Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS11265

Experiment: benzoic 0.29 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS11255 and AZOBR_RS11260 are separated by 110 nucleotidesAZOBR_RS11260 and AZOBR_RS11265 overlap by 8 nucleotidesAZOBR_RS11265 and AZOBR_RS11270 are separated by 614 nucleotides AZOBR_RS11255: AZOBR_RS11255 - flagellar basal body P-ring biosynthesis protein FlgA, at 2,367,103 to 2,368,236 _RS11255 AZOBR_RS11260: AZOBR_RS11260 - flagellar rod assembly protein FlgJ, at 2,368,347 to 2,368,643 _RS11260 AZOBR_RS11265: AZOBR_RS11265 - flagellar basal-body protein, at 2,368,636 to 2,369,151 _RS11265 AZOBR_RS11270: AZOBR_RS11270 - hypothetical protein, at 2,369,766 to 2,371,418 _RS11270 Position (kb) 2368 2369 2370Strain fitness (log2 ratio) -1 0 1at 2368.133 kb on + strandat 2368.242 kb on - strandat 2368.602 kb on + strand, within AZOBR_RS11260at 2368.847 kb on - strand, within AZOBR_RS11265at 2368.945 kb on + strand, within AZOBR_RS11265at 2369.063 kb on - strand, within AZOBR_RS11265at 2369.096 kb on - strand, within AZOBR_RS11265at 2369.096 kb on - strand, within AZOBR_RS11265at 2369.096 kb on - strand, within AZOBR_RS11265at 2369.096 kb on - strand, within AZOBR_RS11265at 2369.096 kb on - strand, within AZOBR_RS11265at 2369.096 kb on - strand, within AZOBR_RS11265at 2369.327 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction benzoic 0.29 mg/ml
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2,368,133 + -0.2
2,368,242 - -0.5
2,368,602 + AZOBR_RS11260 0.86 -0.4
2,368,847 - AZOBR_RS11265 0.41 +0.2
2,368,945 + AZOBR_RS11265 0.60 -1.5
2,369,063 - AZOBR_RS11265 0.83 -1.0
2,369,096 - AZOBR_RS11265 0.89 -0.4
2,369,096 - AZOBR_RS11265 0.89 -0.5
2,369,096 - AZOBR_RS11265 0.89 +0.2
2,369,096 - AZOBR_RS11265 0.89 -1.1
2,369,096 - AZOBR_RS11265 0.89 +0.0
2,369,096 - AZOBR_RS11265 0.89 -0.5
2,369,327 + -0.4

Or see this region's nucleotide sequence