Strain Fitness in Rahnella sp. WP5 around EX31_RS24720

Experiment: L-Serine (N); ShewMM media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS24715 and EX31_RS24720 are separated by 207 nucleotidesEX31_RS24720 and EX31_RS24725 overlap by 4 nucleotides EX31_RS24715: EX31_RS24715 - L-serine ammonia-lyase, at 712,709 to 714,073 _RS24715 EX31_RS24720: EX31_RS24720 - CoA pyrophosphatase, at 714,281 to 714,883 _RS24720 EX31_RS24725: EX31_RS24725 - aminodeoxychorismate synthase component 1, at 714,880 to 716,256 _RS24725 Position (kb) 714 715Strain fitness (log2 ratio) -2 -1 0 1 2at 713.327 kb on - strand, within EX31_RS24715at 713.470 kb on + strand, within EX31_RS24715at 713.470 kb on + strand, within EX31_RS24715at 713.471 kb on - strand, within EX31_RS24715at 713.471 kb on - strand, within EX31_RS24715at 713.471 kb on - strand, within EX31_RS24715at 713.471 kb on - strand, within EX31_RS24715at 713.471 kb on - strand, within EX31_RS24715at 713.471 kb on - strand, within EX31_RS24715at 713.471 kb on - strand, within EX31_RS24715at 713.471 kb on - strand, within EX31_RS24715at 713.471 kb on - strand, within EX31_RS24715at 713.569 kb on - strand, within EX31_RS24715at 713.646 kb on + strand, within EX31_RS24715at 713.646 kb on + strand, within EX31_RS24715at 713.646 kb on + strand, within EX31_RS24715at 713.647 kb on - strand, within EX31_RS24715at 713.647 kb on - strand, within EX31_RS24715at 713.647 kb on - strand, within EX31_RS24715at 713.659 kb on - strand, within EX31_RS24715at 713.659 kb on - strand, within EX31_RS24715at 713.738 kb on - strand, within EX31_RS24715at 713.815 kb on + strand, within EX31_RS24715at 713.816 kb on - strand, within EX31_RS24715at 713.870 kb on + strand, within EX31_RS24715at 713.871 kb on - strand, within EX31_RS24715at 713.902 kb on + strand, within EX31_RS24715at 713.903 kb on - strand, within EX31_RS24715at 713.903 kb on - strand, within EX31_RS24715at 714.081 kb on - strandat 714.092 kb on - strandat 714.092 kb on - strandat 714.092 kb on - strandat 714.126 kb on + strandat 714.126 kb on + strandat 714.126 kb on + strandat 714.127 kb on - strandat 714.187 kb on + strandat 714.187 kb on + strandat 714.187 kb on + strandat 714.187 kb on + strandat 714.187 kb on + strandat 714.188 kb on - strandat 714.188 kb on - strandat 714.188 kb on - strandat 714.188 kb on - strandat 714.188 kb on - strandat 714.188 kb on - strandat 714.188 kb on - strandat 714.189 kb on + strandat 714.189 kb on + strandat 714.189 kb on + strandat 714.189 kb on + strandat 714.190 kb on - strandat 714.190 kb on - strandat 714.190 kb on - strandat 714.190 kb on - strandat 714.195 kb on - strandat 714.195 kb on - strandat 714.195 kb on - strandat 714.235 kb on + strandat 714.242 kb on - strandat 714.242 kb on - strandat 714.264 kb on + strandat 714.270 kb on - strandat 714.363 kb on + strand, within EX31_RS24720at 714.363 kb on + strand, within EX31_RS24720at 714.485 kb on + strand, within EX31_RS24720at 714.485 kb on + strand, within EX31_RS24720at 714.486 kb on - strand, within EX31_RS24720at 714.486 kb on - strand, within EX31_RS24720at 714.486 kb on - strand, within EX31_RS24720at 714.563 kb on + strand, within EX31_RS24720at 714.563 kb on + strand, within EX31_RS24720at 714.563 kb on + strand, within EX31_RS24720at 714.564 kb on - strand, within EX31_RS24720at 714.564 kb on - strand, within EX31_RS24720at 714.564 kb on - strand, within EX31_RS24720at 714.564 kb on - strand, within EX31_RS24720at 714.564 kb on - strand, within EX31_RS24720at 714.564 kb on - strand, within EX31_RS24720at 714.564 kb on - strand, within EX31_RS24720at 714.565 kb on + strand, within EX31_RS24720at 714.565 kb on + strand, within EX31_RS24720at 714.565 kb on + strand, within EX31_RS24720at 714.565 kb on + strand, within EX31_RS24720at 714.565 kb on + strand, within EX31_RS24720at 714.565 kb on + strand, within EX31_RS24720at 714.565 kb on + strand, within EX31_RS24720at 714.565 kb on + strand, within EX31_RS24720at 714.566 kb on - strand, within EX31_RS24720at 714.566 kb on - strand, within EX31_RS24720at 714.566 kb on - strand, within EX31_RS24720at 714.566 kb on - strand, within EX31_RS24720at 714.566 kb on - strand, within EX31_RS24720at 714.566 kb on - strand, within EX31_RS24720at 714.566 kb on - strand, within EX31_RS24720at 714.566 kb on - strand, within EX31_RS24720at 714.566 kb on - strand, within EX31_RS24720at 714.566 kb on - strand, within EX31_RS24720at 714.566 kb on - strand, within EX31_RS24720at 714.625 kb on + strand, within EX31_RS24720at 714.626 kb on - strand, within EX31_RS24720at 714.686 kb on - strand, within EX31_RS24720at 714.855 kb on - strandat 714.855 kb on - strandat 714.890 kb on - strandat 714.890 kb on - strandat 714.942 kb on - strandat 715.064 kb on + strand, within EX31_RS24725at 715.065 kb on - strand, within EX31_RS24725at 715.065 kb on - strand, within EX31_RS24725at 715.065 kb on - strand, within EX31_RS24725at 715.334 kb on - strand, within EX31_RS24725at 715.334 kb on - strand, within EX31_RS24725at 715.642 kb on - strand, within EX31_RS24725at 715.642 kb on - strand, within EX31_RS24725at 715.644 kb on - strand, within EX31_RS24725at 715.644 kb on - strand, within EX31_RS24725at 715.644 kb on - strand, within EX31_RS24725at 715.644 kb on - strand, within EX31_RS24725at 715.672 kb on + strand, within EX31_RS24725at 715.690 kb on - strand, within EX31_RS24725at 715.690 kb on - strand, within EX31_RS24725at 715.711 kb on + strand, within EX31_RS24725at 715.712 kb on - strand, within EX31_RS24725at 715.712 kb on - strand, within EX31_RS24725at 715.762 kb on + strand, within EX31_RS24725at 715.763 kb on - strand, within EX31_RS24725at 715.807 kb on + strand, within EX31_RS24725at 715.808 kb on - strand, within EX31_RS24725at 715.808 kb on - strand, within EX31_RS24725at 715.838 kb on + strand, within EX31_RS24725at 715.839 kb on - strand, within EX31_RS24725at 715.839 kb on - strand, within EX31_RS24725at 715.839 kb on - strand, within EX31_RS24725

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N); ShewMM media; shaking
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713,327 - EX31_RS24715 0.45 -0.5
713,470 + EX31_RS24715 0.56 -0.4
713,470 + EX31_RS24715 0.56 -0.1
713,471 - EX31_RS24715 0.56 +0.8
713,471 - EX31_RS24715 0.56 -0.7
713,471 - EX31_RS24715 0.56 -0.4
713,471 - EX31_RS24715 0.56 -0.1
713,471 - EX31_RS24715 0.56 +0.3
713,471 - EX31_RS24715 0.56 -2.1
713,471 - EX31_RS24715 0.56 -0.9
713,471 - EX31_RS24715 0.56 -0.9
713,471 - EX31_RS24715 0.56 -0.0
713,569 - EX31_RS24715 0.63 -1.4
713,646 + EX31_RS24715 0.69 -0.4
713,646 + EX31_RS24715 0.69 -2.2
713,646 + EX31_RS24715 0.69 -1.4
713,647 - EX31_RS24715 0.69 -0.4
713,647 - EX31_RS24715 0.69 -0.7
713,647 - EX31_RS24715 0.69 -0.7
713,659 - EX31_RS24715 0.70 -2.6
713,659 - EX31_RS24715 0.70 -1.4
713,738 - EX31_RS24715 0.75 +1.8
713,815 + EX31_RS24715 0.81 -0.5
713,816 - EX31_RS24715 0.81 +1.0
713,870 + EX31_RS24715 0.85 +0.7
713,871 - EX31_RS24715 0.85 -2.0
713,902 + EX31_RS24715 0.87 -2.2
713,903 - EX31_RS24715 0.87 +0.8
713,903 - EX31_RS24715 0.87 -0.5
714,081 - -1.5
714,092 - +1.5
714,092 - +0.5
714,092 - -0.0
714,126 + -0.5
714,126 + -0.4
714,126 + +0.4
714,127 - -0.9
714,187 + +1.8
714,187 + +0.2
714,187 + +0.4
714,187 + +0.5
714,187 + +0.1
714,188 - -0.1
714,188 - +0.1
714,188 - +0.2
714,188 - -0.1
714,188 - +1.5
714,188 - +0.3
714,188 - +1.6
714,189 + -2.1
714,189 + +0.6
714,189 + -0.8
714,189 + -1.4
714,190 - +0.2
714,190 - +1.1
714,190 - +0.4
714,190 - +2.5
714,195 - +0.9
714,195 - +0.7
714,195 - +0.8
714,235 + +0.8
714,242 - +1.7
714,242 - +1.5
714,264 + -0.6
714,270 - +0.8
714,363 + EX31_RS24720 0.14 +0.6
714,363 + EX31_RS24720 0.14 -0.0
714,485 + EX31_RS24720 0.34 -0.4
714,485 + EX31_RS24720 0.34 +0.2
714,486 - EX31_RS24720 0.34 +1.4
714,486 - EX31_RS24720 0.34 +0.7
714,486 - EX31_RS24720 0.34 -0.0
714,563 + EX31_RS24720 0.47 +1.8
714,563 + EX31_RS24720 0.47 -1.4
714,563 + EX31_RS24720 0.47 +0.1
714,564 - EX31_RS24720 0.47 +1.4
714,564 - EX31_RS24720 0.47 +0.6
714,564 - EX31_RS24720 0.47 +1.1
714,564 - EX31_RS24720 0.47 +1.0
714,564 - EX31_RS24720 0.47 +0.8
714,564 - EX31_RS24720 0.47 +0.3
714,564 - EX31_RS24720 0.47 +1.2
714,565 + EX31_RS24720 0.47 -0.1
714,565 + EX31_RS24720 0.47 +1.1
714,565 + EX31_RS24720 0.47 +0.4
714,565 + EX31_RS24720 0.47 +1.2
714,565 + EX31_RS24720 0.47 -0.8
714,565 + EX31_RS24720 0.47 +0.9
714,565 + EX31_RS24720 0.47 -0.7
714,565 + EX31_RS24720 0.47 +1.2
714,566 - EX31_RS24720 0.47 -1.7
714,566 - EX31_RS24720 0.47 +0.2
714,566 - EX31_RS24720 0.47 +1.0
714,566 - EX31_RS24720 0.47 -0.3
714,566 - EX31_RS24720 0.47 -0.0
714,566 - EX31_RS24720 0.47 +1.0
714,566 - EX31_RS24720 0.47 -0.2
714,566 - EX31_RS24720 0.47 +0.7
714,566 - EX31_RS24720 0.47 +0.6
714,566 - EX31_RS24720 0.47 +1.1
714,566 - EX31_RS24720 0.47 +0.2
714,625 + EX31_RS24720 0.57 -0.0
714,626 - EX31_RS24720 0.57 +0.0
714,686 - EX31_RS24720 0.67 +1.5
714,855 - -1.3
714,855 - +1.0
714,890 - +0.2
714,890 - +0.3
714,942 - +0.7
715,064 + EX31_RS24725 0.13 +1.3
715,065 - EX31_RS24725 0.13 -1.5
715,065 - EX31_RS24725 0.13 +1.1
715,065 - EX31_RS24725 0.13 -1.3
715,334 - EX31_RS24725 0.33 -0.8
715,334 - EX31_RS24725 0.33 +1.1
715,642 - EX31_RS24725 0.55 +0.0
715,642 - EX31_RS24725 0.55 +0.3
715,644 - EX31_RS24725 0.55 +0.2
715,644 - EX31_RS24725 0.55 +0.6
715,644 - EX31_RS24725 0.55 +0.0
715,644 - EX31_RS24725 0.55 -0.4
715,672 + EX31_RS24725 0.58 +1.5
715,690 - EX31_RS24725 0.59 +0.8
715,690 - EX31_RS24725 0.59 +1.4
715,711 + EX31_RS24725 0.60 +1.6
715,712 - EX31_RS24725 0.60 -1.4
715,712 - EX31_RS24725 0.60 +1.8
715,762 + EX31_RS24725 0.64 +1.3
715,763 - EX31_RS24725 0.64 +1.0
715,807 + EX31_RS24725 0.67 +0.5
715,808 - EX31_RS24725 0.67 +0.3
715,808 - EX31_RS24725 0.67 +0.1
715,838 + EX31_RS24725 0.70 +1.6
715,839 - EX31_RS24725 0.70 +0.2
715,839 - EX31_RS24725 0.70 +0.2
715,839 - EX31_RS24725 0.70 +0.2

Or see this region's nucleotide sequence