Experiment: benzoic 0.29 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS31075 and AZOBR_RS31080 are separated by 133 nucleotides AZOBR_RS31080 and AZOBR_RS31085 are separated by 57 nucleotides AZOBR_RS31085 and AZOBR_RS31090 are separated by 196 nucleotides AZOBR_RS31090 and AZOBR_RS31095 are separated by 3 nucleotides
AZOBR_RS31075: AZOBR_RS31075 - UTP--glucose-1-phosphate uridylyltransferase, at 337,229 to 338,098
_RS31075
AZOBR_RS31080: AZOBR_RS31080 - hypothetical protein, at 338,232 to 338,948
_RS31080
AZOBR_RS31085: AZOBR_RS31085 - hypothetical protein, at 339,006 to 339,752
_RS31085
AZOBR_RS31090: AZOBR_RS31090 - pseudouridine synthase, at 339,949 to 340,659
_RS31090
AZOBR_RS31095: AZOBR_RS31095 - hypothetical protein, at 340,663 to 341,670
_RS31095
Position (kb) 339
340 Strain fitness (log2 ratio) -1
0
1 at 338.281 kb on + strand at 338.282 kb on - strand at 338.282 kb on - strand at 338.340 kb on + strand, within AZOBR_RS31080 at 338.341 kb on - strand, within AZOBR_RS31080 at 338.378 kb on + strand, within AZOBR_RS31080 at 338.383 kb on + strand, within AZOBR_RS31080 at 338.383 kb on + strand, within AZOBR_RS31080 at 338.384 kb on - strand, within AZOBR_RS31080 at 338.403 kb on - strand, within AZOBR_RS31080 at 338.403 kb on - strand, within AZOBR_RS31080 at 338.674 kb on + strand, within AZOBR_RS31080 at 338.674 kb on + strand, within AZOBR_RS31080 at 338.675 kb on - strand, within AZOBR_RS31080 at 338.991 kb on + strand at 338.992 kb on - strand at 339.007 kb on + strand at 339.008 kb on - strand at 339.008 kb on - strand at 339.097 kb on + strand, within AZOBR_RS31085 at 339.097 kb on + strand, within AZOBR_RS31085 at 339.098 kb on - strand, within AZOBR_RS31085 at 339.098 kb on - strand, within AZOBR_RS31085 at 339.098 kb on - strand, within AZOBR_RS31085 at 339.194 kb on - strand, within AZOBR_RS31085 at 339.515 kb on - strand, within AZOBR_RS31085 at 339.517 kb on + strand, within AZOBR_RS31085 at 340.243 kb on + strand, within AZOBR_RS31090 at 340.244 kb on - strand at 340.372 kb on + strand, within AZOBR_RS31090 at 340.372 kb on + strand, within AZOBR_RS31090 at 340.373 kb on - strand, within AZOBR_RS31090 at 340.492 kb on + strand, within AZOBR_RS31090 at 340.492 kb on + strand, within AZOBR_RS31090 at 340.493 kb on - strand, within AZOBR_RS31090 at 340.495 kb on + strand, within AZOBR_RS31090 at 340.495 kb on + strand, within AZOBR_RS31090 at 340.657 kb on + strand at 340.657 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction benzoic 0.29 mg/ml remove 338,281 + -0.1 338,282 - +0.4 338,282 - +0.1 338,340 + AZOBR_RS31080 0.15 -1.3 338,341 - AZOBR_RS31080 0.15 -0.3 338,378 + AZOBR_RS31080 0.20 -1.7 338,383 + AZOBR_RS31080 0.21 +0.7 338,383 + AZOBR_RS31080 0.21 -0.1 338,384 - AZOBR_RS31080 0.21 -0.3 338,403 - AZOBR_RS31080 0.24 +0.1 338,403 - AZOBR_RS31080 0.24 +0.4 338,674 + AZOBR_RS31080 0.62 -1.0 338,674 + AZOBR_RS31080 0.62 +0.6 338,675 - AZOBR_RS31080 0.62 -0.4 338,991 + +0.2 338,992 - +0.1 339,007 + +0.3 339,008 - +0.8 339,008 - -0.1 339,097 + AZOBR_RS31085 0.12 +0.9 339,097 + AZOBR_RS31085 0.12 +1.1 339,098 - AZOBR_RS31085 0.12 +0.3 339,098 - AZOBR_RS31085 0.12 -0.1 339,098 - AZOBR_RS31085 0.12 +0.3 339,194 - AZOBR_RS31085 0.25 +0.0 339,515 - AZOBR_RS31085 0.68 +1.3 339,517 + AZOBR_RS31085 0.68 -0.0 340,243 + AZOBR_RS31090 0.41 -0.8 340,244 - -0.2 340,372 + AZOBR_RS31090 0.59 +0.5 340,372 + AZOBR_RS31090 0.59 -1.3 340,373 - AZOBR_RS31090 0.60 -0.9 340,492 + AZOBR_RS31090 0.76 +1.4 340,492 + AZOBR_RS31090 0.76 -0.3 340,493 - AZOBR_RS31090 0.77 +0.1 340,495 + AZOBR_RS31090 0.77 -0.0 340,495 + AZOBR_RS31090 0.77 -0.0 340,657 + +0.3 340,657 + -0.3
Or see this region's nucleotide sequence