51 +0.4
198,138 + Ac3H11_3639 0.51 -1.9
198,139 - Ac3H11_3639 0.51 +0.5
198,534 + +0.1
198,534 + +0.2
198,534 + +0.7
198,534 + -0.7
198,534 + -0.8
198,534 + +0.9
198,534 + -0.5
198,534 + -0.9
198,534 + +0.6
198,534 + +0.8
198,535 - +0.9
198,581 + +0.3

Or see this region's nucleotide sequence