Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1923

Experiment: Chlorate 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1921 and Ac3H11_1922 are separated by 28 nucleotidesAc3H11_1922 and Ac3H11_1923 overlap by 4 nucleotidesAc3H11_1923 and Ac3H11_1924 are separated by 23 nucleotides Ac3H11_1921 - Acyclic terpenes utilization regulator AtuR, TetR family, at 130,850 to 131,575 _1921 Ac3H11_1922 - Citronellol and citronellal dehydrogenase, at 131,604 to 132,533 _1922 Ac3H11_1923 - Geranyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.5), at 132,530 to 134,143 _1923 Ac3H11_1924 - putative DNA alkylation repair enzyme, at 134,167 to 135,297 _1924 Position (kb) 132 133 134 135Strain fitness (log2 ratio) -2 -1 0 1at 131.629 kb on - strandat 131.699 kb on - strand, within Ac3H11_1922at 131.699 kb on - strand, within Ac3H11_1922at 131.699 kb on - strand, within Ac3H11_1922at 132.021 kb on + strand, within Ac3H11_1922at 132.021 kb on + strand, within Ac3H11_1922at 132.022 kb on - strand, within Ac3H11_1922at 132.201 kb on + strand, within Ac3H11_1922at 132.202 kb on - strand, within Ac3H11_1922at 132.228 kb on + strand, within Ac3H11_1922at 132.228 kb on + strand, within Ac3H11_1922at 132.229 kb on - strand, within Ac3H11_1922at 133.115 kb on + strand, within Ac3H11_1923at 133.115 kb on + strand, within Ac3H11_1923at 133.115 kb on + strand, within Ac3H11_1923at 133.115 kb on + strand, within Ac3H11_1923at 133.115 kb on + strand, within Ac3H11_1923at 133.115 kb on + strand, within Ac3H11_1923at 133.115 kb on + strand, within Ac3H11_1923at 133.115 kb on + strand, within Ac3H11_1923at 133.115 kb on + strand, within Ac3H11_1923at 133.115 kb on + strand, within Ac3H11_1923at 133.115 kb on + strand, within Ac3H11_1923at 133.115 kb on + strand, within Ac3H11_1923at 133.115 kb on + strand, within Ac3H11_1923at 133.115 kb on + strand, within Ac3H11_1923at 133.115 kb on + strand, within Ac3H11_1923at 133.115 kb on + strand, within Ac3H11_1923at 133.115 kb on + strand, within Ac3H11_1923at 133.115 kb on + strand, within Ac3H11_1923at 133.115 kb on + strand, within Ac3H11_1923at 133.115 kb on + strand, within Ac3H11_1923at 133.115 kb on + strand, within Ac3H11_1923at 133.116 kb on - strand, within Ac3H11_1923at 133.116 kb on - strand, within Ac3H11_1923at 133.116 kb on - strand, within Ac3H11_1923at 133.116 kb on - strand, within Ac3H11_1923at 133.116 kb on - strand, within Ac3H11_1923at 133.116 kb on - strand, within Ac3H11_1923at 133.116 kb on - strand, within Ac3H11_1923at 133.116 kb on - strand, within Ac3H11_1923at 133.116 kb on - strand, within Ac3H11_1923at 133.116 kb on - strand, within Ac3H11_1923at 133.116 kb on - strand, within Ac3H11_1923at 133.116 kb on - strand, within Ac3H11_1923at 133.116 kb on - strand, within Ac3H11_1923at 133.116 kb on - strand, within Ac3H11_1923at 133.116 kb on - strand, within Ac3H11_1923at 133.116 kb on - strand, within Ac3H11_1923at 133.116 kb on - strand, within Ac3H11_1923at 133.116 kb on - strand, within Ac3H11_1923at 133.274 kb on + strand, within Ac3H11_1923at 133.274 kb on + strand, within Ac3H11_1923at 133.274 kb on + strand, within Ac3H11_1923at 133.275 kb on - strand, within Ac3H11_1923at 133.368 kb on + strand, within Ac3H11_1923at 133.369 kb on - strand, within Ac3H11_1923at 133.640 kb on + strand, within Ac3H11_1923at 133.640 kb on + strand, within Ac3H11_1923at 133.640 kb on + strand, within Ac3H11_1923at 133.641 kb on - strand, within Ac3H11_1923at 133.641 kb on - strand, within Ac3H11_1923at 133.641 kb on - strand, within Ac3H11_1923at 133.641 kb on - strand, within Ac3H11_1923at 133.661 kb on + strand, within Ac3H11_1923at 133.661 kb on + strand, within Ac3H11_1923at 133.661 kb on + strand, within Ac3H11_1923at 133.661 kb on + strand, within Ac3H11_1923at 133.661 kb on + strand, within Ac3H11_1923at 133.661 kb on + strand, within Ac3H11_1923at 133.662 kb on - strand, within Ac3H11_1923at 133.662 kb on - strand, within Ac3H11_1923at 133.662 kb on - strand, within Ac3H11_1923at 133.662 kb on - strand, within Ac3H11_1923at 133.662 kb on - strand, within Ac3H11_1923at 133.790 kb on + strand, within Ac3H11_1923at 133.790 kb on + strand, within Ac3H11_1923at 133.791 kb on - strand, within Ac3H11_1923at 133.811 kb on + strand, within Ac3H11_1923at 134.003 kb on + strandat 134.004 kb on - strandat 134.004 kb on - strandat 134.141 kb on + strandat 134.141 kb on + strandat 134.142 kb on - strandat 134.142 kb on - strandat 134.142 kb on - strandat 134.142 kb on - strandat 134.276 kb on + strandat 134.276 kb on + strandat 134.276 kb on + strandat 134.277 kb on - strandat 134.277 kb on - strandat 134.277 kb on - strandat 134.277 kb on - strandat 134.288 kb on - strand, within Ac3H11_1924at 134.449 kb on + strand, within Ac3H11_1924at 134.450 kb on - strand, within Ac3H11_1924at 134.450 kb on - strand, within Ac3H11_1924at 134.464 kb on + strand, within Ac3H11_1924at 134.465 kb on - strand, within Ac3H11_1924at 134.482 kb on + strand, within Ac3H11_1924at 134.482 kb on + strand, within Ac3H11_1924at 134.482 kb on + strand, within Ac3H11_1924at 134.482 kb on + strand, within Ac3H11_1924at 134.482 kb on + strand, within Ac3H11_1924at 134.482 kb on + strand, within Ac3H11_1924at 134.482 kb on + strand, within Ac3H11_1924at 134.482 kb on + strand, within Ac3H11_1924at 134.483 kb on - strand, within Ac3H11_1924at 134.483 kb on - strand, within Ac3H11_1924at 134.483 kb on - strand, within Ac3H11_1924at 134.483 kb on - strand, within Ac3H11_1924at 134.483 kb on - strand, within Ac3H11_1924at 134.483 kb on - strand, within Ac3H11_1924at 134.483 kb on - strand, within Ac3H11_1924at 134.483 kb on - strand, within Ac3H11_1924at 134.483 kb on - strand, within Ac3H11_1924at 134.483 kb on - strand, within Ac3H11_1924at 134.483 kb on - strand, within Ac3H11_1924at 134.483 kb on - strand, within Ac3H11_1924at 134.578 kb on + strand, within Ac3H11_1924at 134.773 kb on + strand, within Ac3H11_1924at 134.773 kb on + strand, within Ac3H11_1924at 134.773 kb on + strand, within Ac3H11_1924at 134.774 kb on - strand, within Ac3H11_1924at 134.774 kb on - strand, within Ac3H11_1924at 134.774 kb on - strand, within Ac3H11_1924at 134.774 kb on - strand, within Ac3H11_1924at 134.837 kb on + strand, within Ac3H11_1924at 134.913 kb on + strand, within Ac3H11_1924at 134.914 kb on - strand, within Ac3H11_1924at 135.097 kb on + strand, within Ac3H11_1924at 135.097 kb on + strand, within Ac3H11_1924at 135.097 kb on + strand, within Ac3H11_1924at 135.097 kb on + strand, within Ac3H11_1924at 135.098 kb on - strand, within Ac3H11_1924at 135.098 kb on - strand, within Ac3H11_1924at 135.098 kb on - strand, within Ac3H11_1924at 135.098 kb on - strand, within Ac3H11_1924at 135.098 kb on - strand, within Ac3H11_1924

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorate 20 mM
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131,629 - +1.2
131,699 - Ac3H11_1922 0.10 +0.3
131,699 - Ac3H11_1922 0.10 -0.7
131,699 - Ac3H11_1922 0.10 +0.1
132,021 + Ac3H11_1922 0.45 +0.2
132,021 + Ac3H11_1922 0.45 +1.4
132,022 - Ac3H11_1922 0.45 +0.6
132,201 + Ac3H11_1922 0.64 +0.1
132,202 - Ac3H11_1922 0.64 +0.5
132,228 + Ac3H11_1922 0.67 -0.4
132,228 + Ac3H11_1922 0.67 +0.1
132,229 - Ac3H11_1922 0.67 +0.3
133,115 + Ac3H11_1923 0.36 +0.8
133,115 + Ac3H11_1923 0.36 +1.3
133,115 + Ac3H11_1923 0.36 -0.1
133,115 + Ac3H11_1923 0.36 -0.5
133,115 + Ac3H11_1923 0.36 +1.0
133,115 + Ac3H11_1923 0.36 -0.6
133,115 + Ac3H11_1923 0.36 -0.0
133,115 + Ac3H11_1923 0.36 -0.1
133,115 + Ac3H11_1923 0.36 -1.7
133,115 + Ac3H11_1923 0.36 +0.1
133,115 + Ac3H11_1923 0.36 -0.4
133,115 + Ac3H11_1923 0.36 +0.2
133,115 + Ac3H11_1923 0.36 +1.0
133,115 + Ac3H11_1923 0.36 -0.5
133,115 + Ac3H11_1923 0.36 -2.3
133,115 + Ac3H11_1923 0.36 +0.9
133,115 + Ac3H11_1923 0.36 -0.1
133,115 + Ac3H11_1923 0.36 -0.4
133,115 + Ac3H11_1923 0.36 +0.9
133,115 + Ac3H11_1923 0.36 -1.6
133,115 + Ac3H11_1923 0.36 -0.9
133,116 - Ac3H11_1923 0.36 +0.2
133,116 - Ac3H11_1923 0.36 -2.3
133,116 - Ac3H11_1923 0.36 +0.1
133,116 - Ac3H11_1923 0.36 -0.4
133,116 - Ac3H11_1923 0.36 -0.4
133,116 - Ac3H11_1923 0.36 -0.4
133,116 - Ac3H11_1923 0.36 -1.0
133,116 - Ac3H11_1923 0.36 +0.9
133,116 - Ac3H11_1923 0.36 -0.4
133,116 - Ac3H11_1923 0.36 -0.7
133,116 - Ac3H11_1923 0.36 -0.4
133,116 - Ac3H11_1923 0.36 +0.4
133,116 - Ac3H11_1923 0.36 +0.7
133,116 - Ac3H11_1923 0.36 +0.5
133,116 - Ac3H11_1923 0.36 -0.3
133,116 - Ac3H11_1923 0.36 -0.2
133,116 - Ac3H11_1923 0.36 -0.4
133,116 - Ac3H11_1923 0.36 -0.1
133,274 + Ac3H11_1923 0.46 +0.3
133,274 + Ac3H11_1923 0.46 +0.3
133,274 + Ac3H11_1923 0.46 -0.1
133,275 - Ac3H11_1923 0.46 +0.3
133,368 + Ac3H11_1923 0.52 -0.2
133,369 - Ac3H11_1923 0.52 -1.0
133,640 + Ac3H11_1923 0.69 -0.5
133,640 + Ac3H11_1923 0.69 +0.2
133,640 + Ac3H11_1923 0.69 -0.4
133,641 - Ac3H11_1923 0.69 -0.1
133,641 - Ac3H11_1923 0.69 +0.1
133,641 - Ac3H11_1923 0.69 -0.8
133,641 - Ac3H11_1923 0.69 +0.1
133,661 + Ac3H11_1923 0.70 -0.4
133,661 + Ac3H11_1923 0.70 +0.3
133,661 + Ac3H11_1923 0.70 +0.1
133,661 + Ac3H11_1923 0.70 -0.3
133,661 + Ac3H11_1923 0.70 -0.6
133,661 + Ac3H11_1923 0.70 +0.7
133,662 - Ac3H11_1923 0.70 -0.0
133,662 - Ac3H11_1923 0.70 +0.3
133,662 - Ac3H11_1923 0.70 +0.1
133,662 - Ac3H11_1923 0.70 +0.2
133,662 - Ac3H11_1923 0.70 -1.1
133,790 + Ac3H11_1923 0.78 -1.2
133,790 + Ac3H11_1923 0.78 -2.3
133,791 - Ac3H11_1923 0.78 -2.4
133,811 + Ac3H11_1923 0.79 +0.2
134,003 + +0.1
134,004 - -0.2
134,004 - +0.0
134,141 + -0.0
134,141 + +0.2
134,142 - -0.5
134,142 - +0.2
134,142 - +0.2
134,142 - +0.1
134,276 + -1.0
134,276 + -0.7
134,276 + -0.2
134,277 - -0.3
134,277 - -0.1
134,277 - +0.5
134,277 - +0.6
134,288 - Ac3H11_1924 0.11 +0.8
134,449 + Ac3H11_1924 0.25 +0.4
134,450 - Ac3H11_1924 0.25 +0.1
134,450 - Ac3H11_1924 0.25 +0.0
134,464 + Ac3H11_1924 0.26 -0.9
134,465 - Ac3H11_1924 0.26 +1.1
134,482 + Ac3H11_1924 0.28 +0.7
134,482 + Ac3H11_1924 0.28 +1.0
134,482 + Ac3H11_1924 0.28 +0.8
134,482 + Ac3H11_1924 0.28 -0.4
134,482 + Ac3H11_1924 0.28 -1.0
134,482 + Ac3H11_1924 0.28 +0.8
134,482 + Ac3H11_1924 0.28 +0.3
134,482 + Ac3H11_1924 0.28 +0.2
134,483 - Ac3H11_1924 0.28 -0.7
134,483 - Ac3H11_1924 0.28 -0.5
134,483 - Ac3H11_1924 0.28 +0.1
134,483 - Ac3H11_1924 0.28 -0.7
134,483 - Ac3H11_1924 0.28 +0.8
134,483 - Ac3H11_1924 0.28 -1.1
134,483 - Ac3H11_1924 0.28 -0.5
134,483 - Ac3H11_1924 0.28 -0.1
134,483 - Ac3H11_1924 0.28 -0.6
134,483 - Ac3H11_1924 0.28 -0.4
134,483 - Ac3H11_1924 0.28 +0.6
134,483 - Ac3H11_1924 0.28 +0.3
134,578 + Ac3H11_1924 0.36 -0.1
134,773 + Ac3H11_1924 0.54 +0.5
134,773 + Ac3H11_1924 0.54 -0.1
134,773 + Ac3H11_1924 0.54 +0.1
134,774 - Ac3H11_1924 0.54 +0.6
134,774 - Ac3H11_1924 0.54 +1.3
134,774 - Ac3H11_1924 0.54 -0.7
134,774 - Ac3H11_1924 0.54 -0.7
134,837 + Ac3H11_1924 0.59 +0.8
134,913 + Ac3H11_1924 0.66 +0.7
134,914 - Ac3H11_1924 0.66 -1.0
135,097 + Ac3H11_1924 0.82 +0.2
135,097 + Ac3H11_1924 0.82 +0.0
135,097 + Ac3H11_1924 0.82 +0.4
135,097 + Ac3H11_1924 0.82 -1.1
135,098 - Ac3H11_1924 0.82 -0.0
135,098 - Ac3H11_1924 0.82 -0.7
135,098 - Ac3H11_1924 0.82 -0.6
135,098 - Ac3H11_1924 0.82 -0.6
135,098 - Ac3H11_1924 0.82 +0.6

Or see this region's nucleotide sequence