Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS09725

Experiment: R2A with nitrate 100 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrate 100 mM
2,396,938	+		CA265_RS09720	0.67	+0.0
2,397,146	+		CA265_RS09720	0.75	-0.9
2,397,265	+		CA265_RS09720	0.80	+0.8
2,397,277	-		CA265_RS09720	0.80	-0.5
2,397,286	+		CA265_RS09720	0.81	+1.1
2,397,413	-		CA265_RS09720	0.86	+1.3
2,397,437	+		CA265_RS09720	0.87	+0.7
2,397,441	+		CA265_RS09720	0.87	-0.5
2,397,470	+		CA265_RS09720	0.88	-0.3
2,397,515	+				-0.1
2,397,516	-				+0.2
2,397,535	+				+0.3
2,397,660	-				+0.3
2,397,768	+				+0.0
2,397,781	-				+0.1
2,397,789	+				-0.1
2,397,790	-				-0.5
2,397,811	+				-0.0
2,397,839	+				-1.1
2,397,865	-				+0.4
2,397,929	+				+0.6
2,397,930	-				-0.0
2,397,930	-				+0.6
2,397,944	+				+0.2
2,397,949	+				+0.3
2,397,950	-				-0.3
2,397,970	+				+0.9
2,397,971	-				+0.1
2,397,984	-				+1.2
2,398,012	-				+0.6
2,398,030	+				+0.6
2,398,031	-				-0.0
2,398,087	-				+0.6
2,398,087	-				+0.4
2,398,089	+				+0.0
2,398,089	+				+1.0
2,398,172	+				+0.9
2,398,204	-				-0.7
2,398,208	+				-0.1
2,398,209	-				+0.4
2,398,301	-		CA265_RS09725	0.12	-0.2
2,398,400	+		CA265_RS09725	0.15	-0.6
2,398,401	-		CA265_RS09725	0.15	+0.6
2,398,535	-				-0.1
2,398,596	+		CA265_RS09725	0.21	+1.8
2,398,596	+		CA265_RS09725	0.21	+0.4
2,398,597	-		CA265_RS09725	0.21	+0.3
2,398,600	+		CA265_RS09725	0.21	+0.0
2,398,601	-		CA265_RS09725	0.21	-0.5
2,398,626	-		CA265_RS09725	0.22	+0.1
2,398,656	+		CA265_RS09725	0.23	+1.0
2,398,745	+		CA265_RS09725	0.26	+0.9
2,398,745	+		CA265_RS09725	0.26	-0.4
2,398,745	+		CA265_RS09725	0.26	-0.1
2,398,745	+		CA265_RS09725	0.26	+0.3
2,398,756	+		CA265_RS09725	0.26	-0.3
2,398,757	-		CA265_RS09725	0.26	-0.8
2,398,757	-		CA265_RS09725	0.26	+0.3
2,398,823	+		CA265_RS09725	0.28	+0.6
2,398,823	+		CA265_RS09725	0.28	-0.1
2,398,861	-		CA265_RS09725	0.29	+0.8
2,398,871	+		CA265_RS09725	0.30	+0.7
2,398,904	-		CA265_RS09725	0.31	-1.0
2,398,946	-		CA265_RS09725	0.32	-0.0
2,398,989	-		CA265_RS09725	0.33	+0.2
2,398,991	-		CA265_RS09725	0.33	-0.0
2,399,019	-		CA265_RS09725	0.34	-0.8
2,399,037	-		CA265_RS09725	0.35	+0.0
2,399,072	+		CA265_RS09725	0.36	-0.3
2,399,093	+		CA265_RS09725	0.36	+0.7
2,399,093	+		CA265_RS09725	0.36	+0.8
2,399,093	+		CA265_RS09725	0.36	-0.6
2,399,218	+		CA265_RS09725	0.40	+0.8
2,399,218	+		CA265_RS09725	0.40	+1.0
2,399,219	-		CA265_RS09725	0.40	+0.1
2,399,219	-		CA265_RS09725	0.40	+0.1
2,399,219	-		CA265_RS09725	0.40	+0.2
2,399,219	-		CA265_RS09725	0.40	+0.1
2,399,255	-		CA265_RS09725	0.42	-0.9
2,399,256	+		CA265_RS09725	0.42	+0.4
2,399,256	+		CA265_RS09725	0.42	+0.4
2,399,315	+		CA265_RS09725	0.43	+0.5
2,399,316	-		CA265_RS09725	0.43	+0.3
2,399,338	+		CA265_RS09725	0.44	+0.3
2,399,343	-		CA265_RS09725	0.44	-0.3
2,399,351	-		CA265_RS09725	0.45	+0.6
2,399,353	+		CA265_RS09725	0.45	-0.2
2,399,354	-		CA265_RS09725	0.45	+0.2
2,399,405	-		CA265_RS09725	0.46	+0.6
2,399,432	-		CA265_RS09725	0.47	+1.5
2,399,462	+		CA265_RS09725	0.48	+0.3
2,399,500	+		CA265_RS09725	0.49	+0.7
2,399,503	-		CA265_RS09725	0.49	+0.1
2,399,525	+		CA265_RS09725	0.50	+0.6
2,399,603	+		CA265_RS09725	0.52	-0.1
2,399,613	-		CA265_RS09725	0.53	-0.0
2,399,617	+		CA265_RS09725	0.53	+1.2
2,399,618	-		CA265_RS09725	0.53	+0.5
2,399,618	-		CA265_RS09725	0.53	+1.2
2,399,619	+		CA265_RS09725	0.53	+0.1
2,399,653	-		CA265_RS09725	0.54	+0.2
2,399,653	-		CA265_RS09725	0.54	-0.5
2,399,749	+		CA265_RS09725	0.57	+0.5
2,399,750	-		CA265_RS09725	0.57	-0.4
2,399,822	-		CA265_RS09725	0.59	+0.3
2,399,826	+		CA265_RS09725	0.59	+0.1
2,399,826	+		CA265_RS09725	0.59	+0.4
2,399,963	+		CA265_RS09725	0.64	+0.8
2,400,056	+		CA265_RS09725	0.67	+0.7
2,400,063	+		CA265_RS09725	0.67	-0.9
2,400,068	-		CA265_RS09725	0.67	-0.9
2,400,078	-		CA265_RS09725	0.67	+0.5
2,400,106	+		CA265_RS09725	0.68	+0.6
2,400,107	-		CA265_RS09725	0.68	-0.6
2,400,107	-		CA265_RS09725	0.68	+1.1
2,400,107	-		CA265_RS09725	0.68	+0.7
2,400,165	-		CA265_RS09725	0.70	+0.3
2,400,168	-		CA265_RS09725	0.70	+0.3
2,400,168	-		CA265_RS09725	0.70	+0.5
2,400,260	+		CA265_RS09725	0.73	+0.0
2,400,260	+		CA265_RS09725	0.73	+0.4
2,400,261	-		CA265_RS09725	0.73	-0.3
2,400,288	+		CA265_RS09725	0.74	+0.4
2,400,309	+		CA265_RS09725	0.75	+0.2
2,400,309	+		CA265_RS09725	0.75	-0.5
2,400,339	-		CA265_RS09725	0.76	+0.3
2,400,419	+		CA265_RS09725	0.78	+0.2
2,400,420	-		CA265_RS09725	0.78	+0.3
2,400,458	+		CA265_RS09725	0.79	-0.2
2,400,458	+		CA265_RS09725	0.79	+0.1
2,400,459	-		CA265_RS09725	0.79	+1.3
2,400,469	+		CA265_RS09725	0.80	+0.2
2,400,495	+		CA265_RS09725	0.80	+0.1
2,400,570	+		CA265_RS09725	0.83	+0.8
2,400,571	-		CA265_RS09725	0.83	+0.7
2,400,602	+		CA265_RS09725	0.84	+0.7
2,400,618	+		CA265_RS09725	0.84	+0.7
2,400,619	-		CA265_RS09725	0.84	+0.5
2,400,634	-		CA265_RS09725	0.85	+0.6
2,400,675	-		CA265_RS09725	0.86	+0.5
2,400,675	-		CA265_RS09725	0.86	+0.8
2,400,708	-		CA265_RS09725	0.87	+0.2
2,400,715	+		CA265_RS09725	0.87	+0.3
2,400,773	+		CA265_RS09725	0.89	+0.6
2,400,791	-		CA265_RS09725	0.90	-0.0
2,400,818	-				+0.1
2,400,890	+				+0.4
2,400,890	+				+0.6
2,400,999	-				-1.5
2,400,999	-				+0.8
2,401,000	+				+0.7
2,401,001	-				+0.4
2,401,003	-				+0.9
2,401,045	-				+0.8
2,401,045	-				+1.0
2,401,047	+				+1.2
2,401,212	-				+0.2
2,401,227	+				+0.2
2,401,264	-		CA265_RS09730	0.13	+0.8
2,401,312	+		CA265_RS09730	0.19	+0.1
2,401,317	-		CA265_RS09730	0.19	-0.1
2,401,317	-		CA265_RS09730	0.19	-0.3
2,401,339	-		CA265_RS09730	0.22	+0.7
2,401,339	-		CA265_RS09730	0.22	+1.0
2,401,413	+		CA265_RS09730	0.31	+0.5
2,401,436	+		CA265_RS09730	0.33	-1.7
2,401,436	+		CA265_RS09730	0.33	-0.1
2,401,502	+		CA265_RS09730	0.41	-0.7
2,401,504	+		CA265_RS09730	0.41	+0.7
2,401,504	+		CA265_RS09730	0.41	-0.1
2,401,505	-		CA265_RS09730	0.41	-0.7
2,401,555	+		CA265_RS09730	0.47	-2.1
2,401,577	+		CA265_RS09730	0.50	-0.5
2,401,635	-		CA265_RS09730	0.57	-0.3
2,401,645	-		CA265_RS09730	0.58	-0.5
2,401,645	-		CA265_RS09730	0.58	-0.1
2,401,650	-		CA265_RS09730	0.58	+0.6
2,401,674	+		CA265_RS09730	0.61	-0.0
2,401,696	-		CA265_RS09730	0.64	+0.8
2,401,698	-		CA265_RS09730	0.64	+0.1
2,401,698	-		CA265_RS09730	0.64	+1.2
2,401,702	-		CA265_RS09730	0.64	-0.2
2,401,747	-		CA265_RS09730	0.70	+0.0
2,401,758	-		CA265_RS09730	0.71	+0.1
2,401,785	-		CA265_RS09730	0.74	+0.2
2,401,792	+		CA265_RS09730	0.75	-0.3
2,401,813	+		CA265_RS09730	0.77	-0.5
2,401,816	-		CA265_RS09730	0.78	+0.4
2,401,896	+		CA265_RS09730	0.87	+0.0
2,401,942	-				+0.5
2,402,014	-				+0.6
2,402,039	+				-0.3