Experiment: Formate pooled triplicate biofilm cells
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS01190 and MMJJ_RS01195 are separated by 76 nucleotides MMJJ_RS01195 and MMJJ_RS01200 are separated by 24 nucleotides MMJJ_RS01200 and MMJJ_RS09335 are separated by 125 nucleotides MMJJ_RS09335 and MMJJ_RS01205 are separated by 28 nucleotides
MMJJ_RS01190: MMJJ_RS01190 - hypothetical protein, at 228,923 to 229,852
_RS01190
MMJJ_RS01195: MMJJ_RS01195 - aspartate dehydrogenase, at 229,929 to 230,732
_RS01195
MMJJ_RS01200: MMJJ_RS01200 - PRC-barrel domain-containing protein, at 230,757 to 231,011
_RS01200
MMJJ_RS09335: MMJJ_RS09335 - hypothetical protein, at 231,137 to 231,307
_RS09335
MMJJ_RS01205: MMJJ_RS01205 - DNA adenine methylase, at 231,336 to 232,256
_RS01205
Position (kb) 229
230
231 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 229.006 kb on - strand at 229.007 kb on + strand at 229.014 kb on + strand at 229.057 kb on - strand, within MMJJ_RS01190 at 229.091 kb on - strand, within MMJJ_RS01190 at 229.094 kb on + strand, within MMJJ_RS01190 at 229.098 kb on - strand, within MMJJ_RS01190 at 229.103 kb on + strand, within MMJJ_RS01190 at 229.103 kb on + strand at 229.113 kb on + strand, within MMJJ_RS01190 at 229.165 kb on - strand, within MMJJ_RS01190 at 229.198 kb on - strand, within MMJJ_RS01190 at 229.198 kb on - strand, within MMJJ_RS01190 at 229.199 kb on + strand, within MMJJ_RS01190 at 229.199 kb on + strand, within MMJJ_RS01190 at 229.199 kb on + strand, within MMJJ_RS01190 at 229.203 kb on - strand, within MMJJ_RS01190 at 229.204 kb on + strand, within MMJJ_RS01190 at 229.204 kb on + strand, within MMJJ_RS01190 at 229.204 kb on + strand, within MMJJ_RS01190 at 229.214 kb on - strand, within MMJJ_RS01190 at 229.243 kb on - strand, within MMJJ_RS01190 at 229.244 kb on + strand, within MMJJ_RS01190 at 229.290 kb on + strand, within MMJJ_RS01190 at 229.293 kb on - strand, within MMJJ_RS01190 at 229.294 kb on + strand, within MMJJ_RS01190 at 229.301 kb on + strand, within MMJJ_RS01190 at 229.315 kb on - strand, within MMJJ_RS01190 at 229.315 kb on - strand, within MMJJ_RS01190 at 229.316 kb on + strand, within MMJJ_RS01190 at 229.348 kb on - strand, within MMJJ_RS01190 at 229.454 kb on - strand, within MMJJ_RS01190 at 229.468 kb on - strand, within MMJJ_RS01190 at 229.495 kb on + strand, within MMJJ_RS01190 at 229.572 kb on - strand, within MMJJ_RS01190 at 229.572 kb on - strand, within MMJJ_RS01190 at 229.611 kb on - strand, within MMJJ_RS01190 at 229.649 kb on - strand, within MMJJ_RS01190 at 229.650 kb on + strand, within MMJJ_RS01190 at 229.753 kb on + strand, within MMJJ_RS01190 at 229.753 kb on + strand, within MMJJ_RS01190 at 229.796 kb on + strand at 229.845 kb on + strand at 229.850 kb on - strand at 229.854 kb on - strand at 229.855 kb on + strand at 229.855 kb on + strand at 229.868 kb on - strand at 229.869 kb on + strand at 229.930 kb on - strand at 229.931 kb on + strand at 230.736 kb on + strand at 230.771 kb on - strand at 230.953 kb on - strand at 230.953 kb on - strand, within MMJJ_RS01200 at 230.953 kb on - strand, within MMJJ_RS01200 at 230.953 kb on - strand, within MMJJ_RS01200 at 230.954 kb on + strand, within MMJJ_RS01200 at 230.954 kb on + strand, within MMJJ_RS01200 at 230.954 kb on + strand, within MMJJ_RS01200 at 230.956 kb on + strand, within MMJJ_RS01200 at 230.957 kb on - strand, within MMJJ_RS01200 at 230.957 kb on - strand, within MMJJ_RS01200 at 231.014 kb on - strand at 231.043 kb on + strand at 231.054 kb on + strand at 231.064 kb on + strand at 231.086 kb on - strand at 231.087 kb on + strand at 231.090 kb on + strand at 231.092 kb on + strand at 231.092 kb on + strand at 231.092 kb on + strand at 231.101 kb on + strand at 231.101 kb on + strand at 231.102 kb on - strand at 231.103 kb on + strand at 231.131 kb on - strand at 231.136 kb on - strand at 231.136 kb on - strand at 231.136 kb on - strand at 231.136 kb on - strand at 231.136 kb on - strand at 231.136 kb on - strand at 231.136 kb on - strand at 231.136 kb on - strand at 231.136 kb on - strand at 231.137 kb on + strand at 231.137 kb on + strand at 231.137 kb on + strand at 231.137 kb on + strand at 231.137 kb on + strand at 231.137 kb on + strand at 231.137 kb on + strand at 231.137 kb on + strand at 231.137 kb on + strand at 231.150 kb on + strand at 231.150 kb on + strand at 231.150 kb on + strand at 231.181 kb on - strand, within MMJJ_RS09335 at 231.181 kb on - strand, within MMJJ_RS09335 at 231.181 kb on - strand, within MMJJ_RS09335 at 231.181 kb on - strand, within MMJJ_RS09335 at 231.182 kb on + strand, within MMJJ_RS09335 at 231.182 kb on + strand, within MMJJ_RS09335 at 231.182 kb on + strand, within MMJJ_RS09335 at 231.184 kb on + strand, within MMJJ_RS09335 at 231.184 kb on + strand, within MMJJ_RS09335 at 231.263 kb on + strand, within MMJJ_RS09335 at 231.263 kb on + strand at 231.268 kb on + strand, within MMJJ_RS09335 at 231.306 kb on + strand at 231.317 kb on - strand at 231.318 kb on + strand at 231.320 kb on - strand at 231.330 kb on - strand at 231.402 kb on - strand at 231.431 kb on - strand, within MMJJ_RS01205 at 231.432 kb on + strand, within MMJJ_RS01205 at 231.442 kb on - strand, within MMJJ_RS01205 at 231.476 kb on - strand, within MMJJ_RS01205 at 231.476 kb on - strand, within MMJJ_RS01205 at 231.476 kb on - strand, within MMJJ_RS01205 at 231.477 kb on + strand, within MMJJ_RS01205 at 231.494 kb on - strand, within MMJJ_RS01205 at 231.505 kb on + strand, within MMJJ_RS01205 at 231.505 kb on + strand, within MMJJ_RS01205 at 231.508 kb on - strand at 231.508 kb on - strand, within MMJJ_RS01205 at 231.508 kb on - strand, within MMJJ_RS01205 at 231.509 kb on + strand, within MMJJ_RS01205 at 231.509 kb on + strand, within MMJJ_RS01205 at 231.509 kb on + strand, within MMJJ_RS01205 at 231.509 kb on + strand, within MMJJ_RS01205 at 231.509 kb on + strand, within MMJJ_RS01205 at 231.534 kb on + strand, within MMJJ_RS01205 at 231.582 kb on + strand, within MMJJ_RS01205 at 231.582 kb on + strand, within MMJJ_RS01205 at 231.594 kb on + strand, within MMJJ_RS01205 at 231.599 kb on - strand, within MMJJ_RS01205 at 231.637 kb on - strand, within MMJJ_RS01205 at 231.638 kb on + strand, within MMJJ_RS01205 at 231.638 kb on + strand, within MMJJ_RS01205 at 231.639 kb on - strand, within MMJJ_RS01205 at 231.683 kb on - strand, within MMJJ_RS01205 at 231.685 kb on - strand, within MMJJ_RS01205
Per-strain Table
Position Strand Gene LocusTag Fraction Formate pooled triplicate biofilm cells remove 229,006 - +0.7 229,007 + +0.1 229,014 + -0.3 229,057 - MMJJ_RS01190 0.14 -0.2 229,091 - MMJJ_RS01190 0.18 +4.0 229,094 + MMJJ_RS01190 0.18 -0.7 229,098 - MMJJ_RS01190 0.19 -0.2 229,103 + MMJJ_RS01190 0.19 -0.2 229,103 + -0.8 229,113 + MMJJ_RS01190 0.20 +0.3 229,165 - MMJJ_RS01190 0.26 -0.8 229,198 - MMJJ_RS01190 0.30 -0.2 229,198 - MMJJ_RS01190 0.30 +0.2 229,199 + MMJJ_RS01190 0.30 +4.1 229,199 + MMJJ_RS01190 0.30 -0.3 229,199 + MMJJ_RS01190 0.30 +0.1 229,203 - MMJJ_RS01190 0.30 +0.0 229,204 + MMJJ_RS01190 0.30 -0.3 229,204 + MMJJ_RS01190 0.30 +0.2 229,204 + MMJJ_RS01190 0.30 +0.0 229,214 - MMJJ_RS01190 0.31 -0.5 229,243 - MMJJ_RS01190 0.34 +3.2 229,244 + MMJJ_RS01190 0.35 +0.2 229,290 + MMJJ_RS01190 0.39 +0.2 229,293 - MMJJ_RS01190 0.40 -0.5 229,294 + MMJJ_RS01190 0.40 -0.0 229,301 + MMJJ_RS01190 0.41 -0.2 229,315 - MMJJ_RS01190 0.42 -1.0 229,315 - MMJJ_RS01190 0.42 -0.8 229,316 + MMJJ_RS01190 0.42 -0.2 229,348 - MMJJ_RS01190 0.46 -0.2 229,454 - MMJJ_RS01190 0.57 +2.2 229,468 - MMJJ_RS01190 0.59 -0.9 229,495 + MMJJ_RS01190 0.62 -0.1 229,572 - MMJJ_RS01190 0.70 +3.0 229,572 - MMJJ_RS01190 0.70 -0.5 229,611 - MMJJ_RS01190 0.74 +4.6 229,649 - MMJJ_RS01190 0.78 -0.2 229,650 + MMJJ_RS01190 0.78 +0.6 229,753 + MMJJ_RS01190 0.89 -0.3 229,753 + MMJJ_RS01190 0.89 -0.8 229,796 + +0.5 229,845 + +0.0 229,850 - +0.0 229,854 - +0.1 229,855 + -0.7 229,855 + +4.6 229,868 - -0.4 229,869 + -1.4 229,930 - -0.1 229,931 + +4.4 230,736 + -0.8 230,771 - -2.8 230,953 - -0.8 230,953 - MMJJ_RS01200 0.77 -2.4 230,953 - MMJJ_RS01200 0.77 -2.1 230,953 - MMJJ_RS01200 0.77 -1.4 230,954 + MMJJ_RS01200 0.77 -2.4 230,954 + MMJJ_RS01200 0.77 -1.4 230,954 + MMJJ_RS01200 0.77 -0.8 230,956 + MMJJ_RS01200 0.78 -2.1 230,957 - MMJJ_RS01200 0.78 -2.4 230,957 - MMJJ_RS01200 0.78 -2.4 231,014 - -3.0 231,043 + -1.4 231,054 + -2.1 231,064 + -3.6 231,086 - +0.3 231,087 + +0.9 231,090 + -0.2 231,092 + -0.9 231,092 + +0.2 231,092 + +0.1 231,101 + +2.6 231,101 + -0.3 231,102 - -0.2 231,103 + -0.5 231,131 - -0.8 231,136 - -1.1 231,136 - -0.1 231,136 - +1.0 231,136 - +1.2 231,136 - +0.3 231,136 - -0.5 231,136 - -0.0 231,136 - +0.4 231,136 - -1.2 231,137 + +0.4 231,137 + -0.5 231,137 + -0.7 231,137 + +0.1 231,137 + +0.7 231,137 + -0.2 231,137 + +0.1 231,137 + +0.4 231,137 + -0.0 231,150 + -0.0 231,150 + -0.1 231,150 + -0.1 231,181 - MMJJ_RS09335 0.26 -1.0 231,181 - MMJJ_RS09335 0.26 +3.0 231,181 - MMJJ_RS09335 0.26 +0.5 231,181 - MMJJ_RS09335 0.26 -0.4 231,182 + MMJJ_RS09335 0.26 +0.2 231,182 + MMJJ_RS09335 0.26 +1.2 231,182 + MMJJ_RS09335 0.26 -0.3 231,184 + MMJJ_RS09335 0.27 +0.2 231,184 + MMJJ_RS09335 0.27 -1.0 231,263 + MMJJ_RS09335 0.74 +0.0 231,263 + -1.4 231,268 + MMJJ_RS09335 0.77 -1.1 231,306 + -0.6 231,317 - -0.1 231,318 + -0.6 231,320 - -0.4 231,330 - -0.5 231,402 - +0.0 231,431 - MMJJ_RS01205 0.10 -1.8 231,432 + MMJJ_RS01205 0.10 -0.8 231,442 - MMJJ_RS01205 0.12 -0.4 231,476 - MMJJ_RS01205 0.15 +0.8 231,476 - MMJJ_RS01205 0.15 +1.5 231,476 - MMJJ_RS01205 0.15 -0.3 231,477 + MMJJ_RS01205 0.15 +0.7 231,494 - MMJJ_RS01205 0.17 +0.9 231,505 + MMJJ_RS01205 0.18 -0.4 231,505 + MMJJ_RS01205 0.18 -0.2 231,508 - -0.8 231,508 - MMJJ_RS01205 0.19 +0.1 231,508 - MMJJ_RS01205 0.19 -0.1 231,509 + MMJJ_RS01205 0.19 -0.3 231,509 + MMJJ_RS01205 0.19 +0.3 231,509 + MMJJ_RS01205 0.19 +0.5 231,509 + MMJJ_RS01205 0.19 -0.6 231,509 + MMJJ_RS01205 0.19 -0.1 231,534 + MMJJ_RS01205 0.21 -0.2 231,582 + MMJJ_RS01205 0.27 +0.8 231,582 + MMJJ_RS01205 0.27 +1.0 231,594 + MMJJ_RS01205 0.28 -0.3 231,599 - MMJJ_RS01205 0.29 +0.1 231,637 - MMJJ_RS01205 0.33 -0.1 231,638 + MMJJ_RS01205 0.33 -0.5 231,638 + MMJJ_RS01205 0.33 -0.3 231,639 - MMJJ_RS01205 0.33 +0.3 231,683 - MMJJ_RS01205 0.38 -0.7 231,685 - MMJJ_RS01205 0.38 -0.8
Or see this region's nucleotide sequence