Strain Fitness in Pantoea sp. MT58 around IAI47_04945

Experiment: Defined media control, aerobic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Defined media control, aerobic
1,037,457	+		IAI47_04935	0.78	+0.2
1,037,458	-		IAI47_04935	0.78	+0.3
1,037,482	+		IAI47_04935	0.79	-1.8
1,037,482	+		IAI47_04935	0.79	-0.5
1,037,482	+		IAI47_04935	0.79	-2.4
1,037,482	+		IAI47_04935	0.79	+0.5
1,037,483	-		IAI47_04935	0.79	-0.9
1,037,483	-		IAI47_04935	0.79	-2.4
1,037,640	-				-0.5
1,037,664	+				-0.7
1,037,664	+				-1.1
1,037,664	+				-0.4
1,037,665	-				+1.4
1,037,665	-				+1.2
1,037,785	+				+0.0
1,037,785	+				-0.8
1,037,786	-				+0.8
1,037,786	-				-1.0
1,037,786	-				-0.8
1,037,786	-				-0.8
1,037,790	-				+0.1
1,037,804	+				+0.8
1,037,804	+				-0.5
1,037,804	+				-0.2
1,037,804	+				+0.2
1,037,805	-				-0.5
1,037,805	-				-1.8
1,037,838	+				-0.2
1,037,838	+				+0.3
1,037,838	+				-0.8
1,037,838	+				-0.5
1,037,838	+				+1.4
1,037,838	+				-0.7
1,037,839	-				+0.1
1,037,839	-				-1.2
1,037,839	-				-0.7
1,037,839	-				-0.5
1,037,839	-				-0.3
1,037,839	-				-0.6
1,037,839	-				+0.2
1,037,839	-				+0.7
1,037,839	-				+1.0
1,037,839	-				-0.2
1,037,840	-				-0.9
1,037,912	-		IAI47_04940	0.20	-1.8
1,037,912	-		IAI47_04940	0.20	-0.7
1,037,912	-		IAI47_04940	0.20	-1.3
1,037,946	-		IAI47_04940	0.25	+0.2
1,037,946	-		IAI47_04940	0.25	-1.0
1,037,968	-		IAI47_04940	0.28	-1.4
1,037,968	-		IAI47_04940	0.28	+1.0
1,037,977	+		IAI47_04940	0.30	+0.7
1,037,978	-		IAI47_04940	0.30	-0.2
1,038,075	+		IAI47_04940	0.44	-0.1
1,038,075	+		IAI47_04940	0.44	-1.4
1,038,076	-		IAI47_04940	0.44	-0.6
1,038,096	+		IAI47_04940	0.47	-1.0
1,038,096	+		IAI47_04940	0.47	+0.0
1,038,096	+		IAI47_04940	0.47	+0.3
1,038,096	+		IAI47_04940	0.47	-0.4
1,038,097	-		IAI47_04940	0.48	+0.6
1,038,097	-		IAI47_04940	0.48	-0.7
1,038,097	-		IAI47_04940	0.48	-0.5
1,038,097	-		IAI47_04940	0.48	+0.6
1,038,130	+		IAI47_04940	0.52	+0.4
1,038,130	+		IAI47_04940	0.52	-0.1
1,038,130	+		IAI47_04940	0.52	+0.5
1,038,131	-		IAI47_04940	0.53	-0.2
1,038,131	-		IAI47_04940	0.53	-0.8
1,038,131	-		IAI47_04940	0.53	+0.1
1,038,131	-		IAI47_04940	0.53	-1.0
1,038,131	-		IAI47_04940	0.53	+0.2
1,038,131	-		IAI47_04940	0.53	-0.8
1,038,247	+		IAI47_04940	0.70	-1.8
1,038,247	+		IAI47_04940	0.70	-1.3
1,038,247	+		IAI47_04940	0.70	+0.1
1,038,248	-		IAI47_04940	0.70	+0.2
1,038,248	-		IAI47_04940	0.70	+0.5
1,038,274	-		IAI47_04940	0.74	-0.5
1,038,274	-		IAI47_04940	0.74	-0.7
1,038,306	+		IAI47_04940	0.79	+0.6
1,038,307	-		IAI47_04940	0.79	-0.3
1,038,339	+		IAI47_04940	0.84	-0.1
1,038,339	+		IAI47_04940	0.84	+0.7
1,038,339	+		IAI47_04940	0.84	-1.1
1,038,339	+		IAI47_04940	0.84	+0.2
1,038,339	+		IAI47_04940	0.84	-1.9
1,038,340	-		IAI47_04940	0.84	-0.0
1,038,340	-		IAI47_04940	0.84	+0.9
1,038,340	-		IAI47_04940	0.84	-1.7
1,038,340	-		IAI47_04940	0.84	-0.2
1,038,340	-		IAI47_04940	0.84	+0.5
1,038,340	-		IAI47_04940	0.84	-1.0
1,038,384	+				-1.2
1,038,385	-				-1.0
1,038,417	+				-1.0
1,038,417	+				+0.6
1,038,417	+				-1.2
1,038,607	+		IAI47_04945	0.12	+0.9
1,038,608	-		IAI47_04945	0.12	+0.3
1,038,608	-		IAI47_04945	0.12	+0.4
1,038,608	-		IAI47_04945	0.12	-0.8
1,038,608	-		IAI47_04945	0.12	-0.2
1,038,690	-		IAI47_04945	0.18	-0.8
1,038,745	+		IAI47_04945	0.22	+0.5
1,038,745	+		IAI47_04945	0.22	-0.2
1,038,745	+		IAI47_04945	0.22	+0.8
1,038,746	-		IAI47_04945	0.23	-0.5
1,038,746	-		IAI47_04945	0.23	+0.8
1,038,877	+		IAI47_04945	0.32	+0.5
1,038,877	+		IAI47_04945	0.32	-1.1
1,038,878	-		IAI47_04945	0.32	+0.7
1,038,878	-		IAI47_04945	0.32	-0.8
1,038,878	-		IAI47_04945	0.32	-0.2
1,038,878	-		IAI47_04945	0.32	-2.4
1,038,899	+		IAI47_04945	0.34	-0.8
1,038,899	+		IAI47_04945	0.34	+0.4
1,038,899	+		IAI47_04945	0.34	-0.7
1,038,899	+		IAI47_04945	0.34	-0.2
1,038,899	+		IAI47_04945	0.34	-0.5
1,038,900	-		IAI47_04945	0.34	+0.6
1,038,900	-		IAI47_04945	0.34	+1.5
1,038,900	-		IAI47_04945	0.34	-0.8
1,038,925	+		IAI47_04945	0.36	+0.4
1,038,926	-		IAI47_04945	0.36	+0.3
1,038,933	-		IAI47_04945	0.37	-0.3
1,038,933	-		IAI47_04945	0.37	-0.4
1,038,933	-		IAI47_04945	0.37	-0.5
1,038,933	-		IAI47_04945	0.37	-0.6
1,039,020	-		IAI47_04945	0.43	+0.8
1,039,020	-		IAI47_04945	0.43	+0.2
1,039,020	-		IAI47_04945	0.43	-1.3
1,039,020	-		IAI47_04945	0.43	+1.9
1,039,020	-		IAI47_04945	0.43	-0.1
1,039,085	+		IAI47_04945	0.48	-1.2
1,039,086	-		IAI47_04945	0.48	-1.4
1,039,114	+		IAI47_04945	0.50	+0.2
1,039,114	+		IAI47_04945	0.50	+0.3
1,039,164	-		IAI47_04945	0.54	-0.1
1,039,184	+		IAI47_04945	0.55	-0.5
1,039,184	+		IAI47_04945	0.55	+0.7
1,039,184	+		IAI47_04945	0.55	+0.4
1,039,185	-		IAI47_04945	0.55	-2.1
1,039,185	-		IAI47_04945	0.55	-0.5
1,039,211	+		IAI47_04945	0.57	-0.8
1,039,211	+		IAI47_04945	0.57	-0.2
1,039,211	+		IAI47_04945	0.57	-0.9
1,039,212	-		IAI47_04945	0.57	-0.5
1,039,212	-		IAI47_04945	0.57	-1.7
1,039,241	+		IAI47_04945	0.60	-0.9
1,039,329	+		IAI47_04945	0.66	-0.2
1,039,329	+		IAI47_04945	0.66	-0.9
1,039,329	+		IAI47_04945	0.66	-2.0
1,039,329	+		IAI47_04945	0.66	+0.0
1,039,329	+		IAI47_04945	0.66	+0.3
1,039,329	+		IAI47_04945	0.66	+0.5
1,039,329	+		IAI47_04945	0.66	-0.1
1,039,330	-		IAI47_04945	0.66	-1.6
1,039,330	-		IAI47_04945	0.66	-0.7
1,039,385	+		IAI47_04945	0.70	+0.0
1,039,385	+		IAI47_04945	0.70	-1.2
1,039,433	+		IAI47_04945	0.74	-0.5
1,039,433	+		IAI47_04945	0.74	-0.6
1,039,433	+		IAI47_04945	0.74	-0.1
1,039,433	+		IAI47_04945	0.74	+1.0
1,039,434	-		IAI47_04945	0.74	+0.6
1,039,434	-		IAI47_04945	0.74	+0.2
1,039,434	-		IAI47_04945	0.74	-0.3
1,039,516	+		IAI47_04945	0.80	-1.1
1,039,631	+		IAI47_04945	0.89	+2.0
1,039,632	-		IAI47_04945	0.89	-0.3
1,039,650	+				-0.6
1,039,651	-				-0.2
1,039,651	-				+0.3
1,039,658	+				-0.0
1,039,658	+				-2.5
1,039,659	-				+0.4
1,039,659	-				+0.3
1,039,659	-				+0.6
1,039,731	+				-0.0
1,039,731	+				-0.2
1,039,732	-				-0.3
1,039,732	-				-0.4
1,039,732	-				+0.5
1,039,732	-				+0.2
1,039,732	-				-1.4
1,039,732	-				-1.1
1,039,732	-				-1.3
1,039,732	-				-0.6
1,039,732	-				-1.0
1,039,733	+				-0.1
1,039,733	+				+0.4
1,039,733	+				-0.3
1,039,733	+				+0.0
1,039,733	+				-1.5
1,039,733	+				+0.5
1,039,733	+				-0.2
1,039,734	-				-0.5
1,039,779	+				+0.5
1,039,780	-				-0.0
1,039,780	-				+0.9
1,039,796	+				-0.4
1,039,796	+				-0.8
1,039,797	-				+0.1
1,039,797	-				+0.2
1,039,797	-				+1.0
1,039,799	+				-0.3
1,039,799	+				+0.4
1,039,849	+				+1.2
1,039,850	-				-0.6
1,039,850	-				-0.2
1,039,850	-				-0.1
1,039,917	+				-0.4
1,039,917	+				+1.4
1,039,918	-				-0.2
1,039,918	-				+0.8
1,039,918	-				+1.0
1,039,918	-				-1.2
1,039,918	-				+1.5
1,039,918	-				-0.8
1,039,918	-				-2.0
1,039,918	-				-0.4
1,039,918	-				-0.5
1,039,919	+				-1.2
1,039,919	+				-0.2
1,039,926	+				-0.6
1,039,926	+				+0.9
1,039,926	+				-0.0
1,039,927	-				+0.1
1,039,986	+				+0.2
1,039,987	-				-1.7
1,040,063	+		IAI47_04950	0.29	+0.2
1,040,063	+		IAI47_04950	0.29	+1.2
1,040,063	+		IAI47_04950	0.29	+1.0
1,040,063	+		IAI47_04950	0.29	+0.3
1,040,064	-		IAI47_04950	0.29	+1.0
1,040,102	-		IAI47_04950	0.40	+0.7
1,040,102	-		IAI47_04950	0.40	+0.7
1,040,116	+		IAI47_04950	0.44	-1.7
1,040,116	+		IAI47_04950	0.44	-0.9
1,040,116	+		IAI47_04950	0.44	-0.3
1,040,116	+		IAI47_04950	0.44	+2.3
1,040,116	+		IAI47_04950	0.44	-1.3
1,040,116	+		IAI47_04950	0.44	+0.6
1,040,116	+		IAI47_04950	0.44	-1.4
1,040,116	+		IAI47_04950	0.44	+0.3
1,040,117	-		IAI47_04950	0.45	+0.0
1,040,117	-		IAI47_04950	0.45	+0.2
1,040,117	-		IAI47_04950	0.45	+0.7
1,040,117	-		IAI47_04950	0.45	+0.1
1,040,117	-		IAI47_04950	0.45	-1.4
1,040,117	-		IAI47_04950	0.45	-2.5
1,040,117	-		IAI47_04950	0.45	+1.3
1,040,117	-		IAI47_04950	0.45	-0.8
1,040,117	-		IAI47_04950	0.45	+0.2
1,040,117	-		IAI47_04950	0.45	+0.7
1,040,117	-		IAI47_04950	0.45	+0.3
1,040,117	-		IAI47_04950	0.45	+0.5
1,040,117	-		IAI47_04950	0.45	+0.6
1,040,118	+		IAI47_04950	0.45	-1.2
1,040,118	+		IAI47_04950	0.45	-1.3
1,040,118	+		IAI47_04950	0.45	+1.1
1,040,118	+		IAI47_04950	0.45	-0.9
1,040,118	+		IAI47_04950	0.45	+1.3
1,040,118	+		IAI47_04950	0.45	+2.8
1,040,118	+		IAI47_04950	0.45	-2.1
1,040,119	-		IAI47_04950	0.45	+0.2
1,040,119	-		IAI47_04950	0.45	+1.6
1,040,119	-		IAI47_04950	0.45	-0.2
1,040,119	-		IAI47_04950	0.45	+0.3
1,040,119	-		IAI47_04950	0.45	+1.2
1,040,132	+		IAI47_04950	0.49	-0.4
1,040,133	-		IAI47_04950	0.49	+1.8
1,040,136	+		IAI47_04950	0.50	+1.0
1,040,136	+		IAI47_04950	0.50	+0.2
1,040,136	+		IAI47_04950	0.50	-1.2
1,040,137	-		IAI47_04950	0.50	+0.6
1,040,137	-		IAI47_04950	0.50	+0.7
1,040,137	-		IAI47_04950	0.50	+1.4
1,040,137	-		IAI47_04950	0.50	-0.2
1,040,170	-		IAI47_04950	0.60	+0.6
1,040,170	-		IAI47_04950	0.60	-1.5
1,040,178	+		IAI47_04950	0.63	+1.0
1,040,178	+		IAI47_04950	0.63	-0.7
1,040,179	-		IAI47_04950	0.63	-0.5
1,040,179	-		IAI47_04950	0.63	-0.0
1,040,196	+		IAI47_04950	0.68	+0.8
1,040,197	-		IAI47_04950	0.68	+0.5
1,040,274	+				-0.2
1,040,314	+				+0.5
1,040,315	-				+0.3
1,040,325	-				+1.0
1,040,325	-				-0.4
1,040,331	+				+2.2
1,040,333	+				+0.5
1,040,334	-				+1.1
1,040,334	-				-1.1
1,040,334	-				-0.8
1,040,334	-				-0.5
1,040,361	-				-0.7
1,040,384	+				-1.3
1,040,384	+				+1.3
1,040,385	-				+0.5
1,040,385	-				-0.3
1,040,385	-				+0.5
1,040,472	-				-0.4
1,040,472	-				-0.8
1,040,546	+				+0.5
1,040,549	+				-0.7
1,040,549	+				-0.1
1,040,549	+				+0.8
1,040,549	+				+0.3
1,040,699	+				-0.4
1,040,699	+				-0.9
1,040,699	+				-1.1
1,040,699	+				-2.0
1,040,700	-				-0.2
1,040,700	-				+0.7
1,040,700	-				-0.3
1,040,700	-				+0.2
1,040,702	+				+2.1
1,040,703	-				+0.6
1,040,711	+				+1.4
1,040,711	+				+0.0
1,040,711	+				+0.1
1,040,712	-				+0.3
1,040,712	-				-0.1
1,040,712	-				+0.1
1,040,712	-				+0.2
1,040,712	-				-1.3
1,040,712	-				-0.2
1,040,741	+				-0.2
1,040,742	-				+1.6