Experiment: benzoic 0.29 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS23500 and AZOBR_RS23505 overlap by 4 nucleotides AZOBR_RS23505 and AZOBR_RS23510 are separated by 35 nucleotides
AZOBR_RS23500: AZOBR_RS23500 - transcriptional regulator IclR family, at 301,706 to 302,494
_RS23500
AZOBR_RS23505: AZOBR_RS23505 - N-formimino-L-glutamate deiminase, at 302,491 to 303,879
_RS23505
AZOBR_RS23510: AZOBR_RS23510 - N-formylglutamate amidohydrolase, at 303,915 to 304,715
_RS23510
Position (kb) 302
303
304 Strain fitness (log2 ratio) -1
0
1 at 301.581 kb on - strand at 302.007 kb on + strand, within AZOBR_RS23500 at 302.007 kb on + strand, within AZOBR_RS23500 at 302.008 kb on - strand, within AZOBR_RS23500 at 302.008 kb on - strand, within AZOBR_RS23500 at 302.133 kb on + strand, within AZOBR_RS23500 at 302.139 kb on + strand, within AZOBR_RS23500 at 302.140 kb on - strand, within AZOBR_RS23500 at 302.140 kb on - strand, within AZOBR_RS23500 at 302.140 kb on - strand, within AZOBR_RS23500 at 302.140 kb on - strand, within AZOBR_RS23500 at 302.140 kb on - strand, within AZOBR_RS23500 at 302.212 kb on - strand, within AZOBR_RS23500 at 302.212 kb on - strand, within AZOBR_RS23500 at 302.250 kb on + strand, within AZOBR_RS23500 at 302.250 kb on + strand, within AZOBR_RS23500 at 302.251 kb on - strand, within AZOBR_RS23500 at 302.251 kb on - strand, within AZOBR_RS23500 at 302.251 kb on - strand, within AZOBR_RS23500 at 302.251 kb on - strand, within AZOBR_RS23500 at 302.251 kb on - strand, within AZOBR_RS23500 at 302.251 kb on - strand, within AZOBR_RS23500 at 302.319 kb on + strand, within AZOBR_RS23500 at 302.320 kb on - strand, within AZOBR_RS23500 at 302.469 kb on + strand at 302.469 kb on + strand at 302.469 kb on + strand at 302.469 kb on + strand at 302.469 kb on + strand at 302.470 kb on - strand at 302.470 kb on - strand at 302.470 kb on - strand at 302.470 kb on - strand at 302.470 kb on - strand at 302.470 kb on - strand at 302.470 kb on - strand at 302.470 kb on - strand at 302.633 kb on + strand, within AZOBR_RS23505 at 302.633 kb on + strand, within AZOBR_RS23505 at 302.633 kb on + strand, within AZOBR_RS23505 at 302.634 kb on - strand, within AZOBR_RS23505 at 302.634 kb on - strand, within AZOBR_RS23505 at 302.634 kb on - strand at 303.405 kb on - strand, within AZOBR_RS23505 at 303.405 kb on - strand, within AZOBR_RS23505 at 303.405 kb on - strand, within AZOBR_RS23505 at 303.489 kb on - strand, within AZOBR_RS23505 at 303.489 kb on - strand, within AZOBR_RS23505 at 303.518 kb on + strand, within AZOBR_RS23505 at 303.519 kb on - strand, within AZOBR_RS23505 at 303.542 kb on + strand, within AZOBR_RS23505 at 303.542 kb on + strand, within AZOBR_RS23505 at 303.543 kb on - strand, within AZOBR_RS23505 at 303.567 kb on - strand, within AZOBR_RS23505 at 303.567 kb on - strand, within AZOBR_RS23505 at 303.623 kb on + strand, within AZOBR_RS23505 at 303.624 kb on - strand, within AZOBR_RS23505 at 303.624 kb on - strand, within AZOBR_RS23505 at 303.672 kb on - strand, within AZOBR_RS23505 at 304.027 kb on + strand, within AZOBR_RS23510 at 304.027 kb on + strand, within AZOBR_RS23510 at 304.027 kb on + strand, within AZOBR_RS23510 at 304.027 kb on + strand, within AZOBR_RS23510 at 304.027 kb on + strand, within AZOBR_RS23510 at 304.027 kb on + strand, within AZOBR_RS23510 at 304.028 kb on - strand, within AZOBR_RS23510 at 304.028 kb on - strand, within AZOBR_RS23510 at 304.028 kb on - strand, within AZOBR_RS23510 at 304.028 kb on - strand, within AZOBR_RS23510 at 304.028 kb on - strand, within AZOBR_RS23510 at 304.414 kb on + strand, within AZOBR_RS23510 at 304.414 kb on + strand, within AZOBR_RS23510 at 304.472 kb on - strand, within AZOBR_RS23510 at 304.513 kb on + strand, within AZOBR_RS23510 at 304.513 kb on + strand, within AZOBR_RS23510 at 304.514 kb on - strand, within AZOBR_RS23510 at 304.567 kb on + strand, within AZOBR_RS23510 at 304.567 kb on + strand, within AZOBR_RS23510 at 304.568 kb on - strand, within AZOBR_RS23510 at 304.802 kb on + strand at 304.803 kb on - strand at 304.803 kb on - strand at 304.851 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction benzoic 0.29 mg/ml remove 301,581 - +0.4 302,007 + AZOBR_RS23500 0.38 +0.3 302,007 + AZOBR_RS23500 0.38 +1.3 302,008 - AZOBR_RS23500 0.38 +1.0 302,008 - AZOBR_RS23500 0.38 +0.3 302,133 + AZOBR_RS23500 0.54 +1.1 302,139 + AZOBR_RS23500 0.55 +0.6 302,140 - AZOBR_RS23500 0.55 -0.4 302,140 - AZOBR_RS23500 0.55 +0.7 302,140 - AZOBR_RS23500 0.55 +0.8 302,140 - AZOBR_RS23500 0.55 +0.8 302,140 - AZOBR_RS23500 0.55 +0.6 302,212 - AZOBR_RS23500 0.64 +0.3 302,212 - AZOBR_RS23500 0.64 +0.1 302,250 + AZOBR_RS23500 0.69 +0.5 302,250 + AZOBR_RS23500 0.69 +0.9 302,251 - AZOBR_RS23500 0.69 +0.1 302,251 - AZOBR_RS23500 0.69 +0.5 302,251 - AZOBR_RS23500 0.69 +1.2 302,251 - AZOBR_RS23500 0.69 +0.7 302,251 - AZOBR_RS23500 0.69 +1.1 302,251 - AZOBR_RS23500 0.69 +0.2 302,319 + AZOBR_RS23500 0.78 +0.5 302,320 - AZOBR_RS23500 0.78 +0.7 302,469 + +0.7 302,469 + +0.4 302,469 + +1.5 302,469 + +0.8 302,469 + +0.3 302,470 - +0.3 302,470 - +0.7 302,470 - +0.5 302,470 - +0.6 302,470 - +0.6 302,470 - +0.5 302,470 - +0.6 302,470 - +0.7 302,633 + AZOBR_RS23505 0.10 +0.3 302,633 + AZOBR_RS23505 0.10 +0.2 302,633 + AZOBR_RS23505 0.10 +0.8 302,634 - AZOBR_RS23505 0.10 +0.2 302,634 - AZOBR_RS23505 0.10 -0.2 302,634 - +0.5 303,405 - AZOBR_RS23505 0.66 -0.2 303,405 - AZOBR_RS23505 0.66 -0.2 303,405 - AZOBR_RS23505 0.66 -0.2 303,489 - AZOBR_RS23505 0.72 +0.9 303,489 - AZOBR_RS23505 0.72 +0.5 303,518 + AZOBR_RS23505 0.74 -0.0 303,519 - AZOBR_RS23505 0.74 +0.2 303,542 + AZOBR_RS23505 0.76 +0.1 303,542 + AZOBR_RS23505 0.76 -0.3 303,543 - AZOBR_RS23505 0.76 +0.5 303,567 - AZOBR_RS23505 0.77 -0.4 303,567 - AZOBR_RS23505 0.77 +0.4 303,623 + AZOBR_RS23505 0.81 -0.0 303,624 - AZOBR_RS23505 0.82 -1.3 303,624 - AZOBR_RS23505 0.82 +0.7 303,672 - AZOBR_RS23505 0.85 -0.3 304,027 + AZOBR_RS23510 0.14 -0.3 304,027 + AZOBR_RS23510 0.14 +0.3 304,027 + AZOBR_RS23510 0.14 -0.8 304,027 + AZOBR_RS23510 0.14 +0.6 304,027 + AZOBR_RS23510 0.14 +0.2 304,027 + AZOBR_RS23510 0.14 +0.1 304,028 - AZOBR_RS23510 0.14 +0.4 304,028 - AZOBR_RS23510 0.14 +0.1 304,028 - AZOBR_RS23510 0.14 +0.7 304,028 - AZOBR_RS23510 0.14 +0.5 304,028 - AZOBR_RS23510 0.14 +0.2 304,414 + AZOBR_RS23510 0.62 +1.5 304,414 + AZOBR_RS23510 0.62 +0.5 304,472 - AZOBR_RS23510 0.70 +0.5 304,513 + AZOBR_RS23510 0.75 -0.0 304,513 + AZOBR_RS23510 0.75 +0.0 304,514 - AZOBR_RS23510 0.75 +0.5 304,567 + AZOBR_RS23510 0.81 +0.3 304,567 + AZOBR_RS23510 0.81 +0.3 304,568 - AZOBR_RS23510 0.82 +1.4 304,802 + -0.0 304,803 - -1.5 304,803 - -1.6 304,851 + +0.5
Or see this region's nucleotide sequence