Experiment: D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000676 and ABIE53_000677 are separated by 54 nucleotides ABIE53_000677 and ABIE53_000678 are separated by 151 nucleotides ABIE53_000678 and ABIE53_000679 are separated by 190 nucleotides ABIE53_000679 and ABIE53_000680 are separated by 111 nucleotides
ABIE53_000676: ABIE53_000676 - cytochrome c oxidase assembly protein subunit 11, at 733,227 to 733,841
_000676
ABIE53_000677: ABIE53_000677 - hypothetical protein, at 733,896 to 734,105
_000677
ABIE53_000678: ABIE53_000678 - cytochrome c oxidase subunit 3, at 734,257 to 735,114
_000678
ABIE53_000679: ABIE53_000679 - putative PurR-regulated permease PerM, at 735,305 to 735,514
_000679
ABIE53_000680: ABIE53_000680 - surfeit locus 1 family protein, at 735,626 to 736,342
_000680
Position (kb) 734
735
736 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 733.265 kb on + strand at 733.265 kb on + strand at 733.265 kb on + strand at 733.265 kb on + strand at 733.341 kb on + strand, within ABIE53_000676 at 733.341 kb on + strand, within ABIE53_000676 at 733.341 kb on + strand, within ABIE53_000676 at 733.341 kb on + strand, within ABIE53_000676 at 733.341 kb on + strand, within ABIE53_000676 at 733.341 kb on + strand, within ABIE53_000676 at 733.341 kb on + strand, within ABIE53_000676 at 733.342 kb on - strand, within ABIE53_000676 at 733.539 kb on + strand, within ABIE53_000676 at 733.539 kb on + strand, within ABIE53_000676 at 733.539 kb on + strand, within ABIE53_000676 at 733.539 kb on + strand, within ABIE53_000676 at 733.539 kb on + strand, within ABIE53_000676 at 733.539 kb on + strand, within ABIE53_000676 at 733.539 kb on + strand, within ABIE53_000676 at 733.539 kb on + strand, within ABIE53_000676 at 733.540 kb on - strand, within ABIE53_000676 at 733.540 kb on - strand, within ABIE53_000676 at 733.594 kb on - strand, within ABIE53_000676 at 733.594 kb on - strand, within ABIE53_000676 at 733.617 kb on + strand, within ABIE53_000676 at 733.617 kb on + strand, within ABIE53_000676 at 733.617 kb on + strand, within ABIE53_000676 at 733.618 kb on - strand, within ABIE53_000676 at 733.647 kb on - strand, within ABIE53_000676 at 733.647 kb on - strand, within ABIE53_000676 at 733.746 kb on + strand, within ABIE53_000676 at 733.845 kb on + strand at 733.845 kb on + strand at 733.846 kb on - strand at 733.846 kb on - strand at 733.846 kb on - strand at 733.904 kb on + strand at 733.904 kb on + strand at 734.172 kb on + strand at 734.210 kb on + strand at 734.210 kb on + strand at 734.210 kb on + strand at 734.284 kb on + strand at 734.424 kb on + strand, within ABIE53_000678 at 734.425 kb on - strand, within ABIE53_000678 at 734.425 kb on - strand, within ABIE53_000678 at 734.425 kb on - strand, within ABIE53_000678 at 734.425 kb on - strand, within ABIE53_000678 at 734.425 kb on - strand, within ABIE53_000678 at 734.476 kb on + strand, within ABIE53_000678 at 734.477 kb on - strand, within ABIE53_000678 at 734.477 kb on - strand, within ABIE53_000678 at 734.477 kb on - strand, within ABIE53_000678 at 734.477 kb on - strand, within ABIE53_000678 at 734.477 kb on - strand, within ABIE53_000678 at 734.501 kb on - strand, within ABIE53_000678 at 734.572 kb on + strand, within ABIE53_000678 at 734.572 kb on + strand, within ABIE53_000678 at 734.615 kb on - strand, within ABIE53_000678 at 734.721 kb on + strand, within ABIE53_000678 at 734.875 kb on + strand, within ABIE53_000678 at 734.875 kb on + strand, within ABIE53_000678 at 734.876 kb on - strand, within ABIE53_000678 at 734.876 kb on - strand, within ABIE53_000678 at 734.911 kb on + strand, within ABIE53_000678 at 734.911 kb on + strand, within ABIE53_000678 at 734.912 kb on - strand, within ABIE53_000678 at 735.055 kb on + strand at 735.056 kb on - strand at 735.091 kb on + strand at 735.091 kb on + strand at 735.091 kb on + strand at 735.091 kb on + strand at 735.091 kb on + strand at 735.092 kb on - strand at 735.092 kb on - strand at 735.092 kb on - strand at 735.092 kb on - strand at 735.092 kb on - strand at 735.103 kb on + strand at 735.104 kb on - strand at 735.104 kb on - strand at 735.112 kb on + strand at 735.113 kb on - strand at 735.113 kb on - strand at 735.198 kb on + strand at 735.198 kb on + strand at 735.198 kb on + strand at 735.198 kb on + strand at 735.199 kb on - strand at 735.199 kb on - strand at 735.199 kb on - strand at 735.199 kb on - strand at 735.199 kb on - strand at 735.212 kb on + strand at 735.212 kb on + strand at 735.212 kb on + strand at 735.229 kb on - strand at 735.279 kb on + strand at 735.280 kb on - strand at 735.287 kb on + strand at 735.288 kb on - strand at 735.288 kb on - strand at 735.351 kb on + strand, within ABIE53_000679 at 735.351 kb on + strand, within ABIE53_000679 at 735.352 kb on - strand, within ABIE53_000679 at 735.386 kb on + strand, within ABIE53_000679 at 735.386 kb on + strand, within ABIE53_000679 at 735.454 kb on - strand, within ABIE53_000679 at 735.454 kb on - strand, within ABIE53_000679 at 735.554 kb on + strand at 735.554 kb on + strand at 735.554 kb on + strand at 735.554 kb on + strand at 735.554 kb on + strand at 735.555 kb on - strand at 735.555 kb on - strand at 735.555 kb on - strand at 735.555 kb on - strand at 735.557 kb on + strand at 735.557 kb on + strand at 735.557 kb on + strand at 735.557 kb on + strand at 735.557 kb on + strand at 735.558 kb on - strand at 735.618 kb on + strand at 735.619 kb on - strand at 735.619 kb on - strand at 735.679 kb on + strand at 735.679 kb on + strand at 735.679 kb on + strand at 735.680 kb on - strand at 735.857 kb on + strand, within ABIE53_000680 at 735.858 kb on - strand, within ABIE53_000680 at 735.858 kb on - strand, within ABIE53_000680 at 735.875 kb on + strand, within ABIE53_000680 at 735.875 kb on + strand, within ABIE53_000680 at 735.875 kb on + strand, within ABIE53_000680 at 735.876 kb on - strand, within ABIE53_000680 at 735.877 kb on + strand, within ABIE53_000680 at 735.877 kb on + strand, within ABIE53_000680 at 735.877 kb on + strand, within ABIE53_000680 at 735.878 kb on - strand, within ABIE53_000680 at 735.878 kb on - strand, within ABIE53_000680 at 735.878 kb on - strand, within ABIE53_000680 at 735.896 kb on + strand, within ABIE53_000680 at 735.896 kb on + strand, within ABIE53_000680 at 735.896 kb on + strand, within ABIE53_000680 at 735.897 kb on - strand, within ABIE53_000680 at 735.897 kb on - strand, within ABIE53_000680 at 735.897 kb on - strand, within ABIE53_000680 at 735.913 kb on + strand, within ABIE53_000680 at 735.913 kb on + strand, within ABIE53_000680 at 735.913 kb on + strand, within ABIE53_000680 at 735.932 kb on + strand, within ABIE53_000680 at 735.932 kb on + strand, within ABIE53_000680 at 735.932 kb on + strand, within ABIE53_000680 at 735.932 kb on + strand, within ABIE53_000680 at 735.932 kb on + strand, within ABIE53_000680 at 735.932 kb on + strand, within ABIE53_000680 at 735.933 kb on - strand, within ABIE53_000680 at 735.933 kb on - strand, within ABIE53_000680 at 735.967 kb on + strand, within ABIE53_000680 at 735.967 kb on + strand, within ABIE53_000680 at 735.967 kb on + strand, within ABIE53_000680 at 735.967 kb on + strand, within ABIE53_000680 at 735.967 kb on + strand, within ABIE53_000680 at 735.967 kb on + strand, within ABIE53_000680 at 735.968 kb on - strand, within ABIE53_000680 at 735.968 kb on - strand, within ABIE53_000680 at 735.968 kb on - strand, within ABIE53_000680 at 736.032 kb on + strand, within ABIE53_000680 at 736.033 kb on - strand, within ABIE53_000680 at 736.059 kb on - strand, within ABIE53_000680 at 736.059 kb on - strand, within ABIE53_000680 at 736.059 kb on - strand, within ABIE53_000680
Per-strain Table
Position Strand Gene LocusTag Fraction D-Ribose (C) remove 733,265 + -0.4 733,265 + -2.5 733,265 + -0.5 733,265 + +0.0 733,341 + ABIE53_000676 0.19 -0.1 733,341 + ABIE53_000676 0.19 -1.8 733,341 + ABIE53_000676 0.19 -0.5 733,341 + ABIE53_000676 0.19 +1.0 733,341 + ABIE53_000676 0.19 +0.6 733,341 + ABIE53_000676 0.19 +0.6 733,341 + ABIE53_000676 0.19 -0.7 733,342 - ABIE53_000676 0.19 -1.4 733,539 + ABIE53_000676 0.51 +1.0 733,539 + ABIE53_000676 0.51 -0.8 733,539 + ABIE53_000676 0.51 -0.1 733,539 + ABIE53_000676 0.51 +0.8 733,539 + ABIE53_000676 0.51 +0.4 733,539 + ABIE53_000676 0.51 -1.2 733,539 + ABIE53_000676 0.51 -0.4 733,539 + ABIE53_000676 0.51 +0.0 733,540 - ABIE53_000676 0.51 -0.4 733,540 - ABIE53_000676 0.51 -1.8 733,594 - ABIE53_000676 0.60 +1.3 733,594 - ABIE53_000676 0.60 -3.1 733,617 + ABIE53_000676 0.63 +0.0 733,617 + ABIE53_000676 0.63 -0.2 733,617 + ABIE53_000676 0.63 -0.5 733,618 - ABIE53_000676 0.64 -1.8 733,647 - ABIE53_000676 0.68 -1.4 733,647 - ABIE53_000676 0.68 -1.8 733,746 + ABIE53_000676 0.84 +1.6 733,845 + +0.6 733,845 + +1.6 733,846 - -1.5 733,846 - -1.4 733,846 - -0.7 733,904 + +0.2 733,904 + -0.3 734,172 + +0.9 734,210 + -2.4 734,210 + -0.4 734,210 + -0.4 734,284 + +0.6 734,424 + ABIE53_000678 0.19 -0.7 734,425 - ABIE53_000678 0.20 -2.1 734,425 - ABIE53_000678 0.20 -1.4 734,425 - ABIE53_000678 0.20 -1.3 734,425 - ABIE53_000678 0.20 -0.2 734,425 - ABIE53_000678 0.20 -0.7 734,476 + ABIE53_000678 0.26 -2.4 734,477 - ABIE53_000678 0.26 -0.8 734,477 - ABIE53_000678 0.26 +0.0 734,477 - ABIE53_000678 0.26 -2.0 734,477 - ABIE53_000678 0.26 +1.6 734,477 - ABIE53_000678 0.26 +1.6 734,501 - ABIE53_000678 0.28 -1.0 734,572 + ABIE53_000678 0.37 -1.8 734,572 + ABIE53_000678 0.37 -3.5 734,615 - ABIE53_000678 0.42 -1.8 734,721 + ABIE53_000678 0.54 -2.7 734,875 + ABIE53_000678 0.72 -2.0 734,875 + ABIE53_000678 0.72 -2.3 734,876 - ABIE53_000678 0.72 -1.0 734,876 - ABIE53_000678 0.72 -1.4 734,911 + ABIE53_000678 0.76 -2.8 734,911 + ABIE53_000678 0.76 -1.1 734,912 - ABIE53_000678 0.76 -1.2 735,055 + -1.4 735,056 - -0.8 735,091 + +1.6 735,091 + -2.0 735,091 + -1.1 735,091 + -1.1 735,091 + -2.7 735,092 - -0.1 735,092 - -1.9 735,092 - -0.4 735,092 - -0.5 735,092 - -1.4 735,103 + +1.2 735,104 - -1.1 735,104 - -0.5 735,112 + +0.0 735,113 - +0.8 735,113 - -1.3 735,198 + +0.9 735,198 + +0.3 735,198 + +0.4 735,198 + -0.4 735,199 - -0.1 735,199 - -2.2 735,199 - +0.6 735,199 - +0.5 735,199 - -0.5 735,212 + +0.3 735,212 + +0.6 735,212 + -1.4 735,229 - -1.0 735,279 + -0.2 735,280 - -0.4 735,287 + -0.5 735,288 - -1.0 735,288 - -0.3 735,351 + ABIE53_000679 0.22 +0.6 735,351 + ABIE53_000679 0.22 +1.6 735,352 - ABIE53_000679 0.22 -0.2 735,386 + ABIE53_000679 0.39 -2.6 735,386 + ABIE53_000679 0.39 -0.3 735,454 - ABIE53_000679 0.71 -2.3 735,454 - ABIE53_000679 0.71 -0.5 735,554 + -1.7 735,554 + +0.8 735,554 + -0.2 735,554 + -0.7 735,554 + +0.0 735,555 - +0.3 735,555 - -0.7 735,555 - -1.0 735,555 - +0.3 735,557 + +0.2 735,557 + -0.6 735,557 + -0.4 735,557 + -0.8 735,557 + +0.1 735,558 - -1.3 735,618 + -0.5 735,619 - +1.6 735,619 - -0.5 735,679 + +0.4 735,679 + +0.6 735,679 + -1.5 735,680 - -0.0 735,857 + ABIE53_000680 0.32 -2.1 735,858 - ABIE53_000680 0.32 -1.4 735,858 - ABIE53_000680 0.32 -0.4 735,875 + ABIE53_000680 0.35 -1.3 735,875 + ABIE53_000680 0.35 -1.7 735,875 + ABIE53_000680 0.35 -1.1 735,876 - ABIE53_000680 0.35 -0.9 735,877 + ABIE53_000680 0.35 -0.4 735,877 + ABIE53_000680 0.35 -0.1 735,877 + ABIE53_000680 0.35 +0.1 735,878 - ABIE53_000680 0.35 -1.5 735,878 - ABIE53_000680 0.35 +0.6 735,878 - ABIE53_000680 0.35 +1.6 735,896 + ABIE53_000680 0.38 +1.6 735,896 + ABIE53_000680 0.38 -1.3 735,896 + ABIE53_000680 0.38 -1.0 735,897 - ABIE53_000680 0.38 +0.2 735,897 - ABIE53_000680 0.38 -0.2 735,897 - ABIE53_000680 0.38 -0.7 735,913 + ABIE53_000680 0.40 +1.4 735,913 + ABIE53_000680 0.40 -0.6 735,913 + ABIE53_000680 0.40 -2.4 735,932 + ABIE53_000680 0.43 -1.5 735,932 + ABIE53_000680 0.43 -1.1 735,932 + ABIE53_000680 0.43 +0.2 735,932 + ABIE53_000680 0.43 -1.8 735,932 + ABIE53_000680 0.43 -0.5 735,932 + ABIE53_000680 0.43 -0.7 735,933 - ABIE53_000680 0.43 -1.0 735,933 - ABIE53_000680 0.43 -1.8 735,967 + ABIE53_000680 0.48 -1.1 735,967 + ABIE53_000680 0.48 -0.1 735,967 + ABIE53_000680 0.48 +1.8 735,967 + ABIE53_000680 0.48 +0.0 735,967 + ABIE53_000680 0.48 -0.4 735,967 + ABIE53_000680 0.48 +0.1 735,968 - ABIE53_000680 0.48 -2.3 735,968 - ABIE53_000680 0.48 +0.0 735,968 - ABIE53_000680 0.48 -0.7 736,032 + ABIE53_000680 0.57 -0.2 736,033 - ABIE53_000680 0.57 -2.4 736,059 - ABIE53_000680 0.60 +0.0 736,059 - ABIE53_000680 0.60 -0.5 736,059 - ABIE53_000680 0.60 -1.5
Or see this region's nucleotide sequence