Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1638

Experiment: Chlorate 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1637 and Ac3H11_1638 are separated by 143 nucleotidesAc3H11_1638 and Ac3H11_1639 are separated by 287 nucleotides Ac3H11_1637 - Zinc transporter, ZIP family, at 227,585 to 228,433 _1637 Ac3H11_1638 - Dienelactone hydrolase family, at 228,577 to 229,473 _1638 Ac3H11_1639 - Probable two-component response regulator, at 229,761 to 232,151 _1639 Position (kb) 228 229 230Strain fitness (log2 ratio) -3 -2 -1 0 1at 227.718 kb on + strand, within Ac3H11_1637at 227.719 kb on - strand, within Ac3H11_1637at 227.719 kb on - strand, within Ac3H11_1637at 227.752 kb on - strand, within Ac3H11_1637at 227.752 kb on - strand, within Ac3H11_1637at 227.788 kb on - strand, within Ac3H11_1637at 228.450 kb on + strandat 228.503 kb on + strandat 228.647 kb on + strandat 228.659 kb on + strandat 228.753 kb on + strand, within Ac3H11_1638at 228.753 kb on + strand, within Ac3H11_1638at 228.753 kb on + strand, within Ac3H11_1638at 228.754 kb on - strand, within Ac3H11_1638at 228.754 kb on - strand, within Ac3H11_1638at 228.754 kb on - strand, within Ac3H11_1638at 228.754 kb on - strand, within Ac3H11_1638at 228.754 kb on - strand, within Ac3H11_1638at 228.754 kb on - strand, within Ac3H11_1638at 228.754 kb on - strand, within Ac3H11_1638at 228.794 kb on + strand, within Ac3H11_1638at 228.795 kb on - strand, within Ac3H11_1638at 228.795 kb on - strand, within Ac3H11_1638at 228.795 kb on - strand, within Ac3H11_1638at 228.795 kb on - strand, within Ac3H11_1638at 228.795 kb on - strand, within Ac3H11_1638at 228.884 kb on + strand, within Ac3H11_1638at 228.884 kb on + strand, within Ac3H11_1638at 228.884 kb on + strand, within Ac3H11_1638at 228.885 kb on - strand, within Ac3H11_1638at 228.923 kb on + strand, within Ac3H11_1638at 228.924 kb on - strand, within Ac3H11_1638at 228.924 kb on - strand, within Ac3H11_1638at 228.924 kb on - strand, within Ac3H11_1638at 229.088 kb on + strand, within Ac3H11_1638at 229.088 kb on + strand, within Ac3H11_1638at 229.115 kb on + strand, within Ac3H11_1638at 229.115 kb on + strand, within Ac3H11_1638at 229.178 kb on + strand, within Ac3H11_1638at 229.178 kb on + strand, within Ac3H11_1638at 229.178 kb on + strand, within Ac3H11_1638at 229.179 kb on - strandat 229.179 kb on - strand, within Ac3H11_1638at 229.364 kb on + strand, within Ac3H11_1638at 229.364 kb on + strand, within Ac3H11_1638at 229.523 kb on - strandat 230.070 kb on + strand, within Ac3H11_1639at 230.070 kb on + strand, within Ac3H11_1639at 230.070 kb on + strand, within Ac3H11_1639at 230.070 kb on + strand, within Ac3H11_1639at 230.070 kb on + strand, within Ac3H11_1639at 230.071 kb on - strand, within Ac3H11_1639at 230.071 kb on - strand, within Ac3H11_1639at 230.110 kb on - strand, within Ac3H11_1639

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorate 20 mM
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227,718 + Ac3H11_1637 0.16 -0.8
227,719 - Ac3H11_1637 0.16 -2.9
227,719 - Ac3H11_1637 0.16 -0.6
227,752 - Ac3H11_1637 0.20 -1.3
227,752 - Ac3H11_1637 0.20 -0.3
227,788 - Ac3H11_1637 0.24 -1.2
228,450 + -1.0
228,503 + -2.8
228,647 + +0.2
228,659 + -0.8
228,753 + Ac3H11_1638 0.20 +1.2
228,753 + Ac3H11_1638 0.20 -0.5
228,753 + Ac3H11_1638 0.20 -1.1
228,754 - Ac3H11_1638 0.20 -0.0
228,754 - Ac3H11_1638 0.20 +0.1
228,754 - Ac3H11_1638 0.20 -1.5
228,754 - Ac3H11_1638 0.20 -0.6
228,754 - Ac3H11_1638 0.20 -0.0
228,754 - Ac3H11_1638 0.20 +0.5
228,754 - Ac3H11_1638 0.20 -0.2
228,794 + Ac3H11_1638 0.24 -1.1
228,795 - Ac3H11_1638 0.24 -0.9
228,795 - Ac3H11_1638 0.24 -0.4
228,795 - Ac3H11_1638 0.24 +0.0
228,795 - Ac3H11_1638 0.24 +0.1
228,795 - Ac3H11_1638 0.24 -0.7
228,884 + Ac3H11_1638 0.34 +0.1
228,884 + Ac3H11_1638 0.34 -0.8
228,884 + Ac3H11_1638 0.34 -0.5
228,885 - Ac3H11_1638 0.34 -0.0
228,923 + Ac3H11_1638 0.39 -0.0
228,924 - Ac3H11_1638 0.39 +0.3
228,924 - Ac3H11_1638 0.39 +0.5
228,924 - Ac3H11_1638 0.39 +0.1
229,088 + Ac3H11_1638 0.57 -0.4
229,088 + Ac3H11_1638 0.57 +0.6
229,115 + Ac3H11_1638 0.60 +0.8
229,115 + Ac3H11_1638 0.60 +0.0
229,178 + Ac3H11_1638 0.67 +0.0
229,178 + Ac3H11_1638 0.67 -1.0
229,178 + Ac3H11_1638 0.67 -0.8
229,179 - +0.6
229,179 - Ac3H11_1638 0.67 -1.0
229,364 + Ac3H11_1638 0.88 +0.4
229,364 + Ac3H11_1638 0.88 -1.0
229,523 - -0.5
230,070 + Ac3H11_1639 0.13 +0.8
230,070 + Ac3H11_1639 0.13 +0.8
230,070 + Ac3H11_1639 0.13 -0.1
230,070 + Ac3H11_1639 0.13 +0.6
230,070 + Ac3H11_1639 0.13 +0.1
230,071 - Ac3H11_1639 0.13 -1.5
230,071 - Ac3H11_1639 0.13 +0.2
230,110 - Ac3H11_1639 0.15 -1.7

Or see this region's nucleotide sequence