Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_920

Experiment: Sisomicin 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_919 and Ac3H11_920 are separated by 131 nucleotidesAc3H11_920 and Ac3H11_921 are separated by 128 nucleotides Ac3H11_919 - Transcriptional regulator, LysR family, at 32,465 to 33,412 _919 Ac3H11_920 - FMN-dependent NADH-azoreductase, at 33,544 to 34,188 _920 Ac3H11_921 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 34,317 to 36,647 _921 Position (kb) 33 34 35Strain fitness (log2 ratio) -2 -1 0 1at 32.679 kb on + strand, within Ac3H11_919at 32.679 kb on + strand, within Ac3H11_919at 32.679 kb on + strand, within Ac3H11_919at 32.679 kb on + strand, within Ac3H11_919at 32.679 kb on + strand, within Ac3H11_919at 32.679 kb on + strand, within Ac3H11_919at 32.679 kb on + strand, within Ac3H11_919at 32.679 kb on + strand, within Ac3H11_919at 32.679 kb on + strand, within Ac3H11_919at 32.679 kb on + strand, within Ac3H11_919at 32.679 kb on + strand, within Ac3H11_919at 32.680 kb on - strand, within Ac3H11_919at 32.680 kb on - strand, within Ac3H11_919at 32.680 kb on - strand, within Ac3H11_919at 32.680 kb on - strand, within Ac3H11_919at 32.680 kb on - strand, within Ac3H11_919at 32.680 kb on - strand, within Ac3H11_919at 32.680 kb on - strand, within Ac3H11_919at 32.680 kb on - strand, within Ac3H11_919at 32.722 kb on - strand, within Ac3H11_919at 32.722 kb on - strand, within Ac3H11_919at 32.722 kb on - strand, within Ac3H11_919at 32.722 kb on - strand, within Ac3H11_919at 32.751 kb on + strand, within Ac3H11_919at 32.751 kb on + strand, within Ac3H11_919at 32.751 kb on + strand, within Ac3H11_919at 32.891 kb on + strand, within Ac3H11_919at 32.891 kb on + strand, within Ac3H11_919at 32.892 kb on - strand, within Ac3H11_919at 32.892 kb on - strand, within Ac3H11_919at 32.892 kb on - strand, within Ac3H11_919at 33.219 kb on + strand, within Ac3H11_919at 33.220 kb on - strand, within Ac3H11_919at 33.220 kb on - strand, within Ac3H11_919at 33.387 kb on + strandat 33.387 kb on + strandat 33.387 kb on + strandat 33.387 kb on + strandat 33.387 kb on + strandat 33.387 kb on + strandat 33.387 kb on + strandat 33.388 kb on - strandat 33.388 kb on - strandat 33.388 kb on - strandat 33.388 kb on - strandat 33.412 kb on + strandat 33.412 kb on + strandat 33.412 kb on + strandat 33.412 kb on + strandat 33.413 kb on - strandat 33.413 kb on - strandat 33.413 kb on - strandat 33.413 kb on - strandat 33.433 kb on + strandat 33.658 kb on + strand, within Ac3H11_920at 33.658 kb on + strand, within Ac3H11_920at 33.658 kb on + strand, within Ac3H11_920at 33.826 kb on + strand, within Ac3H11_920at 33.826 kb on + strand, within Ac3H11_920at 33.826 kb on + strand, within Ac3H11_920at 33.826 kb on + strand, within Ac3H11_920at 33.826 kb on + strand, within Ac3H11_920at 33.827 kb on - strand, within Ac3H11_920at 33.827 kb on - strand, within Ac3H11_920at 33.827 kb on - strand, within Ac3H11_920at 33.898 kb on + strand, within Ac3H11_920at 33.898 kb on + strand, within Ac3H11_920at 33.899 kb on - strand, within Ac3H11_920at 33.970 kb on + strand, within Ac3H11_920at 33.970 kb on + strand, within Ac3H11_920at 33.970 kb on + strand, within Ac3H11_920at 33.971 kb on - strand, within Ac3H11_920at 34.015 kb on + strand, within Ac3H11_920at 34.015 kb on + strand, within Ac3H11_920at 34.015 kb on + strand, within Ac3H11_920at 34.016 kb on - strand, within Ac3H11_920at 34.016 kb on - strand, within Ac3H11_920at 34.016 kb on - strand, within Ac3H11_920at 34.016 kb on - strand, within Ac3H11_920at 34.172 kb on + strandat 34.173 kb on - strandat 34.173 kb on - strandat 34.186 kb on + strandat 34.186 kb on + strandat 34.186 kb on + strandat 34.186 kb on + strandat 34.187 kb on - strandat 34.187 kb on - strandat 34.187 kb on - strandat 34.319 kb on - strandat 34.477 kb on - strandat 34.702 kb on + strand, within Ac3H11_921at 34.702 kb on + strand, within Ac3H11_921at 34.702 kb on + strand, within Ac3H11_921at 34.702 kb on + strand, within Ac3H11_921at 34.703 kb on - strand, within Ac3H11_921at 34.703 kb on - strand, within Ac3H11_921at 34.703 kb on - strand, within Ac3H11_921at 34.703 kb on - strand, within Ac3H11_921at 34.703 kb on - strand, within Ac3H11_921at 34.703 kb on - strand, within Ac3H11_921at 34.703 kb on - strand, within Ac3H11_921at 35.050 kb on + strand, within Ac3H11_921at 35.050 kb on + strand, within Ac3H11_921at 35.050 kb on + strand, within Ac3H11_921at 35.051 kb on - strand, within Ac3H11_921at 35.143 kb on + strand, within Ac3H11_921at 35.144 kb on - strand, within Ac3H11_921

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.0005 mg/ml
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32,679 + Ac3H11_919 0.23 -0.4
32,679 + Ac3H11_919 0.23 -0.9
32,679 + Ac3H11_919 0.23 -0.9
32,679 + Ac3H11_919 0.23 -0.4
32,679 + Ac3H11_919 0.23 -0.5
32,679 + Ac3H11_919 0.23 +0.7
32,679 + Ac3H11_919 0.23 -0.5
32,679 + Ac3H11_919 0.23 +0.9
32,679 + Ac3H11_919 0.23 -0.9
32,679 + Ac3H11_919 0.23 -1.6
32,679 + Ac3H11_919 0.23 -1.6
32,680 - Ac3H11_919 0.23 -0.3
32,680 - Ac3H11_919 0.23 -0.5
32,680 - Ac3H11_919 0.23 -0.2
32,680 - Ac3H11_919 0.23 -0.5
32,680 - Ac3H11_919 0.23 +0.9
32,680 - Ac3H11_919 0.23 -0.6
32,680 - Ac3H11_919 0.23 -0.3
32,680 - Ac3H11_919 0.23 +0.3
32,722 - Ac3H11_919 0.27 -0.9
32,722 - Ac3H11_919 0.27 -1.1
32,722 - Ac3H11_919 0.27 +0.2
32,722 - Ac3H11_919 0.27 -0.1
32,751 + Ac3H11_919 0.30 -0.5
32,751 + Ac3H11_919 0.30 +1.0
32,751 + Ac3H11_919 0.30 -0.4
32,891 + Ac3H11_919 0.45 -0.3
32,891 + Ac3H11_919 0.45 +0.0
32,892 - Ac3H11_919 0.45 -0.5
32,892 - Ac3H11_919 0.45 +1.0
32,892 - Ac3H11_919 0.45 +1.2
33,219 + Ac3H11_919 0.80 +1.7
33,220 - Ac3H11_919 0.80 -0.2
33,220 - Ac3H11_919 0.80 -0.4
33,387 + -0.7
33,387 + -0.0
33,387 + +0.1
33,387 + -0.5
33,387 + -0.9
33,387 + +0.2
33,387 + -1.3
33,388 - -1.1
33,388 - -0.3
33,388 - -0.1
33,388 - +0.2
33,412 + -0.6
33,412 + -0.6
33,412 + -0.9
33,412 + +0.1
33,413 - +0.1
33,413 - -0.3
33,413 - +0.3
33,413 - -0.7
33,433 + -0.2
33,658 + Ac3H11_920 0.18 -1.0
33,658 + Ac3H11_920 0.18 -0.8
33,658 + Ac3H11_920 0.18 -0.9
33,826 + Ac3H11_920 0.44 +0.5
33,826 + Ac3H11_920 0.44 -0.1
33,826 + Ac3H11_920 0.44 +0.8
33,826 + Ac3H11_920 0.44 -0.5
33,826 + Ac3H11_920 0.44 +0.4
33,827 - Ac3H11_920 0.44 -0.3
33,827 - Ac3H11_920 0.44 -1.1
33,827 - Ac3H11_920 0.44 -0.5
33,898 + Ac3H11_920 0.55 +0.7
33,898 + Ac3H11_920 0.55 +0.3
33,899 - Ac3H11_920 0.55 -0.5
33,970 + Ac3H11_920 0.66 -0.9
33,970 + Ac3H11_920 0.66 -0.8
33,970 + Ac3H11_920 0.66 +0.8
33,971 - Ac3H11_920 0.66 -0.0
34,015 + Ac3H11_920 0.73 -1.9
34,015 + Ac3H11_920 0.73 -0.2
34,015 + Ac3H11_920 0.73 +0.2
34,016 - Ac3H11_920 0.73 -0.3
34,016 - Ac3H11_920 0.73 -0.0
34,016 - Ac3H11_920 0.73 +0.4
34,016 - Ac3H11_920 0.73 +0.1
34,172 + +0.2
34,173 - -0.5
34,173 - +0.7
34,186 + -2.0
34,186 + +0.3
34,186 + -0.4
34,186 + +0.7
34,187 - +0.8
34,187 - -0.2
34,187 - -0.9
34,319 - -0.1
34,477 - +0.2
34,702 + Ac3H11_921 0.17 -0.8
34,702 + Ac3H11_921 0.17 -0.0
34,702 + Ac3H11_921 0.17 +1.1
34,702 + Ac3H11_921 0.17 -0.3
34,703 - Ac3H11_921 0.17 +0.3
34,703 - Ac3H11_921 0.17 +0.3
34,703 - Ac3H11_921 0.17 +0.1
34,703 - Ac3H11_921 0.17 -0.2
34,703 - Ac3H11_921 0.17 +0.6
34,703 - Ac3H11_921 0.17 -1.0
34,703 - Ac3H11_921 0.17 +0.2
35,050 + Ac3H11_921 0.31 +0.2
35,050 + Ac3H11_921 0.31 -1.3
35,050 + Ac3H11_921 0.31 -0.4
35,051 - Ac3H11_921 0.31 +1.0
35,143 + Ac3H11_921 0.35 -0.1
35,144 - Ac3H11_921 0.35 -0.2

Or see this region's nucleotide sequence