Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_003378

Experiment: D-Ribose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Ribose (C)
3,799,178	+		ABIE53_003376	0.76	-0.5
3,799,178	+		ABIE53_003376	0.76	+0.9
3,799,178	+		ABIE53_003376	0.76	-0.2
3,799,178	+		ABIE53_003376	0.76	-0.1
3,799,178	+		ABIE53_003376	0.76	-1.0
3,799,179	-		ABIE53_003376	0.76	-0.0
3,799,179	-		ABIE53_003376	0.76	+1.1
3,799,179	-		ABIE53_003376	0.76	-1.6
3,799,179	-		ABIE53_003376	0.76	-0.3
3,799,247	+		ABIE53_003376	0.88	-2.0
3,799,248	-		ABIE53_003376	0.88	+0.4
3,799,248	-		ABIE53_003376	0.88	-0.2
3,799,248	-		ABIE53_003376	0.88	+0.0
3,799,385	+				+0.4
3,799,385	+				-0.7
3,799,399	-				+2.3
3,799,454	-				+0.4
3,799,454	-				-0.9
3,799,482	+				-1.3
3,799,482	+				-0.6
3,799,483	-				-0.8
3,799,483	-				-0.3
3,799,791	+		ABIE53_003377	0.44	-0.3
3,799,791	+		ABIE53_003377	0.44	+0.7
3,799,791	+		ABIE53_003377	0.44	+0.9
3,799,791	+		ABIE53_003377	0.44	+1.1
3,799,791	+		ABIE53_003377	0.44	-0.3
3,799,791	+		ABIE53_003377	0.44	-1.0
3,799,792	-		ABIE53_003377	0.44	+0.7
3,799,792	-		ABIE53_003377	0.44	-0.0
3,799,792	-		ABIE53_003377	0.44	+0.2
3,799,792	-		ABIE53_003377	0.44	+1.7
3,799,792	-		ABIE53_003377	0.44	+0.5
3,799,792	-		ABIE53_003377	0.44	+0.0
3,799,792	-		ABIE53_003377	0.44	-0.3
3,799,792	-		ABIE53_003377	0.44	+2.7
3,799,828	+		ABIE53_003377	0.51	+1.1
3,799,828	+		ABIE53_003377	0.51	+0.1
3,799,828	+		ABIE53_003377	0.51	-1.1
3,799,828	+		ABIE53_003377	0.51	-0.4
3,799,828	+		ABIE53_003377	0.51	-1.0
3,799,828	+		ABIE53_003377	0.51	+0.3
3,799,828	+		ABIE53_003377	0.51	-0.6
3,799,828	+		ABIE53_003377	0.51	-1.1
3,799,828	+		ABIE53_003377	0.51	+0.9
3,799,828	+		ABIE53_003377	0.51	+1.1
3,799,828	+		ABIE53_003377	0.51	-1.8
3,799,828	+		ABIE53_003377	0.51	+0.1
3,799,828	+		ABIE53_003377	0.51	-0.6
3,799,828	+		ABIE53_003377	0.51	-1.0
3,799,828	+		ABIE53_003377	0.51	-0.3
3,799,829	-		ABIE53_003377	0.51	+1.7
3,799,829	-		ABIE53_003377	0.51	-0.1
3,799,829	-		ABIE53_003377	0.51	-0.1
3,799,829	-		ABIE53_003377	0.51	+0.7
3,799,829	-		ABIE53_003377	0.51	+0.4
3,799,829	-		ABIE53_003377	0.51	-0.3
3,799,829	-		ABIE53_003377	0.51	-0.7
3,799,873	+		ABIE53_003377	0.60	-0.6
3,799,874	-		ABIE53_003377	0.60	+1.5
3,799,874	-		ABIE53_003377	0.60	+0.7
3,799,898	+		ABIE53_003377	0.65	+0.7
3,799,940	+		ABIE53_003377	0.73	-1.6
3,799,953	+		ABIE53_003377	0.75	-0.1
3,800,076	+				+0.1
3,800,076	+				-0.3
3,800,077	-				-1.3
3,800,077	-				+0.4
3,800,077	-				-0.4
3,800,077	-				+0.9
3,800,077	-				-0.7
3,800,077	-				+0.1
3,800,077	-				-0.4
3,800,077	-				-1.1
3,800,234	+		ABIE53_003378	0.18	+1.7
3,800,234	+		ABIE53_003378	0.18	-0.5
3,800,235	-		ABIE53_003378	0.18	-0.5
3,800,235	-		ABIE53_003378	0.18	+0.7
3,800,246	+		ABIE53_003378	0.20	+0.4
3,800,247	-		ABIE53_003378	0.20	+0.9
3,800,267	+		ABIE53_003378	0.24	-1.1
3,800,267	+		ABIE53_003378	0.24	-0.2
3,800,267	+		ABIE53_003378	0.24	+0.6
3,800,267	+		ABIE53_003378	0.24	+1.9
3,800,267	+		ABIE53_003378	0.24	+0.1
3,800,268	-		ABIE53_003378	0.24	+0.2
3,800,268	-		ABIE53_003378	0.24	+0.7
3,800,269	+		ABIE53_003378	0.25	+0.1
3,800,269	+		ABIE53_003378	0.25	+1.7
3,800,269	+		ABIE53_003378	0.25	+0.9
3,800,269	+		ABIE53_003378	0.25	+1.4
3,800,269	+		ABIE53_003378	0.25	+1.1
3,800,269	+		ABIE53_003378	0.25	+0.3
3,800,269	+		ABIE53_003378	0.25	+0.7
3,800,269	+		ABIE53_003378	0.25	+2.1
3,800,269	+		ABIE53_003378	0.25	+0.1
3,800,269	+		ABIE53_003378	0.25	+0.9
3,800,270	-		ABIE53_003378	0.25	+0.5
3,800,270	-		ABIE53_003378	0.25	-0.9
3,800,270	-		ABIE53_003378	0.25	+0.4
3,800,270	-		ABIE53_003378	0.25	+1.0
3,800,296	+		ABIE53_003378	0.30	+0.8
3,800,296	+		ABIE53_003378	0.30	+0.5
3,800,296	+		ABIE53_003378	0.30	+1.7
3,800,296	+		ABIE53_003378	0.30	+2.0
3,800,296	+		ABIE53_003378	0.30	-0.6
3,800,332	+		ABIE53_003378	0.37	+2.0
3,800,332	+		ABIE53_003378	0.37	+0.9
3,800,332	+		ABIE53_003378	0.37	+0.6
3,800,332	+		ABIE53_003378	0.37	-0.5
3,800,332	+		ABIE53_003378	0.37	+1.2
3,800,332	+		ABIE53_003378	0.37	+2.1
3,800,333	-		ABIE53_003378	0.37	+0.7
3,800,333	-		ABIE53_003378	0.37	+0.7
3,800,333	-		ABIE53_003378	0.37	+1.0
3,800,333	-		ABIE53_003378	0.37	+1.7
3,800,333	-		ABIE53_003378	0.37	+1.2
3,800,495	-		ABIE53_003378	0.68	+1.5
3,800,495	-		ABIE53_003378	0.68	+1.1
3,800,495	-		ABIE53_003378	0.68	+1.7
3,800,495	-		ABIE53_003378	0.68	-0.4
3,800,523	+		ABIE53_003378	0.74	-1.1
3,800,523	+		ABIE53_003378	0.74	+1.2
3,800,621	+				+1.1
3,800,657	+				+1.1
3,800,658	-				+0.4
3,800,679	+				+1.4
3,800,679	+				-0.1
3,800,679	+				+0.6
3,800,689	+				+1.0
3,800,690	-				-3.6
3,800,709	-				+1.2
3,800,751	+				-0.6
3,800,751	+				-1.0
3,800,751	+				+2.7
3,800,751	+				-0.8
3,800,751	+				-0.3
3,800,751	+				+2.7
3,800,751	+				-1.6
3,800,751	+				+0.5
3,800,752	-				-1.1
3,800,752	-				-1.3
3,800,752	-				-1.5
3,800,752	-				-0.9
3,800,752	-				+0.1
3,800,761	+				+0.5
3,800,763	+				+0.2
3,800,763	+				-1.5
3,800,763	+				-1.5
3,800,764	-				-0.9
3,800,764	-				-1.5
3,800,764	-				-0.6
3,800,764	-				-2.2
3,800,764	-				-0.6
3,800,931	-		ABIE53_003379	0.23	-0.7
3,800,962	-		ABIE53_003379	0.27	-0.6
3,800,962	-		ABIE53_003379	0.27	+2.7
3,800,962	-		ABIE53_003379	0.27	+0.4
3,800,962	-		ABIE53_003379	0.27	+0.7
3,801,006	+		ABIE53_003379	0.34	-0.8
3,801,007	-		ABIE53_003379	0.34	-0.2
3,801,106	+		ABIE53_003379	0.50	+0.1
3,801,107	-		ABIE53_003379	0.50	-0.6
3,801,107	-		ABIE53_003379	0.50	-0.5
3,801,107	-		ABIE53_003379	0.50	-3.6
3,801,107	-		ABIE53_003379	0.50	-0.1
3,801,117	+		ABIE53_003379	0.52	-0.1
3,801,117	+		ABIE53_003379	0.52	-0.9
3,801,117	+		ABIE53_003379	0.52	+1.7
3,801,117	+		ABIE53_003379	0.52	-0.6
3,801,118	-		ABIE53_003379	0.52	-0.3
3,801,118	-		ABIE53_003379	0.52	-1.1
3,801,118	-		ABIE53_003379	0.52	+0.1
3,801,118	-		ABIE53_003379	0.52	+1.7
3,801,118	-		ABIE53_003379	0.52	+0.1
3,801,272	+		ABIE53_003379	0.76	+0.1
3,801,272	+		ABIE53_003379	0.76	+1.8
3,801,273	-		ABIE53_003379	0.76	+0.1
3,801,273	-		ABIE53_003379	0.76	-0.9
3,801,337	-		ABIE53_003379	0.86	-0.8
3,801,337	-		ABIE53_003379	0.86	-0.1
3,801,440	+				-0.1
3,801,548	+				+0.1
3,801,548	+				+0.7
3,801,548	+				-0.0
3,801,548	+				+0.9
3,801,548	+				-0.5
3,801,549	-				-0.4
3,801,549	-				-0.1
3,801,549	-				-1.7
3,801,549	-				+1.7
3,801,552	+				-0.8
3,801,552	+				-1.5
3,801,552	+				+0.7
3,801,552	+				-1.6
3,801,552	+				+0.1
3,801,552	+				-1.3
3,801,552	+				-1.1
3,801,552	+				+0.1
3,801,552	+				+1.1
3,801,552	+				-0.6
3,801,553	-				+1.1
3,801,553	-				-0.2
3,801,553	-				-1.4
3,801,553	-				-0.2
3,801,553	-				+0.7
3,801,553	-				-1.6
3,801,553	-				-2.6
3,801,553	-				-1.6