Strain Fitness in Rahnella sp. WP5 around EX31_RS01250

Experiment: L-Serine (N); ShewMM media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS01245 and EX31_RS01250 are separated by 220 nucleotidesEX31_RS01250 and EX31_RS01255 are separated by 134 nucleotidesEX31_RS01255 and EX31_RS01260 are separated by 52 nucleotides EX31_RS01245: EX31_RS01245 - ferric-rhodotorulic acid/ferric-coprogen receptor FhuE, at 276,659 to 278,869 _RS01245 EX31_RS01250: EX31_RS01250 - M24 family metallopeptidase, at 279,090 to 280,484 _RS01250 EX31_RS01255: EX31_RS01255 - Crp/Fnr family transcriptional regulator, at 280,619 to 281,251 _RS01255 EX31_RS01260: EX31_RS01260 - YebG family protein, at 281,304 to 281,699 _RS01260 Position (kb) 279 280 281Strain fitness (log2 ratio) -2 -1 0 1 2 3at 278.272 kb on + strand, within EX31_RS01245at 278.424 kb on + strand, within EX31_RS01245at 278.425 kb on - strand, within EX31_RS01245at 278.425 kb on - strand, within EX31_RS01245at 278.434 kb on + strand, within EX31_RS01245at 278.434 kb on + strand, within EX31_RS01245at 278.435 kb on - strand, within EX31_RS01245at 278.442 kb on + strand, within EX31_RS01245at 278.443 kb on - strand, within EX31_RS01245at 278.443 kb on - strand, within EX31_RS01245at 278.460 kb on + strand, within EX31_RS01245at 278.460 kb on + strand, within EX31_RS01245at 278.461 kb on - strand, within EX31_RS01245at 278.509 kb on + strand, within EX31_RS01245at 278.509 kb on + strand, within EX31_RS01245at 278.807 kb on - strandat 278.847 kb on + strandat 278.848 kb on - strandat 278.848 kb on - strandat 278.848 kb on - strandat 278.848 kb on - strandat 278.869 kb on + strandat 278.870 kb on - strandat 278.870 kb on - strandat 278.912 kb on + strandat 278.917 kb on - strandat 278.917 kb on - strandat 278.917 kb on - strandat 279.005 kb on + strandat 279.013 kb on + strandat 279.040 kb on + strandat 279.116 kb on + strandat 279.213 kb on - strandat 279.293 kb on + strand, within EX31_RS01250at 279.294 kb on - strand, within EX31_RS01250at 279.336 kb on - strand, within EX31_RS01250at 279.336 kb on - strand, within EX31_RS01250at 279.339 kb on - strand, within EX31_RS01250at 279.388 kb on + strand, within EX31_RS01250at 279.388 kb on + strand, within EX31_RS01250at 279.452 kb on - strand, within EX31_RS01250at 279.452 kb on - strand, within EX31_RS01250at 279.452 kb on - strand, within EX31_RS01250at 279.534 kb on + strand, within EX31_RS01250at 279.547 kb on + strand, within EX31_RS01250at 279.548 kb on - strand, within EX31_RS01250at 279.548 kb on - strand, within EX31_RS01250at 279.595 kb on - strand, within EX31_RS01250at 279.619 kb on + strand, within EX31_RS01250at 279.620 kb on - strand, within EX31_RS01250at 279.671 kb on + strand, within EX31_RS01250at 279.780 kb on + strand, within EX31_RS01250at 279.893 kb on + strand, within EX31_RS01250at 279.893 kb on + strand, within EX31_RS01250at 279.894 kb on - strand, within EX31_RS01250at 280.225 kb on + strand, within EX31_RS01250at 280.225 kb on + strand, within EX31_RS01250at 280.225 kb on + strand, within EX31_RS01250at 280.225 kb on + strand, within EX31_RS01250at 280.226 kb on - strand, within EX31_RS01250at 280.226 kb on - strand, within EX31_RS01250at 280.226 kb on - strand, within EX31_RS01250at 280.226 kb on - strand, within EX31_RS01250at 280.226 kb on - strand, within EX31_RS01250at 280.226 kb on - strand, within EX31_RS01250at 280.294 kb on + strand, within EX31_RS01250at 280.327 kb on + strand, within EX31_RS01250at 280.327 kb on + strand, within EX31_RS01250at 280.328 kb on - strand, within EX31_RS01250at 280.433 kb on - strandat 280.433 kb on - strandat 280.466 kb on - strandat 280.520 kb on - strandat 280.582 kb on - strandat 280.582 kb on - strandat 280.614 kb on + strandat 280.737 kb on - strand, within EX31_RS01255at 280.784 kb on - strand, within EX31_RS01255at 280.960 kb on - strand, within EX31_RS01255at 281.007 kb on - strand, within EX31_RS01255at 281.007 kb on - strand, within EX31_RS01255at 281.120 kb on + strand, within EX31_RS01255at 281.192 kb on + strandat 281.192 kb on + strandat 281.212 kb on + strandat 281.212 kb on + strandat 281.317 kb on - strandat 281.317 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N); ShewMM media; shaking
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278,272 + EX31_RS01245 0.73 +1.0
278,424 + EX31_RS01245 0.80 +0.4
278,425 - EX31_RS01245 0.80 +1.2
278,425 - EX31_RS01245 0.80 +1.1
278,434 + EX31_RS01245 0.80 +0.1
278,434 + EX31_RS01245 0.80 -1.9
278,435 - EX31_RS01245 0.80 +0.7
278,442 + EX31_RS01245 0.81 +0.1
278,443 - EX31_RS01245 0.81 -0.4
278,443 - EX31_RS01245 0.81 +0.5
278,460 + EX31_RS01245 0.81 +1.5
278,460 + EX31_RS01245 0.81 -0.1
278,461 - EX31_RS01245 0.82 -0.6
278,509 + EX31_RS01245 0.84 +2.1
278,509 + EX31_RS01245 0.84 +0.8
278,807 - +0.1
278,847 + -1.4
278,848 - +0.7
278,848 - -1.2
278,848 - +0.1
278,848 - +0.1
278,869 + +0.6
278,870 - +0.5
278,870 - -0.4
278,912 + +0.1
278,917 - +0.6
278,917 - +0.2
278,917 - -0.2
279,005 + +0.7
279,013 + +0.7
279,040 + -0.4
279,116 + -1.5
279,213 - -0.4
279,293 + EX31_RS01250 0.15 -0.0
279,294 - EX31_RS01250 0.15 +1.5
279,336 - EX31_RS01250 0.18 +2.1
279,336 - EX31_RS01250 0.18 -0.4
279,339 - EX31_RS01250 0.18 +0.8
279,388 + EX31_RS01250 0.21 -0.9
279,388 + EX31_RS01250 0.21 +2.1
279,452 - EX31_RS01250 0.26 -0.3
279,452 - EX31_RS01250 0.26 +0.4
279,452 - EX31_RS01250 0.26 +0.8
279,534 + EX31_RS01250 0.32 -0.3
279,547 + EX31_RS01250 0.33 +1.1
279,548 - EX31_RS01250 0.33 +0.1
279,548 - EX31_RS01250 0.33 +0.8
279,595 - EX31_RS01250 0.36 +1.2
279,619 + EX31_RS01250 0.38 +0.4
279,620 - EX31_RS01250 0.38 +0.5
279,671 + EX31_RS01250 0.42 +0.9
279,780 + EX31_RS01250 0.49 -0.4
279,893 + EX31_RS01250 0.58 -0.0
279,893 + EX31_RS01250 0.58 +1.1
279,894 - EX31_RS01250 0.58 +0.1
280,225 + EX31_RS01250 0.81 -0.1
280,225 + EX31_RS01250 0.81 -0.9
280,225 + EX31_RS01250 0.81 -0.4
280,225 + EX31_RS01250 0.81 +1.0
280,226 - EX31_RS01250 0.81 -0.3
280,226 - EX31_RS01250 0.81 +0.5
280,226 - EX31_RS01250 0.81 +0.5
280,226 - EX31_RS01250 0.81 +0.5
280,226 - EX31_RS01250 0.81 +0.2
280,226 - EX31_RS01250 0.81 +0.8
280,294 + EX31_RS01250 0.86 +0.5
280,327 + EX31_RS01250 0.89 -0.2
280,327 + EX31_RS01250 0.89 +0.5
280,328 - EX31_RS01250 0.89 -0.1
280,433 - +0.8
280,433 - +0.5
280,466 - +3.1
280,520 - -0.0
280,582 - +1.0
280,582 - -0.9
280,614 + +1.7
280,737 - EX31_RS01255 0.19 -0.5
280,784 - EX31_RS01255 0.26 -0.9
280,960 - EX31_RS01255 0.54 +0.5
281,007 - EX31_RS01255 0.61 -1.9
281,007 - EX31_RS01255 0.61 -0.1
281,120 + EX31_RS01255 0.79 -0.1
281,192 + -0.4
281,192 + -0.9
281,212 + -0.3
281,212 + +1.2
281,317 - -0.4
281,317 - -1.5

Or see this region's nucleotide sequence