Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS00350

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS00345 and ABIE51_RS00350 are separated by 6 nucleotidesABIE51_RS00350 and ABIE51_RS00355 are separated by 73 nucleotides ABIE51_RS00345: ABIE51_RS00345 - serine/threonine-protein kinase, at 73,308 to 76,136 _RS00345 ABIE51_RS00350: ABIE51_RS00350 - thymidine kinase, at 76,143 to 76,763 _RS00350 ABIE51_RS00355: ABIE51_RS00355 - methylglyoxal synthase, at 76,837 to 77,715 _RS00355 Position (kb) 76 77Strain fitness (log2 ratio) -2 -1 0 1 2at 75.306 kb on + strand, within ABIE51_RS00345at 75.307 kb on - strand, within ABIE51_RS00345at 75.307 kb on - strand, within ABIE51_RS00345at 75.362 kb on + strand, within ABIE51_RS00345at 75.363 kb on - strand, within ABIE51_RS00345at 75.832 kb on - strand, within ABIE51_RS00345at 75.990 kb on + strandat 75.991 kb on - strandat 76.049 kb on + strandat 76.049 kb on + strandat 76.050 kb on - strandat 76.050 kb on - strandat 76.050 kb on - strandat 76.204 kb on + strandat 76.205 kb on - strand, within ABIE51_RS00350at 76.205 kb on - strand, within ABIE51_RS00350at 76.228 kb on + strand, within ABIE51_RS00350at 76.228 kb on + strand, within ABIE51_RS00350at 76.229 kb on - strand, within ABIE51_RS00350at 76.229 kb on - strand, within ABIE51_RS00350at 76.229 kb on - strand, within ABIE51_RS00350at 76.229 kb on - strand, within ABIE51_RS00350at 76.229 kb on - strand, within ABIE51_RS00350at 76.229 kb on - strand, within ABIE51_RS00350at 76.372 kb on + strand, within ABIE51_RS00350at 76.372 kb on + strand, within ABIE51_RS00350at 76.372 kb on + strand, within ABIE51_RS00350at 76.372 kb on + strand, within ABIE51_RS00350at 76.372 kb on + strand, within ABIE51_RS00350at 76.373 kb on - strand, within ABIE51_RS00350at 76.421 kb on - strand, within ABIE51_RS00350at 76.687 kb on + strand, within ABIE51_RS00350at 76.687 kb on + strand, within ABIE51_RS00350at 76.688 kb on - strand, within ABIE51_RS00350at 76.688 kb on - strand, within ABIE51_RS00350at 76.688 kb on - strand, within ABIE51_RS00350at 76.741 kb on + strandat 76.741 kb on + strandat 76.744 kb on + strandat 76.744 kb on + strandat 76.744 kb on + strandat 76.744 kb on + strandat 76.744 kb on + strandat 76.745 kb on - strandat 76.745 kb on - strandat 76.745 kb on - strandat 76.745 kb on - strandat 76.750 kb on + strandat 76.750 kb on + strandat 76.751 kb on - strandat 76.751 kb on - strandat 76.774 kb on + strandat 76.775 kb on - strandat 76.795 kb on + strandat 76.796 kb on - strandat 76.796 kb on - strandat 76.796 kb on - strandat 77.201 kb on + strand, within ABIE51_RS00355at 77.201 kb on + strand, within ABIE51_RS00355at 77.441 kb on + strand, within ABIE51_RS00355at 77.441 kb on + strand, within ABIE51_RS00355at 77.441 kb on + strand, within ABIE51_RS00355at 77.441 kb on + strand, within ABIE51_RS00355at 77.441 kb on + strand, within ABIE51_RS00355at 77.441 kb on + strand, within ABIE51_RS00355at 77.441 kb on + strand, within ABIE51_RS00355at 77.441 kb on + strand, within ABIE51_RS00355at 77.442 kb on - strand, within ABIE51_RS00355at 77.442 kb on - strand, within ABIE51_RS00355at 77.549 kb on + strand, within ABIE51_RS00355at 77.748 kb on + strandat 77.749 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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75,306 + ABIE51_RS00345 0.71 +1.3
75,307 - ABIE51_RS00345 0.71 -2.1
75,307 - ABIE51_RS00345 0.71 -0.6
75,362 + ABIE51_RS00345 0.73 +0.6
75,363 - ABIE51_RS00345 0.73 -0.2
75,832 - ABIE51_RS00345 0.89 -0.5
75,990 + +0.9
75,991 - +0.8
76,049 + -0.2
76,049 + +0.1
76,050 - -0.1
76,050 - +0.4
76,050 - +0.2
76,204 + +0.5
76,205 - ABIE51_RS00350 0.10 -1.4
76,205 - ABIE51_RS00350 0.10 -0.9
76,228 + ABIE51_RS00350 0.14 +0.6
76,228 + ABIE51_RS00350 0.14 -0.9
76,229 - ABIE51_RS00350 0.14 +0.2
76,229 - ABIE51_RS00350 0.14 -0.4
76,229 - ABIE51_RS00350 0.14 +0.3
76,229 - ABIE51_RS00350 0.14 -0.5
76,229 - ABIE51_RS00350 0.14 -1.0
76,229 - ABIE51_RS00350 0.14 -0.1
76,372 + ABIE51_RS00350 0.37 -1.1
76,372 + ABIE51_RS00350 0.37 -0.7
76,372 + ABIE51_RS00350 0.37 -0.3
76,372 + ABIE51_RS00350 0.37 +1.9
76,372 + ABIE51_RS00350 0.37 +1.1
76,373 - ABIE51_RS00350 0.37 +0.1
76,421 - ABIE51_RS00350 0.45 -0.4
76,687 + ABIE51_RS00350 0.88 +0.3
76,687 + ABIE51_RS00350 0.88 +0.1
76,688 - ABIE51_RS00350 0.88 -0.2
76,688 - ABIE51_RS00350 0.88 -0.7
76,688 - ABIE51_RS00350 0.88 -0.3
76,741 + -0.7
76,741 + +2.0
76,744 + +0.1
76,744 + +0.6
76,744 + +0.8
76,744 + +1.0
76,744 + -0.1
76,745 - +0.4
76,745 - +0.2
76,745 - -0.1
76,745 - +0.1
76,750 + -0.0
76,750 + -0.5
76,751 - +0.1
76,751 - -0.7
76,774 + -0.2
76,775 - +0.7
76,795 + -1.3
76,796 - -0.7
76,796 - +0.3
76,796 - +0.4
77,201 + ABIE51_RS00355 0.41 +1.0
77,201 + ABIE51_RS00355 0.41 -0.5
77,441 + ABIE51_RS00355 0.69 -0.2
77,441 + ABIE51_RS00355 0.69 +1.9
77,441 + ABIE51_RS00355 0.69 -0.7
77,441 + ABIE51_RS00355 0.69 -0.4
77,441 + ABIE51_RS00355 0.69 -0.5
77,441 + ABIE51_RS00355 0.69 -0.7
77,441 + ABIE51_RS00355 0.69 +0.4
77,441 + ABIE51_RS00355 0.69 -0.1
77,442 - ABIE51_RS00355 0.69 +2.4
77,442 - ABIE51_RS00355 0.69 +0.8
77,549 + ABIE51_RS00355 0.81 +0.5
77,748 + -1.3
77,749 - +0.9

Or see this region's nucleotide sequence