Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS27920

Experiment: benzoic 0.29 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS27920 and AZOBR_RS27925 are separated by 11 nucleotides AZOBR_RS27920: AZOBR_RS27920 - xylose isomerase, at 433,599 to 434,906 _RS27920 AZOBR_RS27925: AZOBR_RS27925 - oxidoreductase, at 434,918 to 436,093 _RS27925 Position (kb) 433 434 435Strain fitness (log2 ratio) -3 -2 -1 0 1at 432.603 kb on - strandat 432.957 kb on + strandat 432.958 kb on - strandat 433.566 kb on + strandat 433.566 kb on + strandat 433.566 kb on + strandat 433.566 kb on + strandat 433.567 kb on - strandat 434.153 kb on - strand, within AZOBR_RS27920at 434.177 kb on - strand, within AZOBR_RS27920at 434.177 kb on - strand, within AZOBR_RS27920at 434.351 kb on - strand, within AZOBR_RS27920at 434.351 kb on - strand, within AZOBR_RS27920at 434.351 kb on - strand, within AZOBR_RS27920at 434.456 kb on - strand, within AZOBR_RS27920at 434.761 kb on + strand, within AZOBR_RS27920at 434.824 kb on + strandat 434.893 kb on + strandat 434.893 kb on + strandat 435.078 kb on + strand, within AZOBR_RS27925at 435.103 kb on - strand, within AZOBR_RS27925at 435.655 kb on - strand, within AZOBR_RS27925at 435.655 kb on - strand, within AZOBR_RS27925at 435.882 kb on + strand, within AZOBR_RS27925

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Per-strain Table

Position Strand Gene LocusTag Fraction benzoic 0.29 mg/ml
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432,603 - -0.2
432,957 + -0.4
432,958 - -0.6
433,566 + -0.3
433,566 + +0.0
433,566 + +0.1
433,566 + -0.5
433,567 - -0.1
434,153 - AZOBR_RS27920 0.42 -1.7
434,177 - AZOBR_RS27920 0.44 +0.1
434,177 - AZOBR_RS27920 0.44 -1.2
434,351 - AZOBR_RS27920 0.57 -0.2
434,351 - AZOBR_RS27920 0.57 -3.4
434,351 - AZOBR_RS27920 0.57 +0.9
434,456 - AZOBR_RS27920 0.66 +0.2
434,761 + AZOBR_RS27920 0.89 -0.8
434,824 + +0.0
434,893 + +0.0
434,893 + -0.2
435,078 + AZOBR_RS27925 0.14 -0.5
435,103 - AZOBR_RS27925 0.16 -0.0
435,655 - AZOBR_RS27925 0.63 -0.4
435,655 - AZOBR_RS27925 0.63 -0.6
435,882 + AZOBR_RS27925 0.82 +0.1

Or see this region's nucleotide sequence