Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS20440

Experiment: benzoic 0.29 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS20435 and AZOBR_RS20440 are separated by 145 nucleotidesAZOBR_RS20440 and AZOBR_RS20445 are separated by 60 nucleotidesAZOBR_RS20445 and AZOBR_RS20450 are separated by 88 nucleotides AZOBR_RS20435: AZOBR_RS20435 - membrane protein, at 1,353,301 to 1,354,158 _RS20435 AZOBR_RS20440: AZOBR_RS20440 - cupin, at 1,354,304 to 1,354,732 _RS20440 AZOBR_RS20445: AZOBR_RS20445 - glutathione S-transferase, at 1,354,793 to 1,355,353 _RS20445 AZOBR_RS20450: AZOBR_RS20450 - hydroxyacylglutathione hydrolase, at 1,355,442 to 1,356,203 _RS20450 Position (kb) 1354 1355Strain fitness (log2 ratio) -2 -1 0 1 2at 1353.523 kb on + strand, within AZOBR_RS20435at 1353.781 kb on + strand, within AZOBR_RS20435at 1353.781 kb on + strand, within AZOBR_RS20435at 1354.018 kb on + strand, within AZOBR_RS20435at 1354.156 kb on + strandat 1354.164 kb on - strandat 1354.599 kb on + strand, within AZOBR_RS20440at 1354.599 kb on + strand, within AZOBR_RS20440at 1354.662 kb on + strand, within AZOBR_RS20440at 1354.662 kb on + strand, within AZOBR_RS20440at 1354.663 kb on - strand, within AZOBR_RS20440at 1354.663 kb on - strandat 1355.166 kb on + strand, within AZOBR_RS20445at 1355.166 kb on + strand, within AZOBR_RS20445at 1355.322 kb on + strandat 1355.322 kb on + strandat 1355.322 kb on + strandat 1355.377 kb on - strandat 1355.425 kb on + strandat 1355.425 kb on + strandat 1355.426 kb on - strandat 1355.616 kb on + strand, within AZOBR_RS20450at 1355.616 kb on + strand, within AZOBR_RS20450at 1355.617 kb on - strand, within AZOBR_RS20450at 1355.617 kb on - strand, within AZOBR_RS20450at 1355.617 kb on - strand, within AZOBR_RS20450at 1355.692 kb on + strand, within AZOBR_RS20450at 1355.692 kb on + strand, within AZOBR_RS20450at 1355.692 kb on + strand, within AZOBR_RS20450at 1355.692 kb on + strand, within AZOBR_RS20450at 1355.692 kb on + strand, within AZOBR_RS20450at 1355.692 kb on + strand, within AZOBR_RS20450at 1355.692 kb on + strand, within AZOBR_RS20450at 1355.693 kb on - strand, within AZOBR_RS20450at 1355.693 kb on - strand, within AZOBR_RS20450at 1355.693 kb on - strand, within AZOBR_RS20450at 1355.693 kb on - strand, within AZOBR_RS20450

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Per-strain Table

Position Strand Gene LocusTag Fraction benzoic 0.29 mg/ml
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1,353,523 + AZOBR_RS20435 0.26 -1.4
1,353,781 + AZOBR_RS20435 0.56 -0.3
1,353,781 + AZOBR_RS20435 0.56 +0.5
1,354,018 + AZOBR_RS20435 0.84 -0.2
1,354,156 + -0.3
1,354,164 - -0.3
1,354,599 + AZOBR_RS20440 0.69 -0.8
1,354,599 + AZOBR_RS20440 0.69 +0.0
1,354,662 + AZOBR_RS20440 0.83 -0.4
1,354,662 + AZOBR_RS20440 0.83 -2.3
1,354,663 - AZOBR_RS20440 0.84 -0.1
1,354,663 - +0.3
1,355,166 + AZOBR_RS20445 0.66 +0.1
1,355,166 + AZOBR_RS20445 0.66 -0.3
1,355,322 + +0.7
1,355,322 + +2.7
1,355,322 + +0.3
1,355,377 - -0.9
1,355,425 + -0.9
1,355,425 + +0.4
1,355,426 - +0.2
1,355,616 + AZOBR_RS20450 0.23 +0.2
1,355,616 + AZOBR_RS20450 0.23 -0.5
1,355,617 - AZOBR_RS20450 0.23 +0.2
1,355,617 - AZOBR_RS20450 0.23 -0.0
1,355,617 - AZOBR_RS20450 0.23 -0.5
1,355,692 + AZOBR_RS20450 0.33 +0.4
1,355,692 + AZOBR_RS20450 0.33 +1.2
1,355,692 + AZOBR_RS20450 0.33 -0.4
1,355,692 + AZOBR_RS20450 0.33 -0.4
1,355,692 + AZOBR_RS20450 0.33 +0.1
1,355,692 + AZOBR_RS20450 0.33 -0.7
1,355,692 + AZOBR_RS20450 0.33 -0.7
1,355,693 - AZOBR_RS20450 0.33 +0.1
1,355,693 - AZOBR_RS20450 0.33 +1.2
1,355,693 - AZOBR_RS20450 0.33 +0.1
1,355,693 - AZOBR_RS20450 0.33 +0.0

Or see this region's nucleotide sequence