Strain Fitness in Rahnella sp. WP5 around EX31_RS02415

Experiment: L-Serine (N); ShewMM media; shaking

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS02405 and EX31_RS02410 are separated by 319 nucleotidesEX31_RS02410 and EX31_RS02415 are separated by 285 nucleotidesEX31_RS02415 and EX31_RS02420 overlap by 20 nucleotides EX31_RS02405: EX31_RS02405 - MFS transporter, at 511,273 to 512,484 _RS02405 EX31_RS02410: EX31_RS02410 - multidrug DMT transporter, at 512,804 to 513,139 _RS02410 EX31_RS02415: EX31_RS02415 - hypothetical protein, at 513,425 to 513,727 _RS02415 EX31_RS02420: EX31_RS02420 - type III PLP-dependent enzyme, at 513,708 to 515,015 _RS02420 Position (kb) 513 514Strain fitness (log2 ratio) -2 -1 0 1 2 3at 512.532 kb on - strandat 512.597 kb on - strandat 512.604 kb on - strandat 512.619 kb on - strandat 512.619 kb on - strandat 512.683 kb on + strandat 512.683 kb on + strandat 512.684 kb on - strandat 512.684 kb on - strandat 512.684 kb on - strandat 512.689 kb on + strandat 512.690 kb on - strandat 512.717 kb on + strandat 512.728 kb on + strandat 512.821 kb on + strandat 512.821 kb on + strandat 512.822 kb on - strandat 512.827 kb on - strandat 512.827 kb on - strandat 512.842 kb on + strand, within EX31_RS02410at 512.843 kb on - strand, within EX31_RS02410at 512.843 kb on - strand, within EX31_RS02410at 512.901 kb on + strand, within EX31_RS02410at 512.901 kb on + strand, within EX31_RS02410at 513.128 kb on + strandat 513.140 kb on - strandat 513.140 kb on - strandat 513.140 kb on - strandat 513.140 kb on - strandat 513.140 kb on - strandat 513.140 kb on - strandat 513.140 kb on - strandat 513.162 kb on + strandat 513.193 kb on + strandat 513.199 kb on - strandat 513.285 kb on - strandat 513.344 kb on - strandat 513.388 kb on - strandat 513.430 kb on + strandat 513.455 kb on - strandat 513.457 kb on - strand, within EX31_RS02415at 513.457 kb on - strand, within EX31_RS02415at 513.491 kb on - strand, within EX31_RS02415at 513.982 kb on + strand, within EX31_RS02420at 514.007 kb on + strand, within EX31_RS02420at 514.007 kb on + strand, within EX31_RS02420at 514.008 kb on - strand, within EX31_RS02420at 514.033 kb on - strand, within EX31_RS02420at 514.118 kb on + strand, within EX31_RS02420at 514.119 kb on - strand, within EX31_RS02420at 514.141 kb on + strand, within EX31_RS02420at 514.301 kb on + strand, within EX31_RS02420at 514.301 kb on + strand, within EX31_RS02420at 514.301 kb on + strand, within EX31_RS02420at 514.301 kb on + strand, within EX31_RS02420at 514.302 kb on - strand, within EX31_RS02420at 514.302 kb on - strand, within EX31_RS02420at 514.302 kb on - strand, within EX31_RS02420at 514.305 kb on + strand, within EX31_RS02420at 514.305 kb on + strand, within EX31_RS02420at 514.305 kb on + strand, within EX31_RS02420at 514.305 kb on + strand, within EX31_RS02420at 514.306 kb on - strand, within EX31_RS02420at 514.512 kb on + strand, within EX31_RS02420at 514.512 kb on + strand, within EX31_RS02420at 514.512 kb on + strand, within EX31_RS02420at 514.512 kb on + strand, within EX31_RS02420at 514.513 kb on - strand, within EX31_RS02420at 514.535 kb on + strand, within EX31_RS02420at 514.535 kb on + strand, within EX31_RS02420at 514.697 kb on + strand, within EX31_RS02420

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N); ShewMM media; shaking
remove
512,532 - +2.0
512,597 - -0.6
512,604 - +1.7
512,619 - +0.6
512,619 - +0.3
512,683 + -0.6
512,683 + +0.2
512,684 - +0.0
512,684 - +0.4
512,684 - +1.0
512,689 + +0.4
512,690 - +0.4
512,717 + +0.9
512,728 + +2.0
512,821 + -1.9
512,821 + +0.2
512,822 - +1.6
512,827 - +0.8
512,827 - -0.4
512,842 + EX31_RS02410 0.11 +1.3
512,843 - EX31_RS02410 0.12 +0.4
512,843 - EX31_RS02410 0.12 +1.4
512,901 + EX31_RS02410 0.29 +0.8
512,901 + EX31_RS02410 0.29 +1.0
513,128 + -0.1
513,140 - +0.5
513,140 - +1.0
513,140 - +0.1
513,140 - -0.1
513,140 - +0.4
513,140 - +0.4
513,140 - +2.0
513,162 + -2.0
513,193 + +1.0
513,199 - +0.9
513,285 - +0.4
513,344 - +0.1
513,388 - +0.7
513,430 + +0.1
513,455 - -0.6
513,457 - EX31_RS02415 0.11 +3.6
513,457 - EX31_RS02415 0.11 -0.8
513,491 - EX31_RS02415 0.22 +1.4
513,982 + EX31_RS02420 0.21 -0.0
514,007 + EX31_RS02420 0.23 +0.5
514,007 + EX31_RS02420 0.23 +1.4
514,008 - EX31_RS02420 0.23 -0.8
514,033 - EX31_RS02420 0.25 +0.7
514,118 + EX31_RS02420 0.31 +1.0
514,119 - EX31_RS02420 0.31 +0.0
514,141 + EX31_RS02420 0.33 +2.0
514,301 + EX31_RS02420 0.45 +2.0
514,301 + EX31_RS02420 0.45 +0.1
514,301 + EX31_RS02420 0.45 -0.5
514,301 + EX31_RS02420 0.45 -0.2
514,302 - EX31_RS02420 0.45 +1.4
514,302 - EX31_RS02420 0.45 +0.4
514,302 - EX31_RS02420 0.45 -0.6
514,305 + EX31_RS02420 0.46 +0.2
514,305 + EX31_RS02420 0.46 +0.8
514,305 + EX31_RS02420 0.46 +1.6
514,305 + EX31_RS02420 0.46 +0.2
514,306 - EX31_RS02420 0.46 -0.6
514,512 + EX31_RS02420 0.61 -0.3
514,512 + EX31_RS02420 0.61 -1.4
514,512 + EX31_RS02420 0.61 +0.4
514,512 + EX31_RS02420 0.61 +2.0
514,513 - EX31_RS02420 0.62 -0.2
514,535 + EX31_RS02420 0.63 +1.1
514,535 + EX31_RS02420 0.63 -0.2
514,697 + EX31_RS02420 0.76 +0.4

Or see this region's nucleotide sequence