Experiment: Formate pooled triplicate biofilm cells
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS02345 and MMJJ_RS02350 are separated by 208 nucleotides MMJJ_RS02350 and MMJJ_RS02355 are separated by 362 nucleotides
MMJJ_RS02345: MMJJ_RS02345 - ATP-binding protein, at 443,488 to 444,759
_RS02345
MMJJ_RS02350: MMJJ_RS02350 - Fic family protein, at 444,968 to 446,257
_RS02350
MMJJ_RS02355: MMJJ_RS02355 - DUF2798 domain-containing protein, at 446,620 to 447,096
_RS02355
Position (kb) 444
445
446
447 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 444.001 kb on + strand, within MMJJ_RS02345 at 444.001 kb on + strand, within MMJJ_RS02345 at 444.007 kb on + strand, within MMJJ_RS02345 at 444.030 kb on - strand, within MMJJ_RS02345 at 444.059 kb on + strand, within MMJJ_RS02345 at 444.059 kb on + strand, within MMJJ_RS02345 at 444.073 kb on - strand, within MMJJ_RS02345 at 444.104 kb on - strand, within MMJJ_RS02345 at 444.105 kb on + strand, within MMJJ_RS02345 at 444.123 kb on - strand, within MMJJ_RS02345 at 444.125 kb on - strand, within MMJJ_RS02345 at 444.126 kb on + strand, within MMJJ_RS02345 at 444.135 kb on - strand, within MMJJ_RS02345 at 444.143 kb on - strand, within MMJJ_RS02345 at 444.209 kb on + strand, within MMJJ_RS02345 at 444.225 kb on - strand, within MMJJ_RS02345 at 444.225 kb on - strand, within MMJJ_RS02345 at 444.238 kb on + strand, within MMJJ_RS02345 at 444.238 kb on + strand, within MMJJ_RS02345 at 444.275 kb on + strand, within MMJJ_RS02345 at 444.275 kb on + strand, within MMJJ_RS02345 at 444.282 kb on - strand, within MMJJ_RS02345 at 444.293 kb on - strand, within MMJJ_RS02345 at 444.317 kb on + strand, within MMJJ_RS02345 at 444.328 kb on - strand, within MMJJ_RS02345 at 444.328 kb on - strand, within MMJJ_RS02345 at 444.329 kb on + strand, within MMJJ_RS02345 at 444.402 kb on - strand, within MMJJ_RS02345 at 444.433 kb on + strand, within MMJJ_RS02345 at 444.490 kb on + strand, within MMJJ_RS02345 at 444.517 kb on - strand, within MMJJ_RS02345 at 444.554 kb on + strand, within MMJJ_RS02345 at 444.682 kb on - strand at 444.682 kb on - strand at 444.683 kb on + strand at 444.697 kb on - strand at 444.704 kb on + strand at 444.704 kb on + strand at 444.719 kb on - strand at 444.726 kb on - strand at 444.837 kb on + strand at 444.873 kb on - strand at 444.873 kb on - strand at 444.878 kb on - strand at 444.899 kb on - strand at 444.918 kb on + strand at 444.919 kb on - strand at 444.920 kb on + strand at 444.956 kb on + strand at 444.962 kb on - strand at 445.021 kb on - strand at 445.045 kb on + strand at 445.052 kb on + strand at 445.064 kb on - strand at 445.102 kb on - strand, within MMJJ_RS02350 at 445.130 kb on + strand, within MMJJ_RS02350 at 445.153 kb on - strand, within MMJJ_RS02350 at 445.198 kb on - strand, within MMJJ_RS02350 at 445.199 kb on + strand, within MMJJ_RS02350 at 445.203 kb on + strand, within MMJJ_RS02350 at 445.308 kb on + strand, within MMJJ_RS02350 at 445.309 kb on - strand, within MMJJ_RS02350 at 445.309 kb on - strand, within MMJJ_RS02350 at 445.309 kb on - strand, within MMJJ_RS02350 at 445.309 kb on - strand, within MMJJ_RS02350 at 445.309 kb on - strand, within MMJJ_RS02350 at 445.310 kb on + strand, within MMJJ_RS02350 at 445.310 kb on + strand, within MMJJ_RS02350 at 445.310 kb on + strand, within MMJJ_RS02350 at 445.310 kb on + strand, within MMJJ_RS02350 at 445.310 kb on + strand, within MMJJ_RS02350 at 445.314 kb on - strand, within MMJJ_RS02350 at 445.315 kb on + strand, within MMJJ_RS02350 at 445.369 kb on - strand, within MMJJ_RS02350 at 445.370 kb on + strand, within MMJJ_RS02350 at 445.464 kb on + strand, within MMJJ_RS02350 at 445.484 kb on + strand, within MMJJ_RS02350 at 445.595 kb on - strand, within MMJJ_RS02350 at 445.634 kb on - strand, within MMJJ_RS02350 at 445.665 kb on - strand, within MMJJ_RS02350 at 445.665 kb on - strand, within MMJJ_RS02350 at 445.832 kb on - strand, within MMJJ_RS02350 at 445.833 kb on + strand, within MMJJ_RS02350 at 445.914 kb on + strand, within MMJJ_RS02350 at 445.935 kb on - strand, within MMJJ_RS02350 at 445.953 kb on + strand, within MMJJ_RS02350 at 445.989 kb on - strand, within MMJJ_RS02350 at 445.997 kb on - strand, within MMJJ_RS02350 at 446.001 kb on - strand, within MMJJ_RS02350 at 446.002 kb on + strand, within MMJJ_RS02350 at 446.005 kb on - strand, within MMJJ_RS02350 at 446.034 kb on - strand, within MMJJ_RS02350 at 446.035 kb on + strand, within MMJJ_RS02350 at 446.035 kb on + strand, within MMJJ_RS02350 at 446.041 kb on - strand, within MMJJ_RS02350 at 446.042 kb on + strand, within MMJJ_RS02350 at 446.044 kb on + strand, within MMJJ_RS02350 at 446.048 kb on + strand, within MMJJ_RS02350 at 446.048 kb on + strand, within MMJJ_RS02350 at 446.062 kb on - strand, within MMJJ_RS02350 at 446.063 kb on + strand, within MMJJ_RS02350 at 446.086 kb on + strand, within MMJJ_RS02350 at 446.098 kb on + strand, within MMJJ_RS02350 at 446.115 kb on - strand, within MMJJ_RS02350 at 446.115 kb on - strand, within MMJJ_RS02350 at 446.116 kb on + strand, within MMJJ_RS02350 at 446.119 kb on - strand, within MMJJ_RS02350 at 446.120 kb on + strand, within MMJJ_RS02350 at 446.120 kb on + strand, within MMJJ_RS02350 at 446.120 kb on + strand, within MMJJ_RS02350 at 446.144 kb on - strand at 446.144 kb on - strand at 446.145 kb on + strand at 446.145 kb on + strand at 446.145 kb on + strand at 446.145 kb on + strand at 446.145 kb on + strand at 446.145 kb on + strand at 446.145 kb on + strand at 446.147 kb on + strand at 446.151 kb on - strand at 446.151 kb on - strand at 446.152 kb on + strand at 446.152 kb on + strand at 446.152 kb on + strand at 446.152 kb on + strand at 446.152 kb on + strand at 446.196 kb on - strand at 446.196 kb on - strand at 446.197 kb on + strand at 446.197 kb on + strand at 446.237 kb on - strand at 446.237 kb on - strand at 446.238 kb on + strand at 446.265 kb on - strand at 446.275 kb on - strand at 446.302 kb on - strand at 446.302 kb on - strand at 446.306 kb on - strand at 446.326 kb on + strand at 446.387 kb on + strand at 446.408 kb on + strand at 446.488 kb on - strand at 446.497 kb on + strand at 446.501 kb on - strand at 446.516 kb on - strand at 446.516 kb on - strand at 446.549 kb on - strand at 446.550 kb on + strand at 446.550 kb on + strand at 446.550 kb on + strand at 446.550 kb on + strand at 446.550 kb on + strand at 446.553 kb on - strand at 446.553 kb on - strand at 446.553 kb on - strand at 446.553 kb on - strand at 446.553 kb on - strand at 446.554 kb on + strand at 446.554 kb on + strand at 446.554 kb on + strand at 446.554 kb on + strand at 446.554 kb on + strand at 446.554 kb on + strand at 446.555 kb on - strand at 446.555 kb on - strand at 446.555 kb on - strand at 446.556 kb on + strand at 446.556 kb on + strand at 446.556 kb on + strand at 446.556 kb on + strand at 446.556 kb on + strand at 446.556 kb on + strand at 446.556 kb on + strand at 446.556 kb on + strand at 446.571 kb on - strand at 446.619 kb on - strand at 446.620 kb on + strand at 446.620 kb on + strand at 446.620 kb on + strand at 446.620 kb on + strand at 446.620 kb on + strand at 446.662 kb on - strand at 446.695 kb on - strand, within MMJJ_RS02355 at 446.696 kb on + strand, within MMJJ_RS02355 at 446.696 kb on + strand, within MMJJ_RS02355 at 446.696 kb on + strand, within MMJJ_RS02355 at 446.697 kb on - strand, within MMJJ_RS02355 at 446.697 kb on - strand, within MMJJ_RS02355 at 446.697 kb on - strand, within MMJJ_RS02355 at 446.697 kb on - strand, within MMJJ_RS02355 at 446.698 kb on + strand, within MMJJ_RS02355 at 446.705 kb on - strand, within MMJJ_RS02355 at 446.708 kb on - strand, within MMJJ_RS02355 at 446.709 kb on + strand, within MMJJ_RS02355 at 446.750 kb on - strand, within MMJJ_RS02355 at 446.751 kb on + strand, within MMJJ_RS02355 at 446.763 kb on - strand, within MMJJ_RS02355 at 446.764 kb on + strand, within MMJJ_RS02355 at 446.764 kb on + strand, within MMJJ_RS02355 at 446.764 kb on + strand, within MMJJ_RS02355 at 446.764 kb on + strand, within MMJJ_RS02355 at 446.771 kb on - strand, within MMJJ_RS02355 at 446.771 kb on - strand, within MMJJ_RS02355 at 446.772 kb on + strand, within MMJJ_RS02355 at 446.795 kb on + strand, within MMJJ_RS02355 at 446.815 kb on + strand, within MMJJ_RS02355 at 446.815 kb on + strand, within MMJJ_RS02355 at 446.823 kb on + strand, within MMJJ_RS02355 at 446.887 kb on + strand, within MMJJ_RS02355 at 446.887 kb on + strand, within MMJJ_RS02355 at 446.920 kb on - strand, within MMJJ_RS02355 at 446.920 kb on - strand, within MMJJ_RS02355 at 446.988 kb on - strand, within MMJJ_RS02355 at 447.075 kb on - strand at 447.126 kb on - strand at 447.178 kb on - strand at 447.187 kb on - strand at 447.187 kb on - strand at 447.189 kb on - strand at 447.190 kb on + strand at 447.227 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate pooled triplicate biofilm cells remove 444,001 + MMJJ_RS02345 0.40 -0.3 444,001 + MMJJ_RS02345 0.40 -0.8 444,007 + MMJJ_RS02345 0.41 +0.0 444,030 - MMJJ_RS02345 0.43 -0.0 444,059 + MMJJ_RS02345 0.45 +2.6 444,059 + MMJJ_RS02345 0.45 -0.9 444,073 - MMJJ_RS02345 0.46 -0.4 444,104 - MMJJ_RS02345 0.48 -0.2 444,105 + MMJJ_RS02345 0.49 +0.6 444,123 - MMJJ_RS02345 0.50 +0.1 444,125 - MMJJ_RS02345 0.50 -0.5 444,126 + MMJJ_RS02345 0.50 -0.3 444,135 - MMJJ_RS02345 0.51 +0.2 444,143 - MMJJ_RS02345 0.51 +3.5 444,209 + MMJJ_RS02345 0.57 -0.0 444,225 - MMJJ_RS02345 0.58 -1.2 444,225 - MMJJ_RS02345 0.58 -0.4 444,238 + MMJJ_RS02345 0.59 -0.3 444,238 + MMJJ_RS02345 0.59 +1.0 444,275 + MMJJ_RS02345 0.62 -0.1 444,275 + MMJJ_RS02345 0.62 -0.2 444,282 - MMJJ_RS02345 0.62 +0.2 444,293 - MMJJ_RS02345 0.63 +0.5 444,317 + MMJJ_RS02345 0.65 -0.7 444,328 - MMJJ_RS02345 0.66 +0.1 444,328 - MMJJ_RS02345 0.66 +0.1 444,329 + MMJJ_RS02345 0.66 +0.6 444,402 - MMJJ_RS02345 0.72 +0.7 444,433 + MMJJ_RS02345 0.74 -1.8 444,490 + MMJJ_RS02345 0.79 -0.8 444,517 - MMJJ_RS02345 0.81 -0.5 444,554 + MMJJ_RS02345 0.84 +1.7 444,682 - +0.1 444,682 - +0.3 444,683 + +0.2 444,697 - +0.6 444,704 + -0.8 444,704 + +0.3 444,719 - -0.1 444,726 - +0.2 444,837 + +0.2 444,873 - +0.2 444,873 - +0.4 444,878 - -0.5 444,899 - +3.2 444,918 + +1.1 444,919 - +0.4 444,920 + -0.7 444,956 + +0.2 444,962 - +0.2 445,021 - +0.0 445,045 + -0.1 445,052 + +3.8 445,064 - +0.2 445,102 - MMJJ_RS02350 0.10 -0.4 445,130 + MMJJ_RS02350 0.13 +0.2 445,153 - MMJJ_RS02350 0.14 +0.1 445,198 - MMJJ_RS02350 0.18 -0.4 445,199 + MMJJ_RS02350 0.18 +0.3 445,203 + MMJJ_RS02350 0.18 +0.4 445,308 + MMJJ_RS02350 0.26 +0.4 445,309 - MMJJ_RS02350 0.26 +0.1 445,309 - MMJJ_RS02350 0.26 +2.8 445,309 - MMJJ_RS02350 0.26 +0.3 445,309 - MMJJ_RS02350 0.26 +0.4 445,309 - MMJJ_RS02350 0.26 +3.8 445,310 + MMJJ_RS02350 0.27 +0.4 445,310 + MMJJ_RS02350 0.27 -0.4 445,310 + MMJJ_RS02350 0.27 +0.4 445,310 + MMJJ_RS02350 0.27 -0.1 445,310 + MMJJ_RS02350 0.27 -1.0 445,314 - MMJJ_RS02350 0.27 -0.3 445,315 + MMJJ_RS02350 0.27 -0.4 445,369 - MMJJ_RS02350 0.31 +0.7 445,370 + MMJJ_RS02350 0.31 +0.1 445,464 + MMJJ_RS02350 0.38 -1.4 445,484 + MMJJ_RS02350 0.40 +0.3 445,595 - MMJJ_RS02350 0.49 +2.9 445,634 - MMJJ_RS02350 0.52 +0.3 445,665 - MMJJ_RS02350 0.54 +2.3 445,665 - MMJJ_RS02350 0.54 +0.0 445,832 - MMJJ_RS02350 0.67 +0.7 445,833 + MMJJ_RS02350 0.67 +0.4 445,914 + MMJJ_RS02350 0.73 -0.8 445,935 - MMJJ_RS02350 0.75 +0.1 445,953 + MMJJ_RS02350 0.76 +0.6 445,989 - MMJJ_RS02350 0.79 -0.0 445,997 - MMJJ_RS02350 0.80 +0.7 446,001 - MMJJ_RS02350 0.80 +0.2 446,002 + MMJJ_RS02350 0.80 +0.1 446,005 - MMJJ_RS02350 0.80 -0.4 446,034 - MMJJ_RS02350 0.83 +0.2 446,035 + MMJJ_RS02350 0.83 +0.0 446,035 + MMJJ_RS02350 0.83 -0.2 446,041 - MMJJ_RS02350 0.83 +0.8 446,042 + MMJJ_RS02350 0.83 +2.3 446,044 + MMJJ_RS02350 0.83 -0.4 446,048 + MMJJ_RS02350 0.84 -0.9 446,048 + MMJJ_RS02350 0.84 -3.3 446,062 - MMJJ_RS02350 0.85 +0.6 446,063 + MMJJ_RS02350 0.85 +0.4 446,086 + MMJJ_RS02350 0.87 +1.2 446,098 + MMJJ_RS02350 0.88 +0.1 446,115 - MMJJ_RS02350 0.89 +0.6 446,115 - MMJJ_RS02350 0.89 -0.1 446,116 + MMJJ_RS02350 0.89 +0.8 446,119 - MMJJ_RS02350 0.89 +0.0 446,120 + MMJJ_RS02350 0.89 -0.1 446,120 + MMJJ_RS02350 0.89 -1.6 446,120 + MMJJ_RS02350 0.89 +0.3 446,144 - +0.5 446,144 - -0.0 446,145 + +0.6 446,145 + -0.0 446,145 + +0.4 446,145 + -0.2 446,145 + +0.3 446,145 + -1.7 446,145 + +0.1 446,147 + +1.4 446,151 - +2.2 446,151 - +0.2 446,152 + +0.0 446,152 + -0.3 446,152 + +0.4 446,152 + +1.4 446,152 + -1.2 446,196 - +0.8 446,196 - +0.1 446,197 + +1.3 446,197 + +1.2 446,237 - +0.3 446,237 - +1.5 446,238 + -0.3 446,265 - +0.7 446,275 - +0.5 446,302 - -0.1 446,302 - +0.3 446,306 - +0.6 446,326 + -0.3 446,387 + -0.1 446,408 + +0.0 446,488 - +1.0 446,497 + +0.3 446,501 - -0.4 446,516 - +1.6 446,516 - -1.2 446,549 - +0.0 446,550 + +0.1 446,550 + +0.1 446,550 + +0.5 446,550 + +0.1 446,550 + +0.9 446,553 - +0.7 446,553 - +0.0 446,553 - -0.2 446,553 - -1.8 446,553 - +2.7 446,554 + -0.1 446,554 + +0.5 446,554 + +0.4 446,554 + -0.4 446,554 + +0.4 446,554 + +2.3 446,555 - -0.2 446,555 - -0.5 446,555 - +1.1 446,556 + +0.5 446,556 + -0.1 446,556 + +0.8 446,556 + +0.3 446,556 + +0.6 446,556 + +0.1 446,556 + -2.2 446,556 + +2.9 446,571 - -0.8 446,619 - +0.3 446,620 + -0.2 446,620 + +0.5 446,620 + +0.0 446,620 + +0.3 446,620 + -0.1 446,662 - +1.0 446,695 - MMJJ_RS02355 0.16 -0.7 446,696 + MMJJ_RS02355 0.16 +0.2 446,696 + MMJJ_RS02355 0.16 +0.3 446,696 + MMJJ_RS02355 0.16 -1.0 446,697 - MMJJ_RS02355 0.16 -0.0 446,697 - MMJJ_RS02355 0.16 +0.6 446,697 - MMJJ_RS02355 0.16 +0.3 446,697 - MMJJ_RS02355 0.16 -0.3 446,698 + MMJJ_RS02355 0.16 +0.4 446,705 - MMJJ_RS02355 0.18 +0.2 446,708 - MMJJ_RS02355 0.18 -0.2 446,709 + MMJJ_RS02355 0.19 -0.2 446,750 - MMJJ_RS02355 0.27 -0.2 446,751 + MMJJ_RS02355 0.27 +0.2 446,763 - MMJJ_RS02355 0.30 +0.0 446,764 + MMJJ_RS02355 0.30 -0.3 446,764 + MMJJ_RS02355 0.30 +0.2 446,764 + MMJJ_RS02355 0.30 -0.2 446,764 + MMJJ_RS02355 0.30 +0.2 446,771 - MMJJ_RS02355 0.32 -0.1 446,771 - MMJJ_RS02355 0.32 -0.7 446,772 + MMJJ_RS02355 0.32 -1.0 446,795 + MMJJ_RS02355 0.37 +2.2 446,815 + MMJJ_RS02355 0.41 +0.4 446,815 + MMJJ_RS02355 0.41 +2.0 446,823 + MMJJ_RS02355 0.43 -0.2 446,887 + MMJJ_RS02355 0.56 -0.1 446,887 + MMJJ_RS02355 0.56 +2.2 446,920 - MMJJ_RS02355 0.63 +0.3 446,920 - MMJJ_RS02355 0.63 +0.5 446,988 - MMJJ_RS02355 0.77 -0.5 447,075 - -0.2 447,126 - -0.5 447,178 - +0.1 447,187 - +2.6 447,187 - +0.2 447,189 - +0.0 447,190 + +0.0 447,227 + -0.2
Or see this region's nucleotide sequence