Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanol_timecourse3; 10 generations
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02780 and MMP_RS02785 are separated by 13 nucleotides MMP_RS02785 and MMP_RS02790 are separated by 1 nucleotides MMP_RS02790 and MMP_RS02795 are separated by 424 nucleotides
MMP_RS02780: MMP_RS02780 - hypothetical protein, at 531,638 to 532,351
_RS02780
MMP_RS02785: MMP_RS02785 - MarR family transcriptional regulator, at 532,365 to 532,985
_RS02785
MMP_RS02790: MMP_RS02790 - class III signal peptide-containing protein, at 532,987 to 533,208
_RS02790
MMP_RS02795: MMP_RS02795 - sulfate permease, at 533,633 to 535,291
_RS02795
Position (kb) 532
533 Strain fitness (log2 ratio) -2
-1
0
1 at 531.445 kb on - strand at 531.463 kb on + strand at 531.465 kb on + strand at 531.525 kb on + strand at 531.525 kb on + strand at 531.525 kb on + strand at 531.526 kb on - strand at 531.527 kb on + strand at 531.529 kb on + strand at 531.529 kb on + strand at 531.531 kb on - strand at 531.531 kb on - strand at 531.531 kb on - strand at 531.532 kb on + strand at 531.584 kb on - strand at 531.591 kb on + strand at 531.604 kb on - strand at 531.605 kb on + strand at 531.605 kb on + strand at 531.605 kb on + strand at 531.605 kb on + strand at 531.613 kb on - strand at 531.623 kb on + strand at 531.733 kb on - strand, within MMP_RS02780 at 531.736 kb on + strand, within MMP_RS02780 at 531.912 kb on - strand, within MMP_RS02780 at 531.978 kb on - strand, within MMP_RS02780 at 531.979 kb on + strand, within MMP_RS02780 at 531.979 kb on + strand, within MMP_RS02780 at 531.981 kb on - strand, within MMP_RS02780 at 531.981 kb on - strand, within MMP_RS02780 at 531.982 kb on + strand, within MMP_RS02780 at 531.982 kb on + strand, within MMP_RS02780 at 531.983 kb on - strand, within MMP_RS02780 at 531.983 kb on - strand, within MMP_RS02780 at 531.983 kb on - strand, within MMP_RS02780 at 531.983 kb on - strand, within MMP_RS02780 at 531.984 kb on + strand, within MMP_RS02780 at 531.984 kb on + strand, within MMP_RS02780 at 531.987 kb on - strand, within MMP_RS02780 at 531.988 kb on + strand, within MMP_RS02780 at 531.993 kb on - strand, within MMP_RS02780 at 532.009 kb on - strand, within MMP_RS02780 at 532.049 kb on + strand, within MMP_RS02780 at 532.086 kb on + strand, within MMP_RS02780 at 532.174 kb on - strand, within MMP_RS02780 at 532.190 kb on - strand, within MMP_RS02780 at 532.191 kb on + strand, within MMP_RS02780 at 532.195 kb on - strand, within MMP_RS02780 at 532.195 kb on - strand, within MMP_RS02780 at 532.196 kb on + strand, within MMP_RS02780 at 532.197 kb on - strand, within MMP_RS02780 at 532.197 kb on - strand, within MMP_RS02780 at 532.197 kb on - strand, within MMP_RS02780 at 532.198 kb on + strand, within MMP_RS02780 at 532.198 kb on + strand, within MMP_RS02780 at 532.198 kb on + strand, within MMP_RS02780 at 532.201 kb on - strand, within MMP_RS02780 at 532.201 kb on - strand, within MMP_RS02780 at 532.250 kb on - strand, within MMP_RS02780 at 532.250 kb on - strand, within MMP_RS02780 at 532.251 kb on + strand, within MMP_RS02780 at 532.251 kb on + strand, within MMP_RS02780 at 532.286 kb on + strand at 532.286 kb on + strand at 532.289 kb on - strand at 532.345 kb on + strand at 532.349 kb on - strand at 532.384 kb on - strand at 532.392 kb on - strand at 532.392 kb on - strand at 532.392 kb on - strand at 532.392 kb on - strand at 532.393 kb on + strand at 532.393 kb on + strand at 532.394 kb on - strand at 532.403 kb on + strand at 532.420 kb on - strand at 532.486 kb on + strand, within MMP_RS02785 at 532.508 kb on + strand, within MMP_RS02785 at 532.510 kb on + strand, within MMP_RS02785 at 532.519 kb on + strand, within MMP_RS02785 at 532.541 kb on + strand, within MMP_RS02785 at 532.556 kb on + strand, within MMP_RS02785 at 532.573 kb on - strand, within MMP_RS02785 at 532.616 kb on - strand, within MMP_RS02785 at 532.828 kb on - strand, within MMP_RS02785 at 532.906 kb on - strand, within MMP_RS02785 at 532.922 kb on - strand, within MMP_RS02785 at 532.942 kb on + strand at 532.954 kb on - strand at 532.982 kb on + strand at 532.983 kb on - strand at 533.038 kb on - strand, within MMP_RS02790 at 533.225 kb on - strand at 533.248 kb on - strand at 533.249 kb on + strand at 533.253 kb on + strand at 533.253 kb on + strand at 533.253 kb on + strand at 533.272 kb on - strand at 533.273 kb on + strand at 533.274 kb on - strand at 533.274 kb on - strand at 533.274 kb on - strand at 533.274 kb on - strand at 533.274 kb on - strand at 533.274 kb on - strand at 533.275 kb on + strand at 533.275 kb on + strand at 533.275 kb on + strand at 533.275 kb on + strand at 533.275 kb on + strand at 533.275 kb on + strand at 533.275 kb on + strand at 533.276 kb on - strand at 533.276 kb on - strand at 533.276 kb on - strand at 533.276 kb on - strand at 533.276 kb on - strand at 533.276 kb on - strand at 533.277 kb on + strand at 533.277 kb on + strand at 533.303 kb on - strand at 533.303 kb on - strand at 533.324 kb on - strand at 533.500 kb on - strand at 533.560 kb on + strand at 533.598 kb on - strand at 533.598 kb on - strand at 533.599 kb on + strand at 533.616 kb on - strand at 533.634 kb on - strand at 533.634 kb on - strand at 533.634 kb on - strand at 533.708 kb on + strand at 533.932 kb on - strand, within MMP_RS02795 at 533.933 kb on + strand, within MMP_RS02795
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanol_timecourse3; 10 generations remove 531,445 - -0.1 531,463 + +0.0 531,465 + -0.2 531,525 + -0.5 531,525 + -0.2 531,525 + -0.2 531,526 - -0.3 531,527 + -0.5 531,529 + -0.7 531,529 + -0.2 531,531 - -0.4 531,531 - -0.8 531,531 - -0.1 531,532 + -1.3 531,584 - -0.5 531,591 + +0.3 531,604 - -0.1 531,605 + +0.4 531,605 + +0.1 531,605 + +0.5 531,605 + +0.7 531,613 - +0.3 531,623 + -0.7 531,733 - MMP_RS02780 0.13 -0.1 531,736 + MMP_RS02780 0.14 -0.6 531,912 - MMP_RS02780 0.38 +0.2 531,978 - MMP_RS02780 0.48 +0.3 531,979 + MMP_RS02780 0.48 +0.3 531,979 + MMP_RS02780 0.48 +0.0 531,981 - MMP_RS02780 0.48 -0.1 531,981 - MMP_RS02780 0.48 +0.2 531,982 + MMP_RS02780 0.48 -0.6 531,982 + MMP_RS02780 0.48 +0.4 531,983 - MMP_RS02780 0.48 +0.1 531,983 - MMP_RS02780 0.48 +0.1 531,983 - MMP_RS02780 0.48 +0.2 531,983 - MMP_RS02780 0.48 +0.1 531,984 + MMP_RS02780 0.48 -0.1 531,984 + MMP_RS02780 0.48 +0.3 531,987 - MMP_RS02780 0.49 -0.4 531,988 + MMP_RS02780 0.49 +0.1 531,993 - MMP_RS02780 0.50 -0.1 532,009 - MMP_RS02780 0.52 -0.7 532,049 + MMP_RS02780 0.58 -0.5 532,086 + MMP_RS02780 0.63 +0.3 532,174 - MMP_RS02780 0.75 +0.4 532,190 - MMP_RS02780 0.77 -0.4 532,191 + MMP_RS02780 0.77 -1.2 532,195 - MMP_RS02780 0.78 -0.9 532,195 - MMP_RS02780 0.78 -2.6 532,196 + MMP_RS02780 0.78 -0.7 532,197 - MMP_RS02780 0.78 -1.4 532,197 - MMP_RS02780 0.78 -1.0 532,197 - MMP_RS02780 0.78 -0.2 532,198 + MMP_RS02780 0.78 -2.0 532,198 + MMP_RS02780 0.78 -0.3 532,198 + MMP_RS02780 0.78 -0.4 532,201 - MMP_RS02780 0.79 -0.6 532,201 - MMP_RS02780 0.79 -0.4 532,250 - MMP_RS02780 0.86 -2.3 532,250 - MMP_RS02780 0.86 -1.3 532,251 + MMP_RS02780 0.86 -0.9 532,251 + MMP_RS02780 0.86 -1.0 532,286 + -1.1 532,286 + -0.2 532,289 - -0.4 532,345 + -0.8 532,349 - -1.1 532,384 - -1.1 532,392 - -0.4 532,392 - -1.1 532,392 - -0.8 532,392 - -1.1 532,393 + -0.5 532,393 + -0.7 532,394 - -1.2 532,403 + -1.2 532,420 - -1.0 532,486 + MMP_RS02785 0.19 -0.6 532,508 + MMP_RS02785 0.23 -2.2 532,510 + MMP_RS02785 0.23 -0.8 532,519 + MMP_RS02785 0.25 -0.9 532,541 + MMP_RS02785 0.28 -1.8 532,556 + MMP_RS02785 0.31 -1.4 532,573 - MMP_RS02785 0.33 -1.4 532,616 - MMP_RS02785 0.40 -0.9 532,828 - MMP_RS02785 0.75 -0.9 532,906 - MMP_RS02785 0.87 -1.1 532,922 - MMP_RS02785 0.90 -0.4 532,942 + -0.5 532,954 - -0.7 532,982 + -0.5 532,983 - -0.0 533,038 - MMP_RS02790 0.23 +0.1 533,225 - +0.2 533,248 - +0.4 533,249 + +0.1 533,253 + +0.5 533,253 + +0.3 533,253 + +0.9 533,272 - -0.1 533,273 + -0.5 533,274 - +0.1 533,274 - +0.6 533,274 - -0.2 533,274 - -0.6 533,274 - -0.3 533,274 - +0.1 533,275 + +0.0 533,275 + +0.2 533,275 + +0.1 533,275 + +0.3 533,275 + -0.1 533,275 + +0.9 533,275 + +0.2 533,276 - -0.1 533,276 - -0.2 533,276 - +0.3 533,276 - +0.3 533,276 - +0.7 533,276 - +0.3 533,277 + +0.1 533,277 + +0.5 533,303 - +0.4 533,303 - +0.1 533,324 - -0.7 533,500 - -0.5 533,560 + +0.2 533,598 - +0.2 533,598 - +0.2 533,599 + -0.3 533,616 - +0.3 533,634 - +0.1 533,634 - +0.5 533,634 - -0.1 533,708 + -0.0 533,932 - MMP_RS02795 0.18 -0.0 533,933 + MMP_RS02795 0.18 +0.8
Or see this region's nucleotide sequence