Experiment: benzoic 0.29 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS02000 and AZOBR_RS02005 are separated by 466 nucleotides AZOBR_RS02005 and AZOBR_RS02010 are separated by 88 nucleotides AZOBR_RS02010 and AZOBR_RS02015 are separated by 211 nucleotides AZOBR_RS02015 and AZOBR_RS02020 overlap by 4 nucleotides
AZOBR_RS02000: AZOBR_RS02000 - 5-carboxymethyl-2-hydroxymuconate isomerase, at 410,176 to 410,859
_RS02000
AZOBR_RS02005: AZOBR_RS02005 - transcriptional regulator, at 411,326 to 411,751
_RS02005
AZOBR_RS02010: AZOBR_RS02010 - glutamine amidotransferase, at 411,840 to 412,601
_RS02010
AZOBR_RS02015: AZOBR_RS02015 - S-adenosylmethionine decarboxylase, at 412,813 to 413,322
_RS02015
AZOBR_RS02020: AZOBR_RS02020 - spermidine synthase, at 413,319 to 414,179
_RS02020
Position (kb) 411
412
413 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 410.852 kb on + strand at 411.100 kb on + strand at 411.100 kb on + strand at 411.101 kb on - strand at 411.216 kb on + strand at 411.216 kb on + strand at 411.227 kb on + strand at 411.228 kb on - strand at 411.228 kb on - strand at 411.228 kb on - strand at 411.232 kb on + strand at 411.232 kb on + strand at 411.232 kb on + strand at 411.233 kb on - strand at 411.233 kb on - strand at 411.359 kb on + strand at 411.599 kb on + strand, within AZOBR_RS02005 at 411.815 kb on + strand at 412.147 kb on + strand, within AZOBR_RS02010 at 412.148 kb on - strand, within AZOBR_RS02010 at 412.192 kb on + strand, within AZOBR_RS02010 at 412.519 kb on + strand, within AZOBR_RS02010 at 412.519 kb on + strand, within AZOBR_RS02010 at 412.519 kb on + strand, within AZOBR_RS02010 at 412.519 kb on + strand, within AZOBR_RS02010 at 412.519 kb on + strand, within AZOBR_RS02010 at 412.519 kb on + strand, within AZOBR_RS02010 at 412.519 kb on + strand, within AZOBR_RS02010 at 412.519 kb on + strand, within AZOBR_RS02010 at 412.519 kb on + strand, within AZOBR_RS02010 at 412.519 kb on + strand, within AZOBR_RS02010 at 412.519 kb on + strand, within AZOBR_RS02010 at 412.519 kb on + strand, within AZOBR_RS02010 at 412.520 kb on - strand, within AZOBR_RS02010 at 412.520 kb on - strand, within AZOBR_RS02010 at 412.520 kb on - strand, within AZOBR_RS02010 at 412.520 kb on - strand, within AZOBR_RS02010 at 412.520 kb on - strand, within AZOBR_RS02010 at 412.520 kb on - strand, within AZOBR_RS02010 at 412.520 kb on - strand, within AZOBR_RS02010 at 412.520 kb on - strand, within AZOBR_RS02010 at 412.758 kb on + strand at 413.361 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction benzoic 0.29 mg/ml remove 410,852 + -0.7 411,100 + -0.0 411,100 + +0.4 411,101 - +0.1 411,216 + -0.2 411,216 + -0.7 411,227 + -3.0 411,228 - +2.0 411,228 - +0.8 411,228 - -0.5 411,232 + -0.0 411,232 + +0.4 411,232 + -1.5 411,233 - -1.1 411,233 - +0.3 411,359 + -1.5 411,599 + AZOBR_RS02005 0.64 +0.5 411,815 + -0.5 412,147 + AZOBR_RS02010 0.40 -0.2 412,148 - AZOBR_RS02010 0.40 +0.2 412,192 + AZOBR_RS02010 0.46 +0.4 412,519 + AZOBR_RS02010 0.89 +0.5 412,519 + AZOBR_RS02010 0.89 +0.1 412,519 + AZOBR_RS02010 0.89 +0.0 412,519 + AZOBR_RS02010 0.89 +0.4 412,519 + AZOBR_RS02010 0.89 +0.1 412,519 + AZOBR_RS02010 0.89 +0.3 412,519 + AZOBR_RS02010 0.89 +0.3 412,519 + AZOBR_RS02010 0.89 -0.8 412,519 + AZOBR_RS02010 0.89 +0.1 412,519 + AZOBR_RS02010 0.89 -0.4 412,519 + AZOBR_RS02010 0.89 +0.5 412,519 + AZOBR_RS02010 0.89 +0.2 412,520 - AZOBR_RS02010 0.89 -0.7 412,520 - AZOBR_RS02010 0.89 -0.3 412,520 - AZOBR_RS02010 0.89 -0.1 412,520 - AZOBR_RS02010 0.89 -0.7 412,520 - AZOBR_RS02010 0.89 +0.8 412,520 - AZOBR_RS02010 0.89 +1.4 412,520 - AZOBR_RS02010 0.89 +0.4 412,520 - AZOBR_RS02010 0.89 +0.1 412,758 + -0.2 413,361 - +0.2
Or see this region's nucleotide sequence