Experiment: D-Mannose 20 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS18940 and HMPREF1058_RS18935 are separated by 187 nucleotides HMPREF1058_RS18935 and HMPREF1058_RS18930 overlap by 26 nucleotides HMPREF1058_RS18930 and HMPREF1058_RS18925 are separated by 4 nucleotides
HMPREF1058_RS18940: HMPREF1058_RS18940 - hypothetical protein, at 44,445 to 44,846
_RS18940
HMPREF1058_RS18935: HMPREF1058_RS18935 - hypothetical protein, at 45,034 to 45,615
_RS18935
HMPREF1058_RS18930: HMPREF1058_RS18930 - hypothetical protein, at 45,590 to 46,603
_RS18930
HMPREF1058_RS18925: HMPREF1058_RS18925 - DEAD/DEAH box helicase, at 46,608 to 47,780
_RS18925
Position (kb) 45
46
47 Strain fitness (log2 ratio) -2
-1
0
1
2 at 44.943 kb on + strand at 45.044 kb on - strand at 45.282 kb on + strand, within HMPREF1058_RS18935 at 45.319 kb on + strand, within HMPREF1058_RS18935 at 45.326 kb on + strand, within HMPREF1058_RS18935 at 45.522 kb on + strand, within HMPREF1058_RS18935 at 45.952 kb on + strand, within HMPREF1058_RS18930 at 45.957 kb on + strand, within HMPREF1058_RS18930 at 45.960 kb on + strand, within HMPREF1058_RS18930 at 45.978 kb on + strand, within HMPREF1058_RS18930 at 46.067 kb on + strand, within HMPREF1058_RS18930 at 46.067 kb on + strand, within HMPREF1058_RS18930 at 46.069 kb on + strand, within HMPREF1058_RS18930 at 46.070 kb on - strand, within HMPREF1058_RS18930 at 46.298 kb on + strand, within HMPREF1058_RS18930 at 46.298 kb on + strand, within HMPREF1058_RS18930 at 46.336 kb on + strand, within HMPREF1058_RS18930 at 46.336 kb on + strand, within HMPREF1058_RS18930 at 46.336 kb on + strand, within HMPREF1058_RS18930 at 46.336 kb on + strand, within HMPREF1058_RS18930 at 46.537 kb on + strand at 46.538 kb on - strand at 46.658 kb on + strand at 46.748 kb on + strand, within HMPREF1058_RS18925 at 46.829 kb on + strand, within HMPREF1058_RS18925 at 46.863 kb on + strand, within HMPREF1058_RS18925 at 46.878 kb on + strand, within HMPREF1058_RS18925 at 46.934 kb on + strand, within HMPREF1058_RS18925 at 47.021 kb on + strand, within HMPREF1058_RS18925 at 47.222 kb on + strand, within HMPREF1058_RS18925 at 47.222 kb on + strand, within HMPREF1058_RS18925 at 47.244 kb on + strand, within HMPREF1058_RS18925 at 47.244 kb on + strand, within HMPREF1058_RS18925 at 47.335 kb on + strand, within HMPREF1058_RS18925 at 47.540 kb on + strand, within HMPREF1058_RS18925 at 47.540 kb on + strand, within HMPREF1058_RS18925
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 20 mM (C) remove 44,943 + -0.8 45,044 - +2.1 45,282 + HMPREF1058_RS18935 0.43 +1.0 45,319 + HMPREF1058_RS18935 0.49 -0.2 45,326 + HMPREF1058_RS18935 0.50 +0.6 45,522 + HMPREF1058_RS18935 0.84 +0.7 45,952 + HMPREF1058_RS18930 0.36 +0.4 45,957 + HMPREF1058_RS18930 0.36 -0.7 45,960 + HMPREF1058_RS18930 0.36 -0.2 45,978 + HMPREF1058_RS18930 0.38 +0.5 46,067 + HMPREF1058_RS18930 0.47 -0.3 46,067 + HMPREF1058_RS18930 0.47 +0.1 46,069 + HMPREF1058_RS18930 0.47 -1.0 46,070 - HMPREF1058_RS18930 0.47 +0.6 46,298 + HMPREF1058_RS18930 0.70 +1.4 46,298 + HMPREF1058_RS18930 0.70 +0.3 46,336 + HMPREF1058_RS18930 0.74 +0.6 46,336 + HMPREF1058_RS18930 0.74 -1.6 46,336 + HMPREF1058_RS18930 0.74 +2.1 46,336 + HMPREF1058_RS18930 0.74 +0.3 46,537 + -1.4 46,538 - -1.7 46,658 + -1.8 46,748 + HMPREF1058_RS18925 0.12 -1.9 46,829 + HMPREF1058_RS18925 0.19 -1.9 46,863 + HMPREF1058_RS18925 0.22 -1.0 46,878 + HMPREF1058_RS18925 0.23 +0.3 46,934 + HMPREF1058_RS18925 0.28 -0.7 47,021 + HMPREF1058_RS18925 0.35 +0.8 47,222 + HMPREF1058_RS18925 0.52 +0.1 47,222 + HMPREF1058_RS18925 0.52 -0.2 47,244 + HMPREF1058_RS18925 0.54 -0.4 47,244 + HMPREF1058_RS18925 0.54 -1.1 47,335 + HMPREF1058_RS18925 0.62 -1.6 47,540 + HMPREF1058_RS18925 0.79 -1.0 47,540 + HMPREF1058_RS18925 0.79 -1.2
Or see this region's nucleotide sequence