Experiment: D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000664 and ABIE53_000665 overlap by 4 nucleotides ABIE53_000665 and ABIE53_000666 are separated by 154 nucleotides ABIE53_000666 and ABIE53_000667 are separated by 21 nucleotides ABIE53_000667 and ABIE53_000668 are separated by 140 nucleotides ABIE53_000668 and ABIE53_000669 overlap by 28 nucleotides
ABIE53_000664: ABIE53_000664 - rhodanese-related sulfurtransferase, at 723,387 to 723,860
_000664
ABIE53_000665: ABIE53_000665 - glutaredoxin 3, at 723,857 to 724,117
_000665
ABIE53_000666: ABIE53_000666 - preprotein translocase subunit SecB, at 724,272 to 724,742
_000666
ABIE53_000667: ABIE53_000667 - glycerol-3-phosphate dehydrogenase (NAD(P)+), at 724,764 to 725,762
_000667
ABIE53_000668: ABIE53_000668 - O-acetyl-ADP-ribose deacetylase (regulator of RNase III), at 725,903 to 726,451
_000668
ABIE53_000669: ABIE53_000669 - tRNA (cytidine/uridine-2'-O-)-methyltransferase, at 726,424 to 726,894
_000669
Position (kb) 724
725
726 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 723.774 kb on + strand, within ABIE53_000664 at 723.774 kb on + strand, within ABIE53_000664 at 723.774 kb on + strand, within ABIE53_000664 at 723.775 kb on - strand, within ABIE53_000664 at 723.850 kb on + strand at 723.850 kb on + strand at 723.850 kb on + strand at 723.851 kb on - strand at 723.851 kb on - strand at 723.875 kb on + strand at 723.875 kb on + strand at 723.875 kb on + strand at 723.875 kb on + strand at 723.875 kb on + strand at 723.875 kb on + strand at 723.875 kb on + strand at 723.875 kb on + strand at 723.875 kb on + strand at 723.875 kb on + strand at 723.875 kb on + strand at 723.875 kb on + strand at 723.875 kb on + strand at 723.875 kb on + strand at 723.875 kb on + strand at 723.875 kb on + strand at 723.875 kb on + strand at 723.875 kb on + strand at 723.876 kb on - strand at 723.876 kb on - strand at 723.876 kb on - strand at 723.876 kb on - strand at 723.876 kb on - strand at 723.876 kb on - strand at 723.876 kb on - strand at 723.876 kb on - strand at 723.876 kb on - strand at 723.876 kb on - strand at 723.876 kb on - strand at 723.876 kb on - strand at 723.876 kb on - strand at 723.876 kb on - strand at 723.876 kb on - strand at 723.876 kb on - strand at 723.876 kb on - strand at 723.896 kb on + strand, within ABIE53_000665 at 723.896 kb on + strand, within ABIE53_000665 at 723.897 kb on - strand, within ABIE53_000665 at 723.921 kb on + strand, within ABIE53_000665 at 723.922 kb on - strand, within ABIE53_000665 at 723.922 kb on - strand, within ABIE53_000665 at 723.922 kb on - strand, within ABIE53_000665 at 723.922 kb on - strand, within ABIE53_000665 at 723.943 kb on + strand, within ABIE53_000665 at 723.954 kb on + strand, within ABIE53_000665 at 723.954 kb on + strand, within ABIE53_000665 at 723.954 kb on + strand, within ABIE53_000665 at 724.208 kb on + strand at 724.208 kb on + strand at 724.208 kb on + strand at 724.208 kb on + strand at 724.208 kb on + strand at 724.208 kb on + strand at 724.208 kb on + strand at 724.208 kb on + strand at 724.208 kb on + strand at 724.208 kb on + strand at 724.208 kb on + strand at 724.209 kb on - strand at 724.209 kb on - strand at 724.209 kb on - strand at 724.209 kb on - strand at 724.242 kb on + strand at 724.248 kb on + strand at 724.248 kb on + strand at 724.248 kb on + strand at 724.248 kb on + strand at 724.248 kb on + strand at 724.248 kb on + strand at 724.248 kb on + strand at 724.248 kb on + strand at 724.248 kb on + strand at 724.248 kb on + strand at 724.248 kb on + strand at 724.248 kb on + strand at 724.248 kb on + strand at 724.248 kb on + strand at 724.248 kb on + strand at 724.248 kb on + strand at 724.249 kb on - strand at 724.249 kb on - strand at 724.249 kb on - strand at 724.249 kb on - strand at 724.249 kb on - strand at 724.249 kb on - strand at 724.249 kb on - strand at 724.249 kb on - strand at 724.249 kb on - strand at 724.249 kb on - strand at 724.249 kb on - strand at 724.252 kb on + strand at 724.252 kb on + strand at 724.252 kb on + strand at 724.252 kb on + strand at 724.252 kb on + strand at 724.252 kb on + strand at 724.252 kb on + strand at 724.252 kb on + strand at 724.252 kb on + strand at 724.252 kb on + strand at 724.252 kb on + strand at 724.252 kb on + strand at 724.253 kb on - strand at 724.253 kb on - strand at 724.253 kb on - strand at 724.253 kb on - strand at 724.317 kb on + strand at 724.317 kb on + strand at 724.317 kb on + strand at 724.317 kb on + strand at 724.317 kb on + strand at 724.317 kb on + strand at 724.317 kb on + strand at 724.317 kb on + strand at 724.317 kb on + strand at 724.318 kb on - strand at 724.318 kb on - strand at 724.318 kb on - strand at 724.318 kb on - strand at 724.318 kb on - strand at 724.318 kb on - strand at 724.318 kb on - strand at 724.376 kb on + strand, within ABIE53_000666 at 724.532 kb on + strand, within ABIE53_000666 at 724.532 kb on + strand, within ABIE53_000666 at 724.593 kb on + strand, within ABIE53_000666 at 724.594 kb on - strand, within ABIE53_000666 at 724.678 kb on - strand, within ABIE53_000666 at 724.678 kb on - strand, within ABIE53_000666 at 724.678 kb on - strand, within ABIE53_000666 at 724.678 kb on - strand, within ABIE53_000666 at 724.678 kb on - strand, within ABIE53_000666 at 724.678 kb on - strand, within ABIE53_000666 at 724.740 kb on + strand at 724.740 kb on + strand at 724.740 kb on + strand at 724.740 kb on + strand at 724.740 kb on + strand at 724.740 kb on + strand at 724.740 kb on + strand at 724.740 kb on + strand at 724.740 kb on + strand at 724.740 kb on + strand at 724.740 kb on + strand at 724.741 kb on - strand at 724.741 kb on - strand at 724.741 kb on - strand at 724.741 kb on - strand at 724.741 kb on - strand at 724.741 kb on - strand at 724.741 kb on - strand at 724.902 kb on + strand, within ABIE53_000667 at 724.902 kb on + strand, within ABIE53_000667 at 724.902 kb on + strand, within ABIE53_000667 at 724.903 kb on - strand, within ABIE53_000667 at 724.990 kb on + strand, within ABIE53_000667 at 724.990 kb on + strand, within ABIE53_000667 at 724.990 kb on + strand, within ABIE53_000667 at 724.991 kb on - strand, within ABIE53_000667 at 724.991 kb on - strand, within ABIE53_000667 at 725.223 kb on - strand, within ABIE53_000667 at 725.223 kb on - strand, within ABIE53_000667 at 725.292 kb on + strand, within ABIE53_000667 at 725.292 kb on + strand, within ABIE53_000667 at 725.292 kb on + strand, within ABIE53_000667 at 725.292 kb on + strand, within ABIE53_000667 at 725.293 kb on - strand, within ABIE53_000667 at 725.293 kb on - strand, within ABIE53_000667 at 725.293 kb on - strand, within ABIE53_000667 at 725.293 kb on - strand, within ABIE53_000667 at 725.293 kb on - strand, within ABIE53_000667 at 725.293 kb on - strand, within ABIE53_000667 at 725.295 kb on - strand, within ABIE53_000667 at 725.295 kb on - strand, within ABIE53_000667 at 725.324 kb on - strand, within ABIE53_000667 at 725.324 kb on - strand, within ABIE53_000667 at 725.324 kb on - strand, within ABIE53_000667 at 725.760 kb on + strand at 725.761 kb on - strand at 725.761 kb on - strand at 725.761 kb on - strand at 725.770 kb on + strand at 725.770 kb on + strand at 725.771 kb on - strand at 725.771 kb on - strand at 725.771 kb on - strand at 725.771 kb on - strand at 725.771 kb on - strand at 725.832 kb on + strand at 725.832 kb on + strand at 725.832 kb on + strand at 725.832 kb on + strand at 725.833 kb on - strand at 725.875 kb on - strand at 725.911 kb on + strand at 725.911 kb on + strand at 725.912 kb on - strand at 725.989 kb on + strand, within ABIE53_000668 at 725.989 kb on + strand, within ABIE53_000668 at 725.989 kb on + strand, within ABIE53_000668 at 725.989 kb on + strand, within ABIE53_000668 at 725.989 kb on + strand, within ABIE53_000668 at 725.989 kb on + strand, within ABIE53_000668 at 725.990 kb on - strand, within ABIE53_000668 at 725.990 kb on - strand, within ABIE53_000668 at 725.990 kb on - strand, within ABIE53_000668 at 725.990 kb on - strand, within ABIE53_000668 at 725.990 kb on - strand, within ABIE53_000668 at 725.990 kb on - strand, within ABIE53_000668 at 725.990 kb on - strand, within ABIE53_000668 at 726.131 kb on + strand, within ABIE53_000668 at 726.131 kb on + strand, within ABIE53_000668 at 726.131 kb on + strand, within ABIE53_000668 at 726.132 kb on - strand, within ABIE53_000668 at 726.132 kb on - strand, within ABIE53_000668 at 726.132 kb on - strand, within ABIE53_000668 at 726.132 kb on - strand, within ABIE53_000668 at 726.132 kb on - strand, within ABIE53_000668 at 726.132 kb on - strand, within ABIE53_000668 at 726.132 kb on - strand, within ABIE53_000668 at 726.132 kb on - strand, within ABIE53_000668 at 726.157 kb on - strand, within ABIE53_000668 at 726.203 kb on + strand, within ABIE53_000668 at 726.203 kb on + strand, within ABIE53_000668 at 726.203 kb on + strand, within ABIE53_000668 at 726.203 kb on + strand, within ABIE53_000668 at 726.203 kb on + strand, within ABIE53_000668 at 726.204 kb on - strand, within ABIE53_000668 at 726.204 kb on - strand, within ABIE53_000668 at 726.204 kb on - strand, within ABIE53_000668 at 726.278 kb on + strand, within ABIE53_000668 at 726.279 kb on - strand, within ABIE53_000668 at 726.279 kb on - strand, within ABIE53_000668 at 726.279 kb on - strand, within ABIE53_000668 at 726.279 kb on - strand, within ABIE53_000668 at 726.324 kb on + strand, within ABIE53_000668 at 726.469 kb on + strand at 726.469 kb on + strand at 726.469 kb on + strand at 726.469 kb on + strand at 726.469 kb on + strand at 726.470 kb on - strand at 726.470 kb on - strand at 726.483 kb on + strand, within ABIE53_000669 at 726.483 kb on + strand, within ABIE53_000669 at 726.483 kb on + strand, within ABIE53_000669 at 726.483 kb on + strand, within ABIE53_000669 at 726.483 kb on + strand, within ABIE53_000669 at 726.483 kb on + strand, within ABIE53_000669 at 726.483 kb on + strand, within ABIE53_000669 at 726.483 kb on + strand, within ABIE53_000669 at 726.483 kb on + strand, within ABIE53_000669 at 726.483 kb on + strand, within ABIE53_000669 at 726.483 kb on + strand, within ABIE53_000669 at 726.483 kb on + strand, within ABIE53_000669 at 726.484 kb on - strand, within ABIE53_000669 at 726.484 kb on - strand, within ABIE53_000669 at 726.484 kb on - strand, within ABIE53_000669 at 726.484 kb on - strand, within ABIE53_000669 at 726.484 kb on - strand, within ABIE53_000669 at 726.484 kb on - strand, within ABIE53_000669 at 726.484 kb on - strand, within ABIE53_000669 at 726.484 kb on - strand, within ABIE53_000669 at 726.484 kb on - strand, within ABIE53_000669 at 726.486 kb on + strand, within ABIE53_000669 at 726.486 kb on + strand, within ABIE53_000669 at 726.486 kb on + strand, within ABIE53_000669 at 726.487 kb on - strand, within ABIE53_000669 at 726.487 kb on - strand, within ABIE53_000669 at 726.734 kb on + strand, within ABIE53_000669 at 726.743 kb on + strand, within ABIE53_000669 at 726.743 kb on + strand, within ABIE53_000669 at 726.743 kb on + strand, within ABIE53_000669 at 726.744 kb on - strand, within ABIE53_000669 at 726.744 kb on - strand, within ABIE53_000669 at 726.744 kb on - strand, within ABIE53_000669
Per-strain Table
Position Strand Gene LocusTag Fraction D-Ribose (C) remove 723,774 + ABIE53_000664 0.82 -0.8 723,774 + ABIE53_000664 0.82 -1.4 723,774 + ABIE53_000664 0.82 -0.1 723,775 - ABIE53_000664 0.82 +1.2 723,850 + +0.4 723,850 + -0.4 723,850 + -1.2 723,851 - +0.1 723,851 - -0.4 723,875 + -1.2 723,875 + -0.7 723,875 + +0.6 723,875 + +0.2 723,875 + +1.2 723,875 + +0.1 723,875 + +0.6 723,875 + -0.6 723,875 + +3.0 723,875 + -0.2 723,875 + -1.9 723,875 + -0.4 723,875 + -0.5 723,875 + -0.8 723,875 + -2.1 723,875 + +0.2 723,875 + -0.4 723,875 + +0.1 723,876 - -0.4 723,876 - +3.2 723,876 - +0.5 723,876 - -0.0 723,876 - +0.2 723,876 - -1.4 723,876 - +1.4 723,876 - -0.1 723,876 - -0.1 723,876 - +0.1 723,876 - +0.1 723,876 - +0.4 723,876 - -0.2 723,876 - +1.1 723,876 - +0.4 723,876 - -1.2 723,876 - -0.6 723,896 + ABIE53_000665 0.15 -0.4 723,896 + ABIE53_000665 0.15 -0.6 723,897 - ABIE53_000665 0.15 +1.6 723,921 + ABIE53_000665 0.25 -0.5 723,922 - ABIE53_000665 0.25 -3.0 723,922 - ABIE53_000665 0.25 -2.4 723,922 - ABIE53_000665 0.25 -2.7 723,922 - ABIE53_000665 0.25 -2.2 723,943 + ABIE53_000665 0.33 -0.3 723,954 + ABIE53_000665 0.37 -1.5 723,954 + ABIE53_000665 0.37 +0.5 723,954 + ABIE53_000665 0.37 +1.0 724,208 + -0.4 724,208 + +0.5 724,208 + -2.3 724,208 + -1.8 724,208 + -1.7 724,208 + -0.8 724,208 + +0.4 724,208 + -0.3 724,208 + -1.1 724,208 + -0.3 724,208 + -1.7 724,209 - -1.9 724,209 - -3.4 724,209 - -1.5 724,209 - -3.2 724,242 + +0.2 724,248 + -1.7 724,248 + +2.2 724,248 + -0.7 724,248 + +0.6 724,248 + -0.9 724,248 + -1.3 724,248 + +0.3 724,248 + -0.2 724,248 + -0.1 724,248 + +0.2 724,248 + +0.6 724,248 + -0.1 724,248 + +0.1 724,248 + +0.6 724,248 + +0.1 724,248 + +0.4 724,249 - +0.1 724,249 - -0.2 724,249 - -1.8 724,249 - +0.1 724,249 - -1.4 724,249 - -2.5 724,249 - +0.6 724,249 - -0.9 724,249 - -3.5 724,249 - -2.9 724,249 - -0.7 724,252 + +1.6 724,252 + +0.9 724,252 + -0.4 724,252 + +0.2 724,252 + +0.2 724,252 + +1.4 724,252 + -0.2 724,252 + +0.1 724,252 + -0.8 724,252 + -0.9 724,252 + -0.5 724,252 + -0.4 724,253 - -2.2 724,253 - -1.2 724,253 - -0.9 724,253 - -2.3 724,317 + +1.6 724,317 + +0.2 724,317 + -0.3 724,317 + +1.6 724,317 + -1.5 724,317 + +0.3 724,317 + +0.2 724,317 + -0.3 724,317 + +0.8 724,318 - -1.2 724,318 - -1.9 724,318 - -0.9 724,318 - -1.4 724,318 - -2.9 724,318 - +0.1 724,318 - +0.6 724,376 + ABIE53_000666 0.22 -0.4 724,532 + ABIE53_000666 0.55 -1.5 724,532 + ABIE53_000666 0.55 -0.4 724,593 + ABIE53_000666 0.68 +0.4 724,594 - ABIE53_000666 0.68 -1.5 724,678 - ABIE53_000666 0.86 -2.1 724,678 - ABIE53_000666 0.86 -2.1 724,678 - ABIE53_000666 0.86 -1.7 724,678 - ABIE53_000666 0.86 -2.7 724,678 - ABIE53_000666 0.86 -1.6 724,678 - ABIE53_000666 0.86 +0.1 724,740 + -3.6 724,740 + -3.5 724,740 + -0.0 724,740 + -2.4 724,740 + +0.1 724,740 + +0.2 724,740 + -1.6 724,740 + -3.0 724,740 + -0.5 724,740 + +0.5 724,740 + +0.2 724,741 - -2.8 724,741 - -3.6 724,741 - -2.3 724,741 - -3.1 724,741 - -3.2 724,741 - +0.3 724,741 - -3.6 724,902 + ABIE53_000667 0.14 -3.3 724,902 + ABIE53_000667 0.14 -3.3 724,902 + ABIE53_000667 0.14 -3.7 724,903 - ABIE53_000667 0.14 -2.4 724,990 + ABIE53_000667 0.23 -2.2 724,990 + ABIE53_000667 0.23 -1.2 724,990 + ABIE53_000667 0.23 -1.2 724,991 - ABIE53_000667 0.23 -2.8 724,991 - ABIE53_000667 0.23 -4.3 725,223 - ABIE53_000667 0.46 -0.5 725,223 - ABIE53_000667 0.46 -1.8 725,292 + ABIE53_000667 0.53 -1.8 725,292 + ABIE53_000667 0.53 -2.6 725,292 + ABIE53_000667 0.53 +0.6 725,292 + ABIE53_000667 0.53 -1.5 725,293 - ABIE53_000667 0.53 -3.4 725,293 - ABIE53_000667 0.53 -5.4 725,293 - ABIE53_000667 0.53 -3.1 725,293 - ABIE53_000667 0.53 -2.4 725,293 - ABIE53_000667 0.53 +0.6 725,293 - ABIE53_000667 0.53 +0.6 725,295 - ABIE53_000667 0.53 -1.4 725,295 - ABIE53_000667 0.53 -1.7 725,324 - ABIE53_000667 0.56 -1.7 725,324 - ABIE53_000667 0.56 -2.8 725,324 - ABIE53_000667 0.56 -2.3 725,760 + -0.8 725,761 - +1.4 725,761 - -0.3 725,761 - +1.3 725,770 + +2.6 725,770 + +0.9 725,771 - +1.6 725,771 - +1.3 725,771 - -0.4 725,771 - -0.3 725,771 - -0.7 725,832 + -0.4 725,832 + -1.4 725,832 + -0.2 725,832 + -0.3 725,833 - -0.6 725,875 - -1.2 725,911 + -1.1 725,911 + +0.1 725,912 - +2.6 725,989 + ABIE53_000668 0.16 -0.6 725,989 + ABIE53_000668 0.16 -0.1 725,989 + ABIE53_000668 0.16 +2.2 725,989 + ABIE53_000668 0.16 -0.7 725,989 + ABIE53_000668 0.16 +0.6 725,989 + ABIE53_000668 0.16 -0.7 725,990 - ABIE53_000668 0.16 -0.7 725,990 - ABIE53_000668 0.16 -0.2 725,990 - ABIE53_000668 0.16 +1.6 725,990 - ABIE53_000668 0.16 -0.4 725,990 - ABIE53_000668 0.16 +0.1 725,990 - ABIE53_000668 0.16 +2.6 725,990 - ABIE53_000668 0.16 +0.1 726,131 + ABIE53_000668 0.42 -0.0 726,131 + ABIE53_000668 0.42 -0.4 726,131 + ABIE53_000668 0.42 +0.6 726,132 - ABIE53_000668 0.42 -0.3 726,132 - ABIE53_000668 0.42 +0.4 726,132 - ABIE53_000668 0.42 +0.9 726,132 - ABIE53_000668 0.42 +1.1 726,132 - ABIE53_000668 0.42 -0.4 726,132 - ABIE53_000668 0.42 -0.3 726,132 - ABIE53_000668 0.42 -0.8 726,132 - ABIE53_000668 0.42 -0.9 726,157 - ABIE53_000668 0.46 +1.1 726,203 + ABIE53_000668 0.55 +0.9 726,203 + ABIE53_000668 0.55 -0.9 726,203 + ABIE53_000668 0.55 +0.4 726,203 + ABIE53_000668 0.55 +0.7 726,203 + ABIE53_000668 0.55 -0.4 726,204 - ABIE53_000668 0.55 -1.2 726,204 - ABIE53_000668 0.55 +0.6 726,204 - ABIE53_000668 0.55 +0.1 726,278 + ABIE53_000668 0.68 +0.4 726,279 - ABIE53_000668 0.68 -0.7 726,279 - ABIE53_000668 0.68 +0.2 726,279 - ABIE53_000668 0.68 -0.5 726,279 - ABIE53_000668 0.68 -0.4 726,324 + ABIE53_000668 0.77 -0.4 726,469 + +0.1 726,469 + -1.4 726,469 + -0.4 726,469 + -0.4 726,469 + -0.1 726,470 - +0.6 726,470 - -0.9 726,483 + ABIE53_000669 0.13 +0.6 726,483 + ABIE53_000669 0.13 +1.2 726,483 + ABIE53_000669 0.13 +0.9 726,483 + ABIE53_000669 0.13 +0.2 726,483 + ABIE53_000669 0.13 -1.2 726,483 + ABIE53_000669 0.13 -0.5 726,483 + ABIE53_000669 0.13 -0.8 726,483 + ABIE53_000669 0.13 -1.5 726,483 + ABIE53_000669 0.13 -0.9 726,483 + ABIE53_000669 0.13 -0.5 726,483 + ABIE53_000669 0.13 -1.8 726,483 + ABIE53_000669 0.13 -0.4 726,484 - ABIE53_000669 0.13 +0.2 726,484 - ABIE53_000669 0.13 -0.4 726,484 - ABIE53_000669 0.13 +1.8 726,484 - ABIE53_000669 0.13 +1.2 726,484 - ABIE53_000669 0.13 -0.2 726,484 - ABIE53_000669 0.13 -0.6 726,484 - ABIE53_000669 0.13 -1.1 726,484 - ABIE53_000669 0.13 -0.4 726,484 - ABIE53_000669 0.13 +0.2 726,486 + ABIE53_000669 0.13 +0.0 726,486 + ABIE53_000669 0.13 -0.7 726,486 + ABIE53_000669 0.13 -0.7 726,487 - ABIE53_000669 0.13 +0.3 726,487 - ABIE53_000669 0.13 +1.1 726,734 + ABIE53_000669 0.66 -1.8 726,743 + ABIE53_000669 0.68 -0.5 726,743 + ABIE53_000669 0.68 -1.4 726,743 + ABIE53_000669 0.68 -0.0 726,744 - ABIE53_000669 0.68 +0.6 726,744 - ABIE53_000669 0.68 -1.2 726,744 - ABIE53_000669 0.68 -0.2
Or see this region's nucleotide sequence