Experiment: R2A with nitrate 100 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS21440 and CA265_RS21445 are separated by 381 nucleotides CA265_RS21445 and CA265_RS21450 are separated by 82 nucleotides
CA265_RS21440: CA265_RS21440 - peptidylprolyl isomerase, at 5,283,615 to 5,284,343
_RS21440
CA265_RS21445: CA265_RS21445 - exodeoxyribonuclease III, at 5,284,725 to 5,285,492
_RS21445
CA265_RS21450: CA265_RS21450 - imidazolonepropionase, at 5,285,575 to 5,286,822
_RS21450
Position (kb)
5284
5285
5286 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5283.730 kb on + strand, within CA265_RS21440 at 5283.733 kb on - strand, within CA265_RS21440 at 5283.759 kb on - strand, within CA265_RS21440 at 5283.809 kb on + strand, within CA265_RS21440 at 5283.810 kb on - strand, within CA265_RS21440 at 5283.828 kb on - strand, within CA265_RS21440 at 5283.855 kb on - strand, within CA265_RS21440 at 5283.896 kb on + strand, within CA265_RS21440 at 5283.900 kb on + strand, within CA265_RS21440 at 5283.902 kb on + strand, within CA265_RS21440 at 5284.108 kb on + strand, within CA265_RS21440 at 5284.111 kb on - strand, within CA265_RS21440 at 5284.111 kb on - strand, within CA265_RS21440 at 5284.112 kb on + strand, within CA265_RS21440 at 5284.112 kb on + strand, within CA265_RS21440 at 5284.139 kb on - strand, within CA265_RS21440 at 5284.168 kb on + strand, within CA265_RS21440 at 5284.169 kb on - strand, within CA265_RS21440 at 5284.184 kb on + strand, within CA265_RS21440 at 5284.261 kb on + strand, within CA265_RS21440 at 5284.289 kb on - strand at 5284.322 kb on + strand at 5284.341 kb on + strand at 5284.362 kb on + strand at 5284.403 kb on - strand at 5284.407 kb on + strand at 5284.408 kb on - strand at 5284.490 kb on - strand at 5284.560 kb on + strand at 5284.564 kb on + strand at 5284.565 kb on - strand at 5284.565 kb on - strand at 5284.565 kb on - strand at 5284.565 kb on - strand at 5284.571 kb on - strand at 5284.672 kb on + strand at 5284.673 kb on - strand at 5284.673 kb on - strand at 5284.673 kb on - strand at 5284.719 kb on - strand at 5284.723 kb on - strand at 5284.800 kb on - strand at 5284.832 kb on - strand, within CA265_RS21445 at 5284.997 kb on + strand, within CA265_RS21445 at 5285.053 kb on - strand, within CA265_RS21445 at 5285.053 kb on - strand, within CA265_RS21445 at 5285.055 kb on - strand, within CA265_RS21445 at 5285.124 kb on + strand, within CA265_RS21445 at 5285.125 kb on - strand, within CA265_RS21445 at 5285.158 kb on + strand, within CA265_RS21445 at 5285.180 kb on + strand, within CA265_RS21445 at 5285.181 kb on - strand, within CA265_RS21445 at 5285.294 kb on + strand, within CA265_RS21445 at 5285.310 kb on - strand, within CA265_RS21445 at 5285.328 kb on + strand, within CA265_RS21445 at 5285.479 kb on + strand at 5285.598 kb on + strand at 5285.598 kb on + strand at 5285.814 kb on + strand, within CA265_RS21450 at 5285.926 kb on - strand, within CA265_RS21450 at 5286.075 kb on + strand, within CA265_RS21450 at 5286.148 kb on - strand, within CA265_RS21450 at 5286.166 kb on + strand, within CA265_RS21450 at 5286.166 kb on + strand, within CA265_RS21450 at 5286.320 kb on + strand, within CA265_RS21450 at 5286.354 kb on - strand, within CA265_RS21450 at 5286.373 kb on - strand, within CA265_RS21450 at 5286.373 kb on - strand, within CA265_RS21450 at 5286.418 kb on - strand, within CA265_RS21450 at 5286.449 kb on + strand, within CA265_RS21450 at 5286.450 kb on - strand, within CA265_RS21450 at 5286.455 kb on + strand, within CA265_RS21450 at 5286.480 kb on - strand, within CA265_RS21450 at 5286.483 kb on + strand, within CA265_RS21450 at 5286.484 kb on - strand, within CA265_RS21450
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with nitrate 100 mM remove 5,283,730 + CA265_RS21440 0.16 -0.0 5,283,733 - CA265_RS21440 0.16 -0.5 5,283,759 - CA265_RS21440 0.20 -0.9 5,283,809 + CA265_RS21440 0.27 +1.1 5,283,810 - CA265_RS21440 0.27 +0.3 5,283,828 - CA265_RS21440 0.29 -0.7 5,283,855 - CA265_RS21440 0.33 +0.1 5,283,896 + CA265_RS21440 0.39 +0.2 5,283,900 + CA265_RS21440 0.39 -1.6 5,283,902 + CA265_RS21440 0.39 -0.7 5,284,108 + CA265_RS21440 0.68 -0.7 5,284,111 - CA265_RS21440 0.68 +1.5 5,284,111 - CA265_RS21440 0.68 +0.4 5,284,112 + CA265_RS21440 0.68 -0.7 5,284,112 + CA265_RS21440 0.68 +0.1 5,284,139 - CA265_RS21440 0.72 +1.3 5,284,168 + CA265_RS21440 0.76 -1.6 5,284,169 - CA265_RS21440 0.76 +0.2 5,284,184 + CA265_RS21440 0.78 -0.2 5,284,261 + CA265_RS21440 0.89 -2.7 5,284,289 - -0.2 5,284,322 + +0.1 5,284,341 + +1.1 5,284,362 + +1.4 5,284,403 - +1.2 5,284,407 + +0.2 5,284,408 - +0.4 5,284,490 - +0.0 5,284,560 + +0.1 5,284,564 + -0.4 5,284,565 - +0.4 5,284,565 - -0.9 5,284,565 - +0.9 5,284,565 - -0.3 5,284,571 - +0.2 5,284,672 + -0.5 5,284,673 - +0.1 5,284,673 - +0.5 5,284,673 - +0.3 5,284,719 - +0.6 5,284,723 - +0.7 5,284,800 - +0.7 5,284,832 - CA265_RS21445 0.14 -1.1 5,284,997 + CA265_RS21445 0.35 +0.8 5,285,053 - CA265_RS21445 0.43 +0.7 5,285,053 - CA265_RS21445 0.43 +0.3 5,285,055 - CA265_RS21445 0.43 -0.2 5,285,124 + CA265_RS21445 0.52 +0.1 5,285,125 - CA265_RS21445 0.52 +0.2 5,285,158 + CA265_RS21445 0.56 +0.4 5,285,180 + CA265_RS21445 0.59 -0.5 5,285,181 - CA265_RS21445 0.59 +0.6 5,285,294 + CA265_RS21445 0.74 -0.0 5,285,310 - CA265_RS21445 0.76 +0.6 5,285,328 + CA265_RS21445 0.79 +0.9 5,285,479 + +0.6 5,285,598 + +0.0 5,285,598 + -0.1 5,285,814 + CA265_RS21450 0.19 -0.1 5,285,926 - CA265_RS21450 0.28 +0.5 5,286,075 + CA265_RS21450 0.40 -0.1 5,286,148 - CA265_RS21450 0.46 +0.6 5,286,166 + CA265_RS21450 0.47 +1.8 5,286,166 + CA265_RS21450 0.47 +0.2 5,286,320 + CA265_RS21450 0.60 +1.1 5,286,354 - CA265_RS21450 0.62 +0.1 5,286,373 - CA265_RS21450 0.64 +0.0 5,286,373 - CA265_RS21450 0.64 +1.0 5,286,418 - CA265_RS21450 0.68 -0.4 5,286,449 + CA265_RS21450 0.70 +0.5 5,286,450 - CA265_RS21450 0.70 -0.5 5,286,455 + CA265_RS21450 0.71 +0.8 5,286,480 - CA265_RS21450 0.73 -0.2 5,286,483 + CA265_RS21450 0.73 -1.0 5,286,484 - CA265_RS21450 0.73 -0.8
Or see this region's nucleotide sequence