Experiment: D-Mannose 20 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS02765 and HMPREF1058_RS02760 are separated by 12 nucleotides HMPREF1058_RS02760 and HMPREF1058_RS02755 are separated by 709 nucleotides
HMPREF1058_RS02765: HMPREF1058_RS02765 - insulinase family protein, at 99,047 to 100,291
_RS02765
HMPREF1058_RS02760: HMPREF1058_RS02760 - peptidylprolyl isomerase, at 100,304 to 101,149
_RS02760
HMPREF1058_RS02755: HMPREF1058_RS02755 - translocation/assembly module TamB domain-containing protein, at 101,859 to 106,508
_RS02755
Position (kb) 100
101
102 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 99.415 kb on + strand, within HMPREF1058_RS02765 at 99.416 kb on - strand, within HMPREF1058_RS02765 at 99.417 kb on + strand, within HMPREF1058_RS02765 at 99.418 kb on - strand, within HMPREF1058_RS02765 at 99.438 kb on - strand, within HMPREF1058_RS02765 at 99.504 kb on - strand, within HMPREF1058_RS02765 at 99.520 kb on - strand, within HMPREF1058_RS02765 at 99.712 kb on + strand, within HMPREF1058_RS02765 at 99.713 kb on - strand, within HMPREF1058_RS02765 at 99.753 kb on + strand, within HMPREF1058_RS02765 at 99.847 kb on + strand, within HMPREF1058_RS02765 at 99.847 kb on + strand, within HMPREF1058_RS02765 at 99.847 kb on + strand, within HMPREF1058_RS02765 at 99.848 kb on - strand, within HMPREF1058_RS02765 at 99.849 kb on + strand, within HMPREF1058_RS02765 at 99.849 kb on + strand, within HMPREF1058_RS02765 at 99.976 kb on + strand, within HMPREF1058_RS02765 at 99.977 kb on - strand, within HMPREF1058_RS02765 at 100.032 kb on + strand, within HMPREF1058_RS02765 at 100.044 kb on - strand, within HMPREF1058_RS02765 at 100.197 kb on + strand at 100.228 kb on + strand at 100.245 kb on - strand at 100.313 kb on - strand at 100.313 kb on - strand at 100.370 kb on + strand at 100.388 kb on + strand at 100.423 kb on + strand, within HMPREF1058_RS02760 at 100.425 kb on + strand, within HMPREF1058_RS02760 at 100.465 kb on - strand, within HMPREF1058_RS02760 at 100.547 kb on + strand, within HMPREF1058_RS02760 at 100.547 kb on + strand, within HMPREF1058_RS02760 at 100.591 kb on - strand, within HMPREF1058_RS02760 at 100.593 kb on - strand, within HMPREF1058_RS02760 at 100.710 kb on + strand, within HMPREF1058_RS02760 at 100.710 kb on + strand, within HMPREF1058_RS02760 at 100.711 kb on - strand, within HMPREF1058_RS02760 at 100.936 kb on - strand, within HMPREF1058_RS02760 at 100.937 kb on + strand, within HMPREF1058_RS02760 at 100.938 kb on - strand, within HMPREF1058_RS02760 at 100.991 kb on - strand, within HMPREF1058_RS02760 at 100.992 kb on + strand, within HMPREF1058_RS02760 at 101.124 kb on - strand at 101.127 kb on - strand at 101.197 kb on + strand at 101.251 kb on + strand at 101.320 kb on - strand at 101.425 kb on - strand at 101.475 kb on + strand at 101.556 kb on + strand at 101.561 kb on + strand at 101.711 kb on - strand at 101.711 kb on - strand at 101.926 kb on + strand at 101.932 kb on + strand at 101.983 kb on + strand at 102.068 kb on - strand at 102.092 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 20 mM (C) remove 99,415 + HMPREF1058_RS02765 0.30 -1.0 99,416 - HMPREF1058_RS02765 0.30 +0.4 99,417 + HMPREF1058_RS02765 0.30 +1.3 99,418 - HMPREF1058_RS02765 0.30 +1.0 99,438 - HMPREF1058_RS02765 0.31 -0.3 99,504 - HMPREF1058_RS02765 0.37 +1.1 99,520 - HMPREF1058_RS02765 0.38 -1.5 99,712 + HMPREF1058_RS02765 0.53 +2.2 99,713 - HMPREF1058_RS02765 0.53 -0.2 99,753 + HMPREF1058_RS02765 0.57 +1.5 99,847 + HMPREF1058_RS02765 0.64 +1.9 99,847 + HMPREF1058_RS02765 0.64 +2.5 99,847 + HMPREF1058_RS02765 0.64 +2.1 99,848 - HMPREF1058_RS02765 0.64 +0.7 99,849 + HMPREF1058_RS02765 0.64 +1.5 99,849 + HMPREF1058_RS02765 0.64 +2.8 99,976 + HMPREF1058_RS02765 0.75 -1.4 99,977 - HMPREF1058_RS02765 0.75 -0.0 100,032 + HMPREF1058_RS02765 0.79 +2.0 100,044 - HMPREF1058_RS02765 0.80 +0.7 100,197 + +2.0 100,228 + +2.5 100,245 - +1.2 100,313 - -0.2 100,313 - -0.1 100,370 + +2.3 100,388 + +1.5 100,423 + HMPREF1058_RS02760 0.14 +2.1 100,425 + HMPREF1058_RS02760 0.14 +2.3 100,465 - HMPREF1058_RS02760 0.19 -1.1 100,547 + HMPREF1058_RS02760 0.29 +3.3 100,547 + HMPREF1058_RS02760 0.29 +2.0 100,591 - HMPREF1058_RS02760 0.34 -0.6 100,593 - HMPREF1058_RS02760 0.34 -0.3 100,710 + HMPREF1058_RS02760 0.48 +1.9 100,710 + HMPREF1058_RS02760 0.48 +0.7 100,711 - HMPREF1058_RS02760 0.48 +0.2 100,936 - HMPREF1058_RS02760 0.75 +0.7 100,937 + HMPREF1058_RS02760 0.75 +2.4 100,938 - HMPREF1058_RS02760 0.75 +0.1 100,991 - HMPREF1058_RS02760 0.81 -0.1 100,992 + HMPREF1058_RS02760 0.81 +1.6 101,124 - -0.4 101,127 - -0.3 101,197 + +2.2 101,251 + +1.3 101,320 - +0.7 101,425 - -0.4 101,475 + -0.0 101,556 + -0.1 101,561 + -2.1 101,711 - -1.4 101,711 - -2.3 101,926 + -0.3 101,932 + -0.6 101,983 + +1.0 102,068 - -2.1 102,092 + -1.6
Or see this region's nucleotide sequence