Experiment: R2A with nitrate 100 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS00755 and CA265_RS00760 are separated by 71 nucleotides CA265_RS00760 and CA265_RS00765 are separated by 128 nucleotides CA265_RS00765 and CA265_RS00770 are separated by 32 nucleotides CA265_RS00770 and CA265_RS00775 are separated by 120 nucleotides
CA265_RS00755: CA265_RS00755 - 5-dehydro-4-deoxy-D-glucuronate isomerase, at 182,918 to 183,757
_RS00755
CA265_RS00760: CA265_RS00760 - 2-deoxy-D-gluconate 3-dehydrogenase, at 183,829 to 184,593
_RS00760
CA265_RS00765: CA265_RS00765 - hypothetical protein, at 184,722 to 185,567
_RS00765
CA265_RS00770: CA265_RS00770 - hypothetical protein, at 185,600 to 186,004
_RS00770
CA265_RS00775: CA265_RS00775 - carbonic anhydrase, at 186,125 to 186,751
_RS00775
Position (kb) 184
185
186 Strain fitness (log2 ratio) -1
0
1
2 at 183.856 kb on - strand at 183.908 kb on + strand, within CA265_RS00760 at 183.909 kb on - strand, within CA265_RS00760 at 184.156 kb on + strand, within CA265_RS00760 at 184.157 kb on - strand, within CA265_RS00760 at 184.198 kb on - strand, within CA265_RS00760 at 184.269 kb on - strand, within CA265_RS00760 at 184.269 kb on - strand, within CA265_RS00760 at 184.379 kb on + strand, within CA265_RS00760 at 184.399 kb on + strand, within CA265_RS00760 at 184.400 kb on - strand, within CA265_RS00760 at 184.402 kb on - strand, within CA265_RS00760 at 184.416 kb on + strand, within CA265_RS00760 at 184.416 kb on + strand, within CA265_RS00760 at 184.455 kb on + strand, within CA265_RS00760 at 184.456 kb on - strand, within CA265_RS00760 at 184.457 kb on + strand, within CA265_RS00760 at 184.457 kb on + strand, within CA265_RS00760 at 184.458 kb on - strand, within CA265_RS00760 at 184.468 kb on - strand, within CA265_RS00760 at 184.518 kb on - strand at 184.543 kb on + strand at 184.591 kb on + strand at 184.592 kb on - strand at 184.592 kb on - strand at 184.680 kb on - strand at 186.085 kb on - strand at 186.113 kb on + strand at 186.114 kb on - strand at 186.114 kb on - strand at 186.126 kb on + strand at 186.127 kb on - strand at 186.129 kb on + strand at 186.139 kb on - strand at 186.284 kb on - strand at 186.304 kb on + strand, within CA265_RS00775 at 186.304 kb on + strand, within CA265_RS00775 at 186.312 kb on - strand, within CA265_RS00775 at 186.324 kb on + strand, within CA265_RS00775 at 186.325 kb on - strand at 186.377 kb on + strand, within CA265_RS00775 at 186.378 kb on - strand, within CA265_RS00775 at 186.411 kb on - strand, within CA265_RS00775 at 186.479 kb on - strand, within CA265_RS00775 at 186.524 kb on + strand, within CA265_RS00775 at 186.524 kb on + strand, within CA265_RS00775 at 186.524 kb on + strand, within CA265_RS00775 at 186.530 kb on + strand, within CA265_RS00775
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with nitrate 100 mM remove 183,856 - +0.3 183,908 + CA265_RS00760 0.10 -0.4 183,909 - CA265_RS00760 0.10 -0.0 184,156 + CA265_RS00760 0.43 -0.2 184,157 - CA265_RS00760 0.43 -0.1 184,198 - CA265_RS00760 0.48 -0.5 184,269 - CA265_RS00760 0.58 +0.7 184,269 - CA265_RS00760 0.58 -0.5 184,379 + CA265_RS00760 0.72 -0.2 184,399 + CA265_RS00760 0.75 -0.4 184,400 - CA265_RS00760 0.75 -0.1 184,402 - CA265_RS00760 0.75 -1.5 184,416 + CA265_RS00760 0.77 +0.3 184,416 + CA265_RS00760 0.77 +0.4 184,455 + CA265_RS00760 0.82 +0.3 184,456 - CA265_RS00760 0.82 +0.3 184,457 + CA265_RS00760 0.82 -0.8 184,457 + CA265_RS00760 0.82 -0.7 184,458 - CA265_RS00760 0.82 +0.7 184,468 - CA265_RS00760 0.84 +0.4 184,518 - +0.5 184,543 + +0.4 184,591 + -1.5 184,592 - -0.4 184,592 - -0.2 184,680 - +0.0 186,085 - -1.6 186,113 + +0.3 186,114 - -0.8 186,114 - +0.5 186,126 + -1.4 186,127 - +0.6 186,129 + -0.5 186,139 - -0.2 186,284 - +2.1 186,304 + CA265_RS00775 0.29 +0.1 186,304 + CA265_RS00775 0.29 -0.5 186,312 - CA265_RS00775 0.30 -0.3 186,324 + CA265_RS00775 0.32 -0.2 186,325 - +0.1 186,377 + CA265_RS00775 0.40 -0.2 186,378 - CA265_RS00775 0.40 -0.8 186,411 - CA265_RS00775 0.46 -0.3 186,479 - CA265_RS00775 0.56 +0.8 186,524 + CA265_RS00775 0.64 -0.4 186,524 + CA265_RS00775 0.64 -0.6 186,524 + CA265_RS00775 0.64 +0.1 186,530 + CA265_RS00775 0.65 -0.2
Or see this region's nucleotide sequence