Experiment: D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004264 and ABIE53_004265 are separated by 29 nucleotides ABIE53_004265 and ABIE53_004266 overlap by 4 nucleotides ABIE53_004266 and ABIE53_004267 overlap by 4 nucleotides
ABIE53_004264: ABIE53_004264 - enamidase, at 439,706 to 440,905
_004264
ABIE53_004265: ABIE53_004265 - branched-chain amino acid transport system ATP-binding protein, at 440,935 to 441,648
_004265
ABIE53_004266: ABIE53_004266 - branched-chain amino acid transport system ATP-binding protein, at 441,645 to 442,454
_004266
ABIE53_004267: ABIE53_004267 - branched-chain amino acid transport system permease protein, at 442,451 to 444,403
_004267
Position (kb) 440
441
442 Strain fitness (log2 ratio) -2
-1
0
1 at 440.178 kb on + strand, within ABIE53_004264 at 440.191 kb on + strand, within ABIE53_004264 at 440.310 kb on + strand, within ABIE53_004264 at 440.311 kb on - strand, within ABIE53_004264 at 440.729 kb on - strand, within ABIE53_004264 at 440.803 kb on + strand at 441.026 kb on + strand, within ABIE53_004265 at 441.026 kb on + strand, within ABIE53_004265 at 441.027 kb on - strand, within ABIE53_004265 at 441.027 kb on - strand, within ABIE53_004265 at 441.027 kb on - strand, within ABIE53_004265 at 441.426 kb on - strand, within ABIE53_004265 at 441.592 kb on - strand at 441.730 kb on + strand, within ABIE53_004266 at 441.730 kb on + strand, within ABIE53_004266 at 441.730 kb on + strand, within ABIE53_004266 at 441.731 kb on - strand, within ABIE53_004266 at 441.731 kb on - strand, within ABIE53_004266 at 441.804 kb on + strand, within ABIE53_004266 at 441.805 kb on - strand, within ABIE53_004266 at 442.016 kb on - strand, within ABIE53_004266 at 442.094 kb on - strand, within ABIE53_004266 at 442.171 kb on - strand, within ABIE53_004266 at 442.455 kb on - strand at 442.627 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Ribose (C) remove 440,178 + ABIE53_004264 0.39 -0.5 440,191 + ABIE53_004264 0.40 +0.2 440,310 + ABIE53_004264 0.50 +0.1 440,311 - ABIE53_004264 0.50 -1.1 440,729 - ABIE53_004264 0.85 +0.4 440,803 + +0.5 441,026 + ABIE53_004265 0.13 +0.1 441,026 + ABIE53_004265 0.13 +0.7 441,027 - ABIE53_004265 0.13 -1.5 441,027 - ABIE53_004265 0.13 -1.3 441,027 - ABIE53_004265 0.13 -1.4 441,426 - ABIE53_004265 0.69 -0.9 441,592 - -0.7 441,730 + ABIE53_004266 0.10 -1.8 441,730 + ABIE53_004266 0.10 -1.1 441,730 + ABIE53_004266 0.10 -1.5 441,731 - ABIE53_004266 0.11 -0.9 441,731 - ABIE53_004266 0.11 +0.1 441,804 + ABIE53_004266 0.20 +0.1 441,805 - ABIE53_004266 0.20 -0.2 442,016 - ABIE53_004266 0.46 +0.2 442,094 - ABIE53_004266 0.55 -0.5 442,171 - ABIE53_004266 0.65 -0.3 442,455 - -1.9 442,627 - +0.7
Or see this region's nucleotide sequence