Strain Fitness in Rahnella sp. WP5 around EX31_RS09755

Experiment: L-Serine (N); ShewMM media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS09750 and EX31_RS09755 overlap by 8 nucleotidesEX31_RS09755 and EX31_RS09760 are separated by 101 nucleotides EX31_RS09750: EX31_RS09750 - sugar ABC transporter permease, at 154,008 to 155,207 _RS09750 EX31_RS09755: EX31_RS09755 - xylose ABC transporter ATP-binding protein, at 155,200 to 156,705 _RS09755 EX31_RS09760: EX31_RS09760 - D-xylose ABC transporter substrate-binding protein, at 156,807 to 157,799 _RS09760 Position (kb) 155 156 157Strain fitness (log2 ratio) -2 -1 0 1 2 3at 154.380 kb on - strand, within EX31_RS09750at 154.385 kb on - strand, within EX31_RS09750at 154.385 kb on - strand, within EX31_RS09750at 154.385 kb on - strand, within EX31_RS09750at 154.385 kb on - strand, within EX31_RS09750at 154.385 kb on - strand, within EX31_RS09750at 154.388 kb on + strand, within EX31_RS09750at 154.492 kb on + strand, within EX31_RS09750at 154.638 kb on - strand, within EX31_RS09750at 154.663 kb on + strand, within EX31_RS09750at 154.664 kb on - strand, within EX31_RS09750at 154.664 kb on - strand, within EX31_RS09750at 154.664 kb on - strand, within EX31_RS09750at 154.675 kb on - strand, within EX31_RS09750at 154.675 kb on - strand, within EX31_RS09750at 154.675 kb on - strand, within EX31_RS09750at 154.675 kb on - strand, within EX31_RS09750at 154.793 kb on - strand, within EX31_RS09750at 154.834 kb on - strand, within EX31_RS09750at 154.912 kb on - strand, within EX31_RS09750at 155.024 kb on + strand, within EX31_RS09750at 155.024 kb on + strand, within EX31_RS09750at 155.024 kb on + strand, within EX31_RS09750at 155.025 kb on - strand, within EX31_RS09750at 155.038 kb on + strand, within EX31_RS09750at 155.038 kb on + strand, within EX31_RS09750at 155.038 kb on + strand, within EX31_RS09750at 155.039 kb on - strand, within EX31_RS09750at 155.039 kb on - strand, within EX31_RS09750at 155.039 kb on - strand, within EX31_RS09750at 155.039 kb on - strand, within EX31_RS09750at 155.039 kb on - strand, within EX31_RS09750at 155.039 kb on - strand, within EX31_RS09750at 155.039 kb on - strand, within EX31_RS09750at 155.072 kb on + strand, within EX31_RS09750at 155.072 kb on + strand, within EX31_RS09750at 155.118 kb on - strandat 155.207 kb on + strandat 155.207 kb on + strandat 155.207 kb on + strandat 155.207 kb on + strandat 155.208 kb on - strandat 155.208 kb on - strandat 155.208 kb on - strandat 155.208 kb on - strandat 155.208 kb on - strandat 155.251 kb on + strandat 155.257 kb on - strandat 155.353 kb on - strand, within EX31_RS09755at 155.353 kb on - strand, within EX31_RS09755at 155.353 kb on - strand, within EX31_RS09755at 155.461 kb on + strand, within EX31_RS09755at 155.640 kb on + strand, within EX31_RS09755at 155.641 kb on - strand, within EX31_RS09755at 155.641 kb on - strand, within EX31_RS09755at 155.905 kb on - strand, within EX31_RS09755at 155.947 kb on + strand, within EX31_RS09755at 155.948 kb on - strand, within EX31_RS09755at 155.950 kb on + strand, within EX31_RS09755at 155.950 kb on + strand, within EX31_RS09755at 155.950 kb on + strand, within EX31_RS09755at 155.951 kb on - strand, within EX31_RS09755at 155.951 kb on - strand, within EX31_RS09755at 156.135 kb on - strand, within EX31_RS09755at 156.135 kb on - strand, within EX31_RS09755at 156.135 kb on - strand, within EX31_RS09755at 156.139 kb on - strand, within EX31_RS09755at 156.325 kb on - strand, within EX31_RS09755at 156.597 kb on + strandat 156.654 kb on + strandat 156.657 kb on + strandat 156.658 kb on - strandat 156.658 kb on - strandat 156.658 kb on - strandat 156.892 kb on + strandat 156.893 kb on - strandat 157.041 kb on - strand, within EX31_RS09760at 157.120 kb on - strand, within EX31_RS09760at 157.354 kb on + strand, within EX31_RS09760at 157.354 kb on + strand, within EX31_RS09760at 157.354 kb on + strand, within EX31_RS09760at 157.430 kb on - strand, within EX31_RS09760at 157.430 kb on - strand, within EX31_RS09760at 157.466 kb on - strand, within EX31_RS09760at 157.531 kb on + strand, within EX31_RS09760at 157.571 kb on + strand, within EX31_RS09760

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N); ShewMM media; shaking
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154,380 - EX31_RS09750 0.31 +0.3
154,385 - EX31_RS09750 0.31 +2.3
154,385 - EX31_RS09750 0.31 -0.3
154,385 - EX31_RS09750 0.31 +1.0
154,385 - EX31_RS09750 0.31 +1.7
154,385 - EX31_RS09750 0.31 +1.4
154,388 + EX31_RS09750 0.32 -0.1
154,492 + EX31_RS09750 0.40 +0.1
154,638 - EX31_RS09750 0.53 +0.3
154,663 + EX31_RS09750 0.55 -0.1
154,664 - EX31_RS09750 0.55 -1.3
154,664 - EX31_RS09750 0.55 +0.2
154,664 - EX31_RS09750 0.55 -0.0
154,675 - EX31_RS09750 0.56 +0.1
154,675 - EX31_RS09750 0.56 -0.3
154,675 - EX31_RS09750 0.56 +1.5
154,675 - EX31_RS09750 0.56 -1.3
154,793 - EX31_RS09750 0.65 +0.5
154,834 - EX31_RS09750 0.69 +0.6
154,912 - EX31_RS09750 0.75 +1.1
155,024 + EX31_RS09750 0.85 -0.3
155,024 + EX31_RS09750 0.85 +0.1
155,024 + EX31_RS09750 0.85 +0.9
155,025 - EX31_RS09750 0.85 -0.9
155,038 + EX31_RS09750 0.86 +0.9
155,038 + EX31_RS09750 0.86 +0.7
155,038 + EX31_RS09750 0.86 -0.4
155,039 - EX31_RS09750 0.86 +1.0
155,039 - EX31_RS09750 0.86 -0.3
155,039 - EX31_RS09750 0.86 +1.3
155,039 - EX31_RS09750 0.86 -1.3
155,039 - EX31_RS09750 0.86 -2.0
155,039 - EX31_RS09750 0.86 -1.0
155,039 - EX31_RS09750 0.86 -0.6
155,072 + EX31_RS09750 0.89 +0.5
155,072 + EX31_RS09750 0.89 +2.7
155,118 - +1.3
155,207 + -0.6
155,207 + +0.5
155,207 + +0.2
155,207 + -0.8
155,208 - +0.0
155,208 - -1.5
155,208 - +1.0
155,208 - +0.6
155,208 - +1.0
155,251 + -0.7
155,257 - +1.2
155,353 - EX31_RS09755 0.10 +0.1
155,353 - EX31_RS09755 0.10 -1.1
155,353 - EX31_RS09755 0.10 +0.3
155,461 + EX31_RS09755 0.17 -0.4
155,640 + EX31_RS09755 0.29 -0.5
155,641 - EX31_RS09755 0.29 +0.4
155,641 - EX31_RS09755 0.29 +0.4
155,905 - EX31_RS09755 0.47 -0.9
155,947 + EX31_RS09755 0.50 +0.2
155,948 - EX31_RS09755 0.50 +1.3
155,950 + EX31_RS09755 0.50 +1.0
155,950 + EX31_RS09755 0.50 -0.3
155,950 + EX31_RS09755 0.50 +0.3
155,951 - EX31_RS09755 0.50 -0.4
155,951 - EX31_RS09755 0.50 -0.6
156,135 - EX31_RS09755 0.62 +3.0
156,135 - EX31_RS09755 0.62 -1.6
156,135 - EX31_RS09755 0.62 +0.7
156,139 - EX31_RS09755 0.62 +1.3
156,325 - EX31_RS09755 0.75 +0.2
156,597 + +1.1
156,654 + -0.0
156,657 + -0.3
156,658 - -0.3
156,658 - +0.5
156,658 - +0.1
156,892 + -0.6
156,893 - +0.7
157,041 - EX31_RS09760 0.24 +1.0
157,120 - EX31_RS09760 0.32 -0.8
157,354 + EX31_RS09760 0.55 +0.7
157,354 + EX31_RS09760 0.55 +0.1
157,354 + EX31_RS09760 0.55 -0.5
157,430 - EX31_RS09760 0.63 -1.6
157,430 - EX31_RS09760 0.63 +0.5
157,466 - EX31_RS09760 0.66 +0.7
157,531 + EX31_RS09760 0.73 -0.4
157,571 + EX31_RS09760 0.77 -0.3

Or see this region's nucleotide sequence