Experiment: D-Gluconic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_26865 and AO353_26870 are separated by 198 nucleotides AO353_26870 and AO353_26875 overlap by 8 nucleotides
AO353_26865: AO353_26865 - transcriptional regulator, at 5,889,146 to 5,890,126
_26865
AO353_26870: AO353_26870 - AP endonuclease, at 5,890,325 to 5,891,107
_26870
AO353_26875: AO353_26875 - 2-dehydro-3-deoxygluconokinase, at 5,891,100 to 5,892,080
_26875
Position (kb) 5890
5891
5892 Strain fitness (log2 ratio) -1
0
1 at 5889.479 kb on + strand, within AO353_26865 at 5889.479 kb on + strand, within AO353_26865 at 5889.479 kb on + strand, within AO353_26865 at 5889.480 kb on - strand, within AO353_26865 at 5889.959 kb on + strand, within AO353_26865 at 5889.982 kb on + strand, within AO353_26865 at 5889.983 kb on - strand, within AO353_26865 at 5890.193 kb on + strand at 5890.193 kb on + strand at 5890.193 kb on + strand at 5890.194 kb on - strand at 5890.194 kb on - strand at 5890.194 kb on - strand at 5890.194 kb on - strand at 5890.203 kb on - strand at 5890.203 kb on - strand at 5890.220 kb on - strand at 5890.330 kb on + strand at 5890.330 kb on + strand at 5890.330 kb on + strand at 5890.330 kb on + strand at 5890.330 kb on + strand at 5890.331 kb on - strand at 5890.331 kb on - strand at 5890.676 kb on + strand, within AO353_26870 at 5890.677 kb on - strand, within AO353_26870 at 5890.877 kb on + strand, within AO353_26870 at 5890.877 kb on + strand, within AO353_26870 at 5890.878 kb on - strand, within AO353_26870 at 5890.878 kb on - strand, within AO353_26870 at 5891.082 kb on + strand at 5891.082 kb on + strand at 5891.082 kb on + strand at 5891.083 kb on - strand at 5891.083 kb on - strand at 5891.083 kb on - strand at 5891.083 kb on - strand at 5891.217 kb on - strand, within AO353_26875 at 5891.217 kb on - strand, within AO353_26875 at 5891.217 kb on - strand, within AO353_26875 at 5891.377 kb on + strand, within AO353_26875 at 5891.377 kb on + strand, within AO353_26875 at 5891.378 kb on - strand, within AO353_26875 at 5891.378 kb on - strand, within AO353_26875 at 5891.378 kb on - strand, within AO353_26875 at 5891.418 kb on + strand, within AO353_26875 at 5891.418 kb on + strand, within AO353_26875 at 5891.418 kb on + strand, within AO353_26875 at 5891.748 kb on + strand, within AO353_26875 at 5891.749 kb on - strand, within AO353_26875 at 5891.802 kb on + strand, within AO353_26875 at 5891.802 kb on + strand, within AO353_26875 at 5891.802 kb on + strand, within AO353_26875 at 5891.802 kb on + strand, within AO353_26875 at 5891.802 kb on + strand, within AO353_26875 at 5891.803 kb on - strand, within AO353_26875 at 5891.803 kb on - strand, within AO353_26875 at 5891.803 kb on - strand, within AO353_26875 at 5891.833 kb on + strand, within AO353_26875
Per-strain Table
Position Strand Gene LocusTag Fraction D-Gluconic Acid (C) remove 5,889,479 + AO353_26865 0.34 +0.6 5,889,479 + AO353_26865 0.34 +0.0 5,889,479 + AO353_26865 0.34 -1.0 5,889,480 - AO353_26865 0.34 +0.2 5,889,959 + AO353_26865 0.83 -0.1 5,889,982 + AO353_26865 0.85 -0.8 5,889,983 - AO353_26865 0.85 +1.0 5,890,193 + -0.3 5,890,193 + +1.3 5,890,193 + -0.8 5,890,194 - -0.8 5,890,194 - -0.5 5,890,194 - -1.3 5,890,194 - -0.4 5,890,203 - -0.3 5,890,203 - +0.1 5,890,220 - +0.2 5,890,330 + +1.1 5,890,330 + -0.5 5,890,330 + -0.8 5,890,330 + +1.7 5,890,330 + +0.1 5,890,331 - -0.0 5,890,331 - -0.7 5,890,676 + AO353_26870 0.45 -1.0 5,890,677 - AO353_26870 0.45 +0.0 5,890,877 + AO353_26870 0.70 +0.7 5,890,877 + AO353_26870 0.70 +0.5 5,890,878 - AO353_26870 0.71 +0.5 5,890,878 - AO353_26870 0.71 +0.3 5,891,082 + +0.2 5,891,082 + +0.8 5,891,082 + -0.9 5,891,083 - -0.4 5,891,083 - -0.4 5,891,083 - -1.0 5,891,083 - +0.1 5,891,217 - AO353_26875 0.12 -0.3 5,891,217 - AO353_26875 0.12 -0.5 5,891,217 - AO353_26875 0.12 +0.2 5,891,377 + AO353_26875 0.28 -0.6 5,891,377 + AO353_26875 0.28 -0.9 5,891,378 - AO353_26875 0.28 +0.1 5,891,378 - AO353_26875 0.28 +0.1 5,891,378 - AO353_26875 0.28 +0.6 5,891,418 + AO353_26875 0.32 -0.9 5,891,418 + AO353_26875 0.32 -0.2 5,891,418 + AO353_26875 0.32 -0.3 5,891,748 + AO353_26875 0.66 -0.4 5,891,749 - AO353_26875 0.66 -0.6 5,891,802 + AO353_26875 0.72 -1.5 5,891,802 + AO353_26875 0.72 -0.0 5,891,802 + AO353_26875 0.72 +0.7 5,891,802 + AO353_26875 0.72 +0.4 5,891,802 + AO353_26875 0.72 +0.1 5,891,803 - AO353_26875 0.72 -0.5 5,891,803 - AO353_26875 0.72 +0.9 5,891,803 - AO353_26875 0.72 +0.4 5,891,833 + AO353_26875 0.75 +0.5
Or see this region's nucleotide sequence