Experiment: benzoic 0.29 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS18170 and AZOBR_RS18175 are separated by 257 nucleotides AZOBR_RS18175 and AZOBR_RS18180 are separated by 4 nucleotides AZOBR_RS18180 and AZOBR_RS18185 are separated by 60 nucleotides
AZOBR_RS18170: AZOBR_RS18170 - sugar ABC transporter, at 834,770 to 836,005
_RS18170
AZOBR_RS18175: AZOBR_RS18175 - sugar ABC transporter, at 836,263 to 837,150
_RS18175
AZOBR_RS18180: AZOBR_RS18180 - sugar ABC transporter, at 837,155 to 837,976
_RS18180
AZOBR_RS18185: AZOBR_RS18185 - sugar ABC transporter, at 838,037 to 839,191
_RS18185
Position (kb) 836
837
838 Strain fitness (log2 ratio) -2
-1
0
1 at 835.298 kb on + strand, within AZOBR_RS18170 at 835.298 kb on + strand, within AZOBR_RS18170 at 835.298 kb on + strand, within AZOBR_RS18170 at 835.299 kb on - strand, within AZOBR_RS18170 at 835.346 kb on + strand, within AZOBR_RS18170 at 835.448 kb on + strand, within AZOBR_RS18170 at 835.460 kb on + strand, within AZOBR_RS18170 at 835.502 kb on + strand, within AZOBR_RS18170 at 835.503 kb on - strand, within AZOBR_RS18170 at 835.503 kb on - strand, within AZOBR_RS18170 at 835.824 kb on - strand, within AZOBR_RS18170 at 836.003 kb on + strand at 836.047 kb on - strand at 836.047 kb on - strand at 836.110 kb on - strand at 836.110 kb on - strand at 836.110 kb on - strand at 836.110 kb on - strand at 836.110 kb on - strand at 836.110 kb on - strand at 836.110 kb on - strand at 836.110 kb on - strand at 836.315 kb on - strand at 836.404 kb on + strand, within AZOBR_RS18175 at 836.404 kb on + strand, within AZOBR_RS18175 at 836.405 kb on - strand, within AZOBR_RS18175 at 836.405 kb on - strand, within AZOBR_RS18175 at 836.405 kb on - strand, within AZOBR_RS18175 at 836.405 kb on - strand, within AZOBR_RS18175 at 836.405 kb on - strand, within AZOBR_RS18175 at 836.648 kb on - strand, within AZOBR_RS18175 at 836.923 kb on - strand, within AZOBR_RS18175 at 837.031 kb on + strand, within AZOBR_RS18175 at 837.032 kb on - strand, within AZOBR_RS18175 at 837.103 kb on + strand at 837.104 kb on - strand at 837.225 kb on - strand at 837.773 kb on + strand, within AZOBR_RS18180 at 837.773 kb on + strand, within AZOBR_RS18180 at 837.773 kb on + strand, within AZOBR_RS18180 at 837.773 kb on + strand, within AZOBR_RS18180 at 837.774 kb on - strand, within AZOBR_RS18180 at 837.774 kb on - strand, within AZOBR_RS18180 at 837.774 kb on - strand, within AZOBR_RS18180 at 837.893 kb on + strand, within AZOBR_RS18180 at 837.917 kb on + strand at 837.935 kb on + strand at 837.935 kb on + strand at 837.936 kb on - strand at 837.936 kb on - strand at 838.022 kb on - strand at 838.042 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction benzoic 0.29 mg/ml remove 835,298 + AZOBR_RS18170 0.43 +0.6 835,298 + AZOBR_RS18170 0.43 +0.4 835,298 + AZOBR_RS18170 0.43 +0.6 835,299 - AZOBR_RS18170 0.43 -0.0 835,346 + AZOBR_RS18170 0.47 +0.5 835,448 + AZOBR_RS18170 0.55 -1.0 835,460 + AZOBR_RS18170 0.56 +0.2 835,502 + AZOBR_RS18170 0.59 -0.4 835,503 - AZOBR_RS18170 0.59 +0.5 835,503 - AZOBR_RS18170 0.59 +0.8 835,824 - AZOBR_RS18170 0.85 +0.3 836,003 + -0.3 836,047 - -0.6 836,047 - -0.7 836,110 - +0.9 836,110 - +0.2 836,110 - +0.0 836,110 - +0.0 836,110 - -0.2 836,110 - +0.1 836,110 - -0.2 836,110 - -0.7 836,315 - -1.4 836,404 + AZOBR_RS18175 0.16 -0.5 836,404 + AZOBR_RS18175 0.16 +0.5 836,405 - AZOBR_RS18175 0.16 -0.0 836,405 - AZOBR_RS18175 0.16 +0.4 836,405 - AZOBR_RS18175 0.16 -0.5 836,405 - AZOBR_RS18175 0.16 -0.1 836,405 - AZOBR_RS18175 0.16 +0.2 836,648 - AZOBR_RS18175 0.43 +1.2 836,923 - AZOBR_RS18175 0.74 +0.9 837,031 + AZOBR_RS18175 0.86 -0.2 837,032 - AZOBR_RS18175 0.87 +0.2 837,103 + +0.0 837,104 - +0.5 837,225 - +0.4 837,773 + AZOBR_RS18180 0.75 -1.2 837,773 + AZOBR_RS18180 0.75 -2.4 837,773 + AZOBR_RS18180 0.75 +0.5 837,773 + AZOBR_RS18180 0.75 -0.2 837,774 - AZOBR_RS18180 0.75 -0.9 837,774 - AZOBR_RS18180 0.75 -0.6 837,774 - AZOBR_RS18180 0.75 -0.1 837,893 + AZOBR_RS18180 0.90 -0.2 837,917 + +0.1 837,935 + +0.0 837,935 + +0.3 837,936 - +0.1 837,936 - +0.7 838,022 - +0.7 838,042 + +0.1
Or see this region's nucleotide sequence