Strain Fitness in Pantoea sp. MT58 around IAI47_00880

Experiment: Defined media control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_00870 and IAI47_00875 are separated by 80 nucleotidesIAI47_00875 and IAI47_00880 are separated by 273 nucleotidesIAI47_00880 and IAI47_00885 are separated by 2 nucleotides IAI47_00870: IAI47_00870 - 50S ribosomal protein L31, at 183,948 to 184,163 _00870 IAI47_00875: IAI47_00875 - met regulon transcriptional regulator MetJ, at 184,244 to 184,561 _00875 IAI47_00880: IAI47_00880 - cystathionine gamma-synthase, at 184,835 to 185,995 _00880 IAI47_00885: IAI47_00885 - bifunctional aspartate kinase/homoserine dehydrogenase II, at 185,998 to 188,433 _00885 Position (kb) 184 185 186Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 183.862 kb on + strandat 183.869 kb on + strandat 183.869 kb on + strandat 183.869 kb on + strandat 183.869 kb on + strandat 183.869 kb on + strandat 183.869 kb on + strandat 183.869 kb on + strandat 183.869 kb on + strandat 183.869 kb on + strandat 183.869 kb on + strandat 183.869 kb on + strandat 183.869 kb on + strandat 183.869 kb on + strandat 183.869 kb on + strandat 183.869 kb on + strandat 183.869 kb on + strandat 183.869 kb on + strandat 183.871 kb on + strandat 183.871 kb on + strandat 183.871 kb on + strandat 184.127 kb on + strand, within IAI47_00870at 184.128 kb on - strand, within IAI47_00870at 184.161 kb on + strandat 184.161 kb on + strandat 184.167 kb on + strandat 184.167 kb on + strandat 184.167 kb on + strandat 184.167 kb on + strandat 184.168 kb on - strandat 184.168 kb on - strandat 184.269 kb on - strandat 184.276 kb on + strand, within IAI47_00875at 184.328 kb on - strand, within IAI47_00875at 184.478 kb on - strand, within IAI47_00875at 184.478 kb on - strand, within IAI47_00875at 184.538 kb on - strandat 184.539 kb on + strandat 184.540 kb on - strandat 184.567 kb on - strandat 184.571 kb on + strandat 184.571 kb on + strandat 184.575 kb on + strandat 184.575 kb on + strandat 184.586 kb on - strandat 184.586 kb on - strandat 184.608 kb on + strandat 184.609 kb on - strandat 184.609 kb on - strandat 184.640 kb on - strandat 184.640 kb on - strandat 184.703 kb on - strandat 184.703 kb on - strandat 184.715 kb on + strandat 184.715 kb on + strandat 184.715 kb on + strandat 184.737 kb on + strandat 184.751 kb on + strandat 184.751 kb on + strandat 184.751 kb on + strandat 184.752 kb on - strandat 184.765 kb on + strandat 184.766 kb on - strandat 184.766 kb on - strandat 184.766 kb on - strandat 184.766 kb on - strandat 184.776 kb on - strandat 184.776 kb on - strandat 184.802 kb on - strandat 184.802 kb on - strandat 184.802 kb on - strandat 184.802 kb on - strandat 184.844 kb on - strandat 184.892 kb on + strandat 184.892 kb on + strandat 184.892 kb on + strandat 184.893 kb on - strandat 184.893 kb on - strandat 184.893 kb on - strandat 184.893 kb on - strandat 184.924 kb on + strandat 184.924 kb on + strandat 184.924 kb on + strandat 184.924 kb on + strandat 184.924 kb on + strandat 184.925 kb on - strandat 184.925 kb on - strandat 184.925 kb on - strandat 184.925 kb on - strandat 184.925 kb on - strandat 184.925 kb on - strandat 184.931 kb on + strandat 184.931 kb on + strandat 184.932 kb on - strandat 184.949 kb on - strandat 184.970 kb on + strand, within IAI47_00880at 184.971 kb on - strand, within IAI47_00880at 184.971 kb on - strand, within IAI47_00880at 184.971 kb on - strand, within IAI47_00880at 184.971 kb on - strand, within IAI47_00880at 184.971 kb on - strand, within IAI47_00880at 184.971 kb on - strand, within IAI47_00880at 185.004 kb on + strand, within IAI47_00880at 185.004 kb on + strand, within IAI47_00880at 185.005 kb on - strand, within IAI47_00880at 185.005 kb on - strand, within IAI47_00880at 185.005 kb on - strand, within IAI47_00880at 185.012 kb on - strand, within IAI47_00880at 185.012 kb on - strand, within IAI47_00880at 185.012 kb on - strand, within IAI47_00880at 185.012 kb on - strand, within IAI47_00880at 185.046 kb on + strand, within IAI47_00880at 185.046 kb on + strand, within IAI47_00880at 185.046 kb on + strand, within IAI47_00880at 185.049 kb on + strand, within IAI47_00880at 185.049 kb on + strand, within IAI47_00880at 185.049 kb on + strand, within IAI47_00880at 185.135 kb on + strand, within IAI47_00880at 185.147 kb on + strand, within IAI47_00880at 185.148 kb on - strand, within IAI47_00880at 185.148 kb on - strand, within IAI47_00880at 185.184 kb on - strand, within IAI47_00880at 185.293 kb on - strand, within IAI47_00880at 185.293 kb on - strand, within IAI47_00880at 185.300 kb on - strand, within IAI47_00880at 185.338 kb on + strand, within IAI47_00880at 185.338 kb on + strand, within IAI47_00880at 185.338 kb on + strand, within IAI47_00880at 185.338 kb on + strand, within IAI47_00880at 185.339 kb on - strand, within IAI47_00880at 185.339 kb on - strand, within IAI47_00880at 185.362 kb on + strand, within IAI47_00880at 185.362 kb on + strand, within IAI47_00880at 185.362 kb on + strand, within IAI47_00880at 185.362 kb on + strand, within IAI47_00880at 185.362 kb on + strand, within IAI47_00880at 185.362 kb on + strand, within IAI47_00880at 185.362 kb on + strand, within IAI47_00880at 185.363 kb on - strand, within IAI47_00880at 185.363 kb on - strand, within IAI47_00880at 185.363 kb on - strand, within IAI47_00880at 185.363 kb on - strand, within IAI47_00880at 185.422 kb on + strand, within IAI47_00880at 185.429 kb on + strand, within IAI47_00880at 185.429 kb on + strand, within IAI47_00880at 185.429 kb on + strand, within IAI47_00880at 185.429 kb on + strand, within IAI47_00880at 185.430 kb on - strand, within IAI47_00880at 185.430 kb on - strand, within IAI47_00880at 185.430 kb on - strand, within IAI47_00880at 185.454 kb on + strand, within IAI47_00880at 185.515 kb on + strand, within IAI47_00880at 185.515 kb on + strand, within IAI47_00880at 185.515 kb on + strand, within IAI47_00880at 185.516 kb on - strand, within IAI47_00880at 185.518 kb on + strand, within IAI47_00880at 185.518 kb on + strand, within IAI47_00880at 185.519 kb on - strand, within IAI47_00880at 185.519 kb on - strand, within IAI47_00880at 185.519 kb on - strand, within IAI47_00880at 185.519 kb on - strand, within IAI47_00880at 185.519 kb on - strand, within IAI47_00880at 185.519 kb on - strand, within IAI47_00880at 185.519 kb on - strand, within IAI47_00880at 185.526 kb on + strand, within IAI47_00880at 185.527 kb on - strand, within IAI47_00880at 185.527 kb on - strand, within IAI47_00880at 185.549 kb on + strand, within IAI47_00880at 185.549 kb on + strand, within IAI47_00880at 185.549 kb on + strand, within IAI47_00880at 185.549 kb on + strand, within IAI47_00880at 185.549 kb on + strand, within IAI47_00880at 185.549 kb on + strand, within IAI47_00880at 185.550 kb on - strand, within IAI47_00880at 185.550 kb on - strand, within IAI47_00880at 185.550 kb on - strand, within IAI47_00880at 185.572 kb on + strand, within IAI47_00880at 185.573 kb on - strand, within IAI47_00880at 185.628 kb on - strand, within IAI47_00880at 185.628 kb on - strand, within IAI47_00880at 185.628 kb on - strand, within IAI47_00880at 185.660 kb on + strand, within IAI47_00880at 185.660 kb on + strand, within IAI47_00880at 185.660 kb on + strand, within IAI47_00880at 185.660 kb on + strand, within IAI47_00880at 185.661 kb on - strand, within IAI47_00880at 185.661 kb on - strand, within IAI47_00880at 185.661 kb on - strand, within IAI47_00880at 185.661 kb on - strand, within IAI47_00880at 185.661 kb on - strand, within IAI47_00880at 185.703 kb on + strand, within IAI47_00880at 185.797 kb on + strand, within IAI47_00880at 185.797 kb on + strand, within IAI47_00880at 185.798 kb on - strand, within IAI47_00880at 185.866 kb on + strand, within IAI47_00880at 185.866 kb on + strand, within IAI47_00880at 185.866 kb on + strand, within IAI47_00880at 185.867 kb on - strand, within IAI47_00880at 185.867 kb on - strand, within IAI47_00880at 185.929 kb on + strandat 185.929 kb on + strandat 185.929 kb on + strandat 185.930 kb on - strandat 185.930 kb on - strandat 185.934 kb on - strandat 185.950 kb on - strandat 185.950 kb on - strandat 185.950 kb on - strandat 185.950 kb on - strandat 185.950 kb on - strandat 185.965 kb on + strandat 185.966 kb on - strandat 185.966 kb on - strandat 185.993 kb on + strandat 185.993 kb on + strandat 185.993 kb on + strandat 185.993 kb on + strandat 185.993 kb on + strandat 185.993 kb on + strandat 185.994 kb on - strandat 185.994 kb on - strandat 185.994 kb on - strandat 185.997 kb on + strandat 185.997 kb on + strandat 185.997 kb on + strandat 185.997 kb on + strandat 185.997 kb on + strandat 185.998 kb on - strandat 185.998 kb on - strandat 185.998 kb on - strandat 185.998 kb on - strandat 185.998 kb on - strandat 186.030 kb on + strandat 186.045 kb on + strandat 186.046 kb on - strandat 186.046 kb on - strandat 186.046 kb on - strandat 186.046 kb on - strandat 186.046 kb on - strandat 186.102 kb on + strandat 186.102 kb on + strandat 186.102 kb on + strandat 186.103 kb on - strandat 186.112 kb on + strandat 186.113 kb on - strandat 186.113 kb on - strandat 186.162 kb on + strandat 186.163 kb on - strandat 186.174 kb on + strandat 186.174 kb on + strandat 186.175 kb on - strandat 186.175 kb on - strandat 186.175 kb on - strandat 186.175 kb on - strandat 186.175 kb on - strandat 186.175 kb on - strandat 186.175 kb on - strandat 186.242 kb on - strand, within IAI47_00885at 186.293 kb on + strand, within IAI47_00885at 186.293 kb on + strand, within IAI47_00885at 186.294 kb on - strand, within IAI47_00885at 186.294 kb on - strand, within IAI47_00885at 186.294 kb on - strand, within IAI47_00885at 186.297 kb on + strand, within IAI47_00885at 186.297 kb on + strand, within IAI47_00885at 186.297 kb on + strand, within IAI47_00885at 186.298 kb on - strand, within IAI47_00885at 186.298 kb on - strand, within IAI47_00885at 186.298 kb on - strand, within IAI47_00885at 186.298 kb on - strand, within IAI47_00885at 186.298 kb on - strand, within IAI47_00885at 186.365 kb on - strand, within IAI47_00885at 186.510 kb on + strand, within IAI47_00885at 186.511 kb on - strand, within IAI47_00885at 186.511 kb on - strand, within IAI47_00885at 186.511 kb on - strand, within IAI47_00885at 186.511 kb on - strand, within IAI47_00885at 186.511 kb on - strand, within IAI47_00885at 186.556 kb on - strand, within IAI47_00885at 186.580 kb on - strand, within IAI47_00885at 186.580 kb on - strand, within IAI47_00885at 186.681 kb on + strand, within IAI47_00885at 186.682 kb on - strand, within IAI47_00885at 186.682 kb on - strand, within IAI47_00885at 186.706 kb on + strand, within IAI47_00885at 186.707 kb on - strand, within IAI47_00885at 186.755 kb on + strand, within IAI47_00885at 186.756 kb on - strand, within IAI47_00885at 186.808 kb on - strand, within IAI47_00885at 186.814 kb on - strand, within IAI47_00885at 186.814 kb on - strand, within IAI47_00885at 186.841 kb on - strand, within IAI47_00885at 186.841 kb on - strand, within IAI47_00885at 186.865 kb on + strand, within IAI47_00885at 186.866 kb on - strand, within IAI47_00885at 186.866 kb on - strand, within IAI47_00885

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined media control, aerobic
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183,862 + -0.4
183,869 + +0.4
183,869 + +1.0
183,869 + +0.1
183,869 + +1.0
183,869 + +1.0
183,869 + +0.6
183,869 + -1.2
183,869 + -0.9
183,869 + -0.7
183,869 + -0.7
183,869 + -0.8
183,869 + +0.3
183,869 + -1.1
183,869 + +1.4
183,869 + -1.7
183,869 + +1.1
183,869 + +0.9
183,871 + -0.7
183,871 + +1.5
183,871 + -1.1
184,127 + IAI47_00870 0.83 -0.8
184,128 - IAI47_00870 0.83 -0.7
184,161 + +1.6
184,161 + +0.0
184,167 + -0.4
184,167 + +0.9
184,167 + -0.2
184,167 + +1.6
184,168 - -0.6
184,168 - -1.0
184,269 - -0.2
184,276 + IAI47_00875 0.10 -0.7
184,328 - IAI47_00875 0.26 +0.1
184,478 - IAI47_00875 0.74 -0.6
184,478 - IAI47_00875 0.74 -1.7
184,538 - +0.9
184,539 + +0.0
184,540 - +0.8
184,567 - -0.9
184,571 + -0.4
184,571 + -0.7
184,575 + -0.3
184,575 + +1.1
184,586 - +1.1
184,586 - +0.2
184,608 + -0.6
184,609 - +0.2
184,609 - +0.4
184,640 - -0.9
184,640 - +0.9
184,703 - -0.7
184,703 - -0.3
184,715 + +0.5
184,715 + -0.2
184,715 + +0.1
184,737 + -1.9
184,751 + +1.3
184,751 + +1.2
184,751 + +0.2
184,752 - +0.1
184,765 + +0.5
184,766 - -0.2
184,766 - +1.5
184,766 - +1.9
184,766 - +0.8
184,776 - -1.5
184,776 - -2.2
184,802 - -2.3
184,802 - -1.9
184,802 - -1.7
184,802 - -2.6
184,844 - -1.4
184,892 + -3.2
184,892 + -1.3
184,892 + -2.1
184,893 - -3.1
184,893 - -0.1
184,893 - -1.7
184,893 - -2.2
184,924 + -1.7
184,924 + -1.2
184,924 + -1.6
184,924 + -3.7
184,924 + -3.1
184,925 - -2.8
184,925 - -2.4
184,925 - -3.2
184,925 - -1.7
184,925 - -1.2
184,925 - -2.1
184,931 + -2.0
184,931 + -2.6
184,932 - -1.6
184,949 - -1.4
184,970 + IAI47_00880 0.12 -3.9
184,971 - IAI47_00880 0.12 -0.1
184,971 - IAI47_00880 0.12 -2.4
184,971 - IAI47_00880 0.12 -0.7
184,971 - IAI47_00880 0.12 -2.1
184,971 - IAI47_00880 0.12 -1.9
184,971 - IAI47_00880 0.12 -1.2
185,004 + IAI47_00880 0.15 -2.4
185,004 + IAI47_00880 0.15 -3.6
185,005 - IAI47_00880 0.15 -0.7
185,005 - IAI47_00880 0.15 -0.7
185,005 - IAI47_00880 0.15 -1.9
185,012 - IAI47_00880 0.15 -1.4
185,012 - IAI47_00880 0.15 -2.9
185,012 - IAI47_00880 0.15 -2.4
185,012 - IAI47_00880 0.15 -0.5
185,046 + IAI47_00880 0.18 -1.6
185,046 + IAI47_00880 0.18 -3.1
185,046 + IAI47_00880 0.18 -1.9
185,049 + IAI47_00880 0.18 -1.9
185,049 + IAI47_00880 0.18 -2.9
185,049 + IAI47_00880 0.18 -0.6
185,135 + IAI47_00880 0.26 -1.7
185,147 + IAI47_00880 0.27 -1.5
185,148 - IAI47_00880 0.27 -1.6
185,148 - IAI47_00880 0.27 -3.2
185,184 - IAI47_00880 0.30 -4.7
185,293 - IAI47_00880 0.39 -2.1
185,293 - IAI47_00880 0.39 -1.8
185,300 - IAI47_00880 0.40 -1.5
185,338 + IAI47_00880 0.43 -1.7
185,338 + IAI47_00880 0.43 -0.8
185,338 + IAI47_00880 0.43 +0.2
185,338 + IAI47_00880 0.43 -0.6
185,339 - IAI47_00880 0.43 +0.3
185,339 - IAI47_00880 0.43 -1.8
185,362 + IAI47_00880 0.45 -1.0
185,362 + IAI47_00880 0.45 -2.6
185,362 + IAI47_00880 0.45 -2.5
185,362 + IAI47_00880 0.45 -3.1
185,362 + IAI47_00880 0.45 -1.2
185,362 + IAI47_00880 0.45 -0.9
185,362 + IAI47_00880 0.45 -2.1
185,363 - IAI47_00880 0.45 -2.9
185,363 - IAI47_00880 0.45 -2.2
185,363 - IAI47_00880 0.45 -1.2
185,363 - IAI47_00880 0.45 -2.0
185,422 + IAI47_00880 0.51 -3.8
185,429 + IAI47_00880 0.51 -2.0
185,429 + IAI47_00880 0.51 -3.6
185,429 + IAI47_00880 0.51 -0.7
185,429 + IAI47_00880 0.51 -2.1
185,430 - IAI47_00880 0.51 -0.4
185,430 - IAI47_00880 0.51 -2.3
185,430 - IAI47_00880 0.51 -3.1
185,454 + IAI47_00880 0.53 -1.2
185,515 + IAI47_00880 0.59 -3.2
185,515 + IAI47_00880 0.59 -4.0
185,515 + IAI47_00880 0.59 -3.0
185,516 - IAI47_00880 0.59 -1.7
185,518 + IAI47_00880 0.59 -1.5
185,518 + IAI47_00880 0.59 -0.2
185,519 - IAI47_00880 0.59 -1.5
185,519 - IAI47_00880 0.59 -2.2
185,519 - IAI47_00880 0.59 -2.5
185,519 - IAI47_00880 0.59 -1.4
185,519 - IAI47_00880 0.59 -3.2
185,519 - IAI47_00880 0.59 -3.1
185,519 - IAI47_00880 0.59 -3.7
185,526 + IAI47_00880 0.60 -3.6
185,527 - IAI47_00880 0.60 -1.7
185,527 - IAI47_00880 0.60 -2.9
185,549 + IAI47_00880 0.61 -1.3
185,549 + IAI47_00880 0.61 -3.4
185,549 + IAI47_00880 0.61 -0.7
185,549 + IAI47_00880 0.61 -1.5
185,549 + IAI47_00880 0.61 -1.9
185,549 + IAI47_00880 0.61 -2.5
185,550 - IAI47_00880 0.62 -2.0
185,550 - IAI47_00880 0.62 -3.6
185,550 - IAI47_00880 0.62 -1.8
185,572 + IAI47_00880 0.63 -1.2
185,573 - IAI47_00880 0.64 -2.1
185,628 - IAI47_00880 0.68 -3.5
185,628 - IAI47_00880 0.68 -3.7
185,628 - IAI47_00880 0.68 -1.4
185,660 + IAI47_00880 0.71 -3.8
185,660 + IAI47_00880 0.71 -2.7
185,660 + IAI47_00880 0.71 -1.3
185,660 + IAI47_00880 0.71 -3.8
185,661 - IAI47_00880 0.71 -0.7
185,661 - IAI47_00880 0.71 -2.4
185,661 - IAI47_00880 0.71 -3.5
185,661 - IAI47_00880 0.71 -3.3
185,661 - IAI47_00880 0.71 +0.5
185,703 + IAI47_00880 0.75 -3.5
185,797 + IAI47_00880 0.83 -2.0
185,797 + IAI47_00880 0.83 -1.4
185,798 - IAI47_00880 0.83 -4.2
185,866 + IAI47_00880 0.89 -0.7
185,866 + IAI47_00880 0.89 -2.3
185,866 + IAI47_00880 0.89 -1.8
185,867 - IAI47_00880 0.89 -3.6
185,867 - IAI47_00880 0.89 -3.0
185,929 + -2.5
185,929 + -0.4
185,929 + -1.9
185,930 - -1.0
185,930 - -3.3
185,934 - -2.4
185,950 - -2.9
185,950 - -3.6
185,950 - -2.5
185,950 - -2.9
185,950 - -1.6
185,965 + -1.6
185,966 - -2.9
185,966 - -3.2
185,993 + -0.2
185,993 + +0.0
185,993 + +0.8
185,993 + +1.3
185,993 + -2.0
185,993 + -0.2
185,994 - +0.6
185,994 - +0.4
185,994 - -0.6
185,997 + +0.9
185,997 + +0.6
185,997 + -1.9
185,997 + +0.2
185,997 + +0.7
185,998 - -0.3
185,998 - -0.3
185,998 - +0.2
185,998 - +0.4
185,998 - +0.5
186,030 + +0.1
186,045 + +0.1
186,046 - +0.5
186,046 - +0.4
186,046 - +1.7
186,046 - +0.5
186,046 - +0.4
186,102 + -1.1
186,102 + -0.8
186,102 + -0.4
186,103 - +0.4
186,112 + +0.4
186,113 - +1.1
186,113 - +0.7
186,162 + -1.1
186,163 - +0.5
186,174 + +0.2
186,174 + -0.4
186,175 - +0.5
186,175 - -1.9
186,175 - -0.1
186,175 - +0.8
186,175 - +0.1
186,175 - +0.5
186,175 - +2.0
186,242 - IAI47_00885 0.10 +0.8
186,293 + IAI47_00885 0.12 +1.5
186,293 + IAI47_00885 0.12 +0.3
186,294 - IAI47_00885 0.12 -0.0
186,294 - IAI47_00885 0.12 -0.9
186,294 - IAI47_00885 0.12 +0.3
186,297 + IAI47_00885 0.12 -0.2
186,297 + IAI47_00885 0.12 +0.8
186,297 + IAI47_00885 0.12 +0.2
186,298 - IAI47_00885 0.12 -0.5
186,298 - IAI47_00885 0.12 +1.1
186,298 - IAI47_00885 0.12 +0.1
186,298 - IAI47_00885 0.12 +0.5
186,298 - IAI47_00885 0.12 -1.2
186,365 - IAI47_00885 0.15 +0.9
186,510 + IAI47_00885 0.21 +0.3
186,511 - IAI47_00885 0.21 +0.7
186,511 - IAI47_00885 0.21 -0.2
186,511 - IAI47_00885 0.21 +0.8
186,511 - IAI47_00885 0.21 +0.9
186,511 - IAI47_00885 0.21 -0.6
186,556 - IAI47_00885 0.23 -0.7
186,580 - IAI47_00885 0.24 -0.3
186,580 - IAI47_00885 0.24 +0.8
186,681 + IAI47_00885 0.28 +1.3
186,682 - IAI47_00885 0.28 +0.9
186,682 - IAI47_00885 0.28 +1.4
186,706 + IAI47_00885 0.29 +0.4
186,707 - IAI47_00885 0.29 -0.1
186,755 + IAI47_00885 0.31 -0.1
186,756 - IAI47_00885 0.31 +0.9
186,808 - IAI47_00885 0.33 -0.6
186,814 - IAI47_00885 0.33 +0.4
186,814 - IAI47_00885 0.33 -0.8
186,841 - IAI47_00885 0.35 -0.4
186,841 - IAI47_00885 0.35 +0.4
186,865 + IAI47_00885 0.36 -0.7
186,866 - IAI47_00885 0.36 -0.5
186,866 - IAI47_00885 0.36 -0.2

Or see this region's nucleotide sequence