Strain Fitness in Rahnella sp. WP5 around EX31_RS06320

Experiment: L-Serine (N); ShewMM media; shaking

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS06315 and EX31_RS06320 overlap by 8 nucleotidesEX31_RS06320 and EX31_RS06325 are separated by 74 nucleotidesEX31_RS06325 and EX31_RS06330 overlap by 1 nucleotides EX31_RS06315: EX31_RS06315 - DNA topoisomerase III, at 25,575 to 27,527 _RS06315 EX31_RS06320: EX31_RS06320 - YnjH family protein, at 27,520 to 27,834 _RS06320 EX31_RS06325: EX31_RS06325 - pyrimidine (deoxy)nucleoside triphosphate diphosphatase, at 27,909 to 28,310 _RS06325 EX31_RS06330: EX31_RS06330 - exodeoxyribonuclease III, at 28,310 to 29,119 _RS06330 Position (kb) 27 28Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 26.555 kb on + strand, within EX31_RS06315at 26.555 kb on + strand, within EX31_RS06315at 26.555 kb on + strand, within EX31_RS06315at 26.680 kb on + strand, within EX31_RS06315at 26.680 kb on + strand, within EX31_RS06315at 26.680 kb on + strand, within EX31_RS06315at 26.680 kb on + strand, within EX31_RS06315at 26.750 kb on + strand, within EX31_RS06315at 26.751 kb on - strand, within EX31_RS06315at 26.805 kb on + strand, within EX31_RS06315at 26.805 kb on + strand, within EX31_RS06315at 26.806 kb on - strand, within EX31_RS06315at 27.050 kb on + strand, within EX31_RS06315at 27.051 kb on - strand, within EX31_RS06315at 27.059 kb on + strand, within EX31_RS06315at 27.059 kb on + strand, within EX31_RS06315at 27.059 kb on + strand, within EX31_RS06315at 27.059 kb on + strand, within EX31_RS06315at 27.059 kb on + strand, within EX31_RS06315at 27.059 kb on + strand, within EX31_RS06315at 27.060 kb on - strand, within EX31_RS06315at 27.104 kb on + strand, within EX31_RS06315at 27.142 kb on + strand, within EX31_RS06315at 27.216 kb on + strand, within EX31_RS06315at 27.217 kb on - strand, within EX31_RS06315at 27.217 kb on - strand, within EX31_RS06315at 27.218 kb on + strand, within EX31_RS06315at 27.218 kb on + strand, within EX31_RS06315at 27.219 kb on - strand, within EX31_RS06315at 27.219 kb on - strand, within EX31_RS06315at 27.477 kb on - strandat 27.495 kb on - strandat 27.621 kb on + strand, within EX31_RS06320at 27.678 kb on + strand, within EX31_RS06320at 27.678 kb on + strand, within EX31_RS06320at 27.708 kb on + strand, within EX31_RS06320at 27.708 kb on + strand, within EX31_RS06320at 27.708 kb on + strand, within EX31_RS06320at 27.709 kb on - strand, within EX31_RS06320at 27.709 kb on - strand, within EX31_RS06320at 27.712 kb on + strand, within EX31_RS06320at 27.712 kb on + strand, within EX31_RS06320at 27.712 kb on + strand, within EX31_RS06320at 27.712 kb on + strand, within EX31_RS06320at 27.712 kb on + strand, within EX31_RS06320at 27.727 kb on + strand, within EX31_RS06320at 27.843 kb on + strandat 27.895 kb on - strandat 27.895 kb on - strandat 27.899 kb on - strandat 28.026 kb on - strand, within EX31_RS06325at 28.072 kb on - strand, within EX31_RS06325at 28.091 kb on + strand, within EX31_RS06325at 28.092 kb on - strand, within EX31_RS06325at 28.158 kb on + strand, within EX31_RS06325at 28.158 kb on + strand, within EX31_RS06325at 28.159 kb on - strand, within EX31_RS06325at 28.159 kb on - strand, within EX31_RS06325at 28.254 kb on + strand, within EX31_RS06325at 28.255 kb on - strand, within EX31_RS06325at 28.311 kb on + strandat 28.311 kb on + strandat 28.312 kb on - strandat 28.312 kb on - strandat 28.312 kb on - strandat 28.312 kb on - strandat 28.378 kb on - strandat 28.378 kb on - strandat 28.378 kb on - strandat 28.439 kb on - strand, within EX31_RS06330at 28.496 kb on - strand, within EX31_RS06330at 28.661 kb on - strand, within EX31_RS06330at 28.661 kb on - strand, within EX31_RS06330at 28.795 kb on - strand, within EX31_RS06330

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N); ShewMM media; shaking
remove
26,555 + EX31_RS06315 0.50 +0.5
26,555 + EX31_RS06315 0.50 -0.5
26,555 + EX31_RS06315 0.50 -0.6
26,680 + EX31_RS06315 0.57 +1.1
26,680 + EX31_RS06315 0.57 -0.2
26,680 + EX31_RS06315 0.57 -0.7
26,680 + EX31_RS06315 0.57 +1.6
26,750 + EX31_RS06315 0.60 +2.2
26,751 - EX31_RS06315 0.60 +0.3
26,805 + EX31_RS06315 0.63 -0.2
26,805 + EX31_RS06315 0.63 +0.4
26,806 - EX31_RS06315 0.63 -1.2
27,050 + EX31_RS06315 0.76 -0.4
27,051 - EX31_RS06315 0.76 -0.4
27,059 + EX31_RS06315 0.76 -0.8
27,059 + EX31_RS06315 0.76 +0.6
27,059 + EX31_RS06315 0.76 -0.0
27,059 + EX31_RS06315 0.76 -0.8
27,059 + EX31_RS06315 0.76 -0.8
27,059 + EX31_RS06315 0.76 +0.1
27,060 - EX31_RS06315 0.76 +2.0
27,104 + EX31_RS06315 0.78 +2.6
27,142 + EX31_RS06315 0.80 +0.6
27,216 + EX31_RS06315 0.84 +0.1
27,217 - EX31_RS06315 0.84 -0.4
27,217 - EX31_RS06315 0.84 +0.2
27,218 + EX31_RS06315 0.84 -0.4
27,218 + EX31_RS06315 0.84 +0.7
27,219 - EX31_RS06315 0.84 +0.3
27,219 - EX31_RS06315 0.84 -1.4
27,477 - -1.0
27,495 - -0.0
27,621 + EX31_RS06320 0.32 -1.2
27,678 + EX31_RS06320 0.50 -0.4
27,678 + EX31_RS06320 0.50 -0.6
27,708 + EX31_RS06320 0.60 +2.4
27,708 + EX31_RS06320 0.60 -1.3
27,708 + EX31_RS06320 0.60 +0.1
27,709 - EX31_RS06320 0.60 -0.9
27,709 - EX31_RS06320 0.60 +0.1
27,712 + EX31_RS06320 0.61 -0.2
27,712 + EX31_RS06320 0.61 -0.4
27,712 + EX31_RS06320 0.61 +0.7
27,712 + EX31_RS06320 0.61 -0.0
27,712 + EX31_RS06320 0.61 -0.3
27,727 + EX31_RS06320 0.66 -0.4
27,843 + -0.2
27,895 - -0.3
27,895 - +1.4
27,899 - -0.1
28,026 - EX31_RS06325 0.29 -1.4
28,072 - EX31_RS06325 0.41 -0.6
28,091 + EX31_RS06325 0.45 +0.2
28,092 - EX31_RS06325 0.46 -0.2
28,158 + EX31_RS06325 0.62 +3.6
28,158 + EX31_RS06325 0.62 -1.4
28,159 - EX31_RS06325 0.62 -0.7
28,159 - EX31_RS06325 0.62 +0.6
28,254 + EX31_RS06325 0.86 -2.0
28,255 - EX31_RS06325 0.86 -0.4
28,311 + +0.3
28,311 + +0.6
28,312 - +0.6
28,312 - +1.6
28,312 - +0.1
28,312 - -0.4
28,378 - +0.6
28,378 - +1.6
28,378 - -1.8
28,439 - EX31_RS06330 0.16 -1.4
28,496 - EX31_RS06330 0.23 -2.1
28,661 - EX31_RS06330 0.43 +0.3
28,661 - EX31_RS06330 0.43 +4.4
28,795 - EX31_RS06330 0.60 -0.0

Or see this region's nucleotide sequence