Experiment: benzoic 0.29 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS08160 and AZOBR_RS08165 are separated by 351 nucleotides AZOBR_RS08165 and AZOBR_RS08170 are separated by 24 nucleotides AZOBR_RS08170 and AZOBR_RS08175 are separated by 354 nucleotides AZOBR_RS08175 and AZOBR_RS08180 are separated by 97 nucleotides
AZOBR_RS08160: AZOBR_RS08160 - sugar transporter, at 1,717,815 to 1,720,814
_RS08160
AZOBR_RS08165: AZOBR_RS08165 - hypothetical protein, at 1,721,166 to 1,721,663
_RS08165
AZOBR_RS08170: AZOBR_RS08170 - carbon-nitrogen family hydrolase, at 1,721,688 to 1,722,584
_RS08170
AZOBR_RS08175: AZOBR_RS08175 - transcriptional regulator, at 1,722,939 to 1,723,451
_RS08175
AZOBR_RS08180: AZOBR_RS08180 - hypothetical protein, at 1,723,549 to 1,724,859
_RS08180
Position (kb)
1721
1722
1723 Strain fitness (log2 ratio)
-2
-1
0
1 at 1720.825 kb on - strand at 1720.911 kb on - strand at 1720.974 kb on + strand at 1720.974 kb on + strand at 1720.975 kb on - strand at 1721.887 kb on + strand, within AZOBR_RS08170 at 1721.887 kb on + strand, within AZOBR_RS08170 at 1721.887 kb on + strand, within AZOBR_RS08170 at 1721.887 kb on + strand, within AZOBR_RS08170 at 1721.887 kb on + strand, within AZOBR_RS08170 at 1721.888 kb on - strand, within AZOBR_RS08170 at 1722.047 kb on - strand, within AZOBR_RS08170 at 1722.137 kb on - strand, within AZOBR_RS08170 at 1722.149 kb on - strand, within AZOBR_RS08170 at 1722.149 kb on - strand, within AZOBR_RS08170 at 1722.184 kb on + strand, within AZOBR_RS08170 at 1722.185 kb on - strand, within AZOBR_RS08170 at 1722.229 kb on + strand, within AZOBR_RS08170 at 1722.277 kb on + strand, within AZOBR_RS08170 at 1722.277 kb on + strand, within AZOBR_RS08170 at 1722.277 kb on + strand, within AZOBR_RS08170 at 1722.278 kb on - strand, within AZOBR_RS08170 at 1722.278 kb on - strand, within AZOBR_RS08170 at 1722.280 kb on + strand, within AZOBR_RS08170 at 1722.280 kb on + strand, within AZOBR_RS08170 at 1722.425 kb on - strand, within AZOBR_RS08170 at 1722.425 kb on - strand, within AZOBR_RS08170 at 1722.425 kb on - strand, within AZOBR_RS08170 at 1722.584 kb on + strand at 1722.766 kb on + strand at 1722.767 kb on - strand at 1722.783 kb on - strand at 1722.896 kb on - strand at 1723.147 kb on - strand, within AZOBR_RS08175 at 1723.311 kb on + strand, within AZOBR_RS08175 at 1723.311 kb on + strand, within AZOBR_RS08175
Per-strain Table
Position Strand Gene LocusTag Fraction benzoic 0.29 mg/ml remove 1,720,825 - -0.0 1,720,911 - +1.7 1,720,974 + -1.0 1,720,974 + -0.0 1,720,975 - -0.1 1,721,887 + AZOBR_RS08170 0.22 -0.3 1,721,887 + AZOBR_RS08170 0.22 +1.7 1,721,887 + AZOBR_RS08170 0.22 +0.3 1,721,887 + AZOBR_RS08170 0.22 -0.7 1,721,887 + AZOBR_RS08170 0.22 -0.3 1,721,888 - AZOBR_RS08170 0.22 -0.1 1,722,047 - AZOBR_RS08170 0.40 -0.1 1,722,137 - AZOBR_RS08170 0.50 +0.7 1,722,149 - AZOBR_RS08170 0.51 -0.0 1,722,149 - AZOBR_RS08170 0.51 +1.0 1,722,184 + AZOBR_RS08170 0.55 -2.1 1,722,185 - AZOBR_RS08170 0.55 +0.2 1,722,229 + AZOBR_RS08170 0.60 -0.0 1,722,277 + AZOBR_RS08170 0.66 -0.0 1,722,277 + AZOBR_RS08170 0.66 -1.1 1,722,277 + AZOBR_RS08170 0.66 +0.5 1,722,278 - AZOBR_RS08170 0.66 -0.5 1,722,278 - AZOBR_RS08170 0.66 -0.3 1,722,280 + AZOBR_RS08170 0.66 -0.2 1,722,280 + AZOBR_RS08170 0.66 -0.1 1,722,425 - AZOBR_RS08170 0.82 +0.0 1,722,425 - AZOBR_RS08170 0.82 +0.2 1,722,425 - AZOBR_RS08170 0.82 -0.2 1,722,584 + -0.2 1,722,766 + -0.0 1,722,767 - +0.4 1,722,783 - -0.5 1,722,896 - +0.6 1,723,147 - AZOBR_RS08175 0.41 -0.6 1,723,311 + AZOBR_RS08175 0.73 -1.4 1,723,311 + AZOBR_RS08175 0.73 -0.7
Or see this region's nucleotide sequence