Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_448

Experiment: Sisomicin 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_446 and Ac3H11_447 overlap by 39 nucleotidesAc3H11_447 and Ac3H11_448 overlap by 28 nucleotidesAc3H11_448 and Ac3H11_449 are separated by 398 nucleotides Ac3H11_446 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 133,320 to 135,545 _446 Ac3H11_447 - hypothetical protein, at 135,507 to 135,725 _447 Ac3H11_448 - Sensory box/GGDEF family protein, at 135,698 to 138,649 _448 Ac3H11_449 - Putative hemolysin, at 139,048 to 139,689 _449 Position (kb) 135 136 137 138 139Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 134.905 kb on + strand, within Ac3H11_446at 134.905 kb on + strand, within Ac3H11_446at 134.906 kb on - strand, within Ac3H11_446at 134.906 kb on - strand, within Ac3H11_446at 134.906 kb on - strand, within Ac3H11_446at 134.906 kb on - strand, within Ac3H11_446at 134.906 kb on - strand, within Ac3H11_446at 134.906 kb on - strand, within Ac3H11_446at 134.906 kb on - strand, within Ac3H11_446at 134.906 kb on - strand, within Ac3H11_446at 134.906 kb on - strand, within Ac3H11_446at 134.933 kb on - strand, within Ac3H11_446at 134.946 kb on + strand, within Ac3H11_446at 134.946 kb on + strand, within Ac3H11_446at 134.946 kb on + strand, within Ac3H11_446at 134.946 kb on + strand, within Ac3H11_446at 134.947 kb on - strand, within Ac3H11_446at 134.947 kb on - strand, within Ac3H11_446at 134.975 kb on - strand, within Ac3H11_446at 134.999 kb on + strand, within Ac3H11_446at 134.999 kb on + strand, within Ac3H11_446at 134.999 kb on + strand, within Ac3H11_446at 134.999 kb on + strand, within Ac3H11_446at 134.999 kb on + strand, within Ac3H11_446at 135.000 kb on - strand, within Ac3H11_446at 135.413 kb on - strandat 135.459 kb on - strandat 135.462 kb on + strandat 135.462 kb on + strandat 135.462 kb on + strandat 135.462 kb on + strandat 135.462 kb on + strandat 135.462 kb on + strandat 135.462 kb on + strandat 135.463 kb on - strandat 135.463 kb on - strandat 135.463 kb on - strandat 135.463 kb on - strandat 135.463 kb on - strandat 135.463 kb on - strandat 135.524 kb on + strandat 135.524 kb on + strandat 135.524 kb on + strandat 135.524 kb on + strandat 135.524 kb on + strandat 135.524 kb on + strandat 135.524 kb on + strandat 135.524 kb on + strandat 135.524 kb on + strandat 135.525 kb on - strandat 135.525 kb on - strandat 135.525 kb on - strandat 135.525 kb on - strandat 135.525 kb on - strandat 135.525 kb on - strandat 135.528 kb on + strandat 135.529 kb on - strandat 135.529 kb on - strandat 135.529 kb on - strandat 135.559 kb on + strand, within Ac3H11_447at 135.559 kb on + strand, within Ac3H11_447at 135.560 kb on - strand, within Ac3H11_447at 135.572 kb on + strand, within Ac3H11_447at 135.572 kb on + strand, within Ac3H11_447at 135.572 kb on + strand, within Ac3H11_447at 135.572 kb on + strand, within Ac3H11_447at 135.572 kb on + strand, within Ac3H11_447at 135.572 kb on + strand, within Ac3H11_447at 135.572 kb on + strand, within Ac3H11_447at 135.573 kb on - strand, within Ac3H11_447at 135.573 kb on - strand, within Ac3H11_447at 135.573 kb on - strand, within Ac3H11_447at 135.573 kb on - strand, within Ac3H11_447at 135.573 kb on - strand, within Ac3H11_447at 135.573 kb on - strand, within Ac3H11_447at 135.573 kb on - strand, within Ac3H11_447at 135.582 kb on + strand, within Ac3H11_447at 135.631 kb on + strand, within Ac3H11_447at 135.645 kb on + strand, within Ac3H11_447at 135.645 kb on + strand, within Ac3H11_447at 135.645 kb on + strand, within Ac3H11_447at 135.645 kb on + strand, within Ac3H11_447at 135.645 kb on + strand, within Ac3H11_447at 135.645 kb on + strand, within Ac3H11_447at 135.646 kb on - strand, within Ac3H11_447at 135.646 kb on - strand, within Ac3H11_447at 135.646 kb on - strand, within Ac3H11_447at 135.646 kb on - strand, within Ac3H11_447at 135.646 kb on - strand, within Ac3H11_447at 135.646 kb on - strand, within Ac3H11_447at 135.653 kb on + strand, within Ac3H11_447at 135.654 kb on - strand, within Ac3H11_447at 135.662 kb on + strand, within Ac3H11_447at 135.723 kb on + strandat 135.724 kb on - strandat 135.724 kb on - strandat 135.724 kb on - strandat 135.765 kb on + strandat 135.766 kb on - strandat 135.838 kb on + strandat 135.838 kb on + strandat 135.839 kb on - strandat 135.839 kb on - strandat 135.839 kb on - strandat 135.948 kb on + strandat 135.949 kb on - strandat 135.949 kb on - strandat 135.969 kb on + strandat 135.984 kb on + strandat 135.984 kb on + strandat 136.410 kb on + strand, within Ac3H11_448at 136.411 kb on - strand, within Ac3H11_448at 136.542 kb on + strand, within Ac3H11_448at 136.542 kb on + strand, within Ac3H11_448at 136.543 kb on - strand, within Ac3H11_448at 136.566 kb on + strand, within Ac3H11_448at 136.599 kb on + strand, within Ac3H11_448at 136.638 kb on + strand, within Ac3H11_448at 136.639 kb on - strand, within Ac3H11_448at 136.646 kb on + strand, within Ac3H11_448at 136.647 kb on - strand, within Ac3H11_448at 136.647 kb on - strand, within Ac3H11_448at 136.647 kb on - strand, within Ac3H11_448at 136.664 kb on + strand, within Ac3H11_448at 136.665 kb on - strand, within Ac3H11_448at 136.919 kb on - strand, within Ac3H11_448at 136.919 kb on - strand, within Ac3H11_448at 137.103 kb on + strand, within Ac3H11_448at 137.104 kb on - strand, within Ac3H11_448at 137.104 kb on - strand, within Ac3H11_448at 137.172 kb on + strand, within Ac3H11_448at 137.173 kb on - strand, within Ac3H11_448at 137.363 kb on + strand, within Ac3H11_448at 137.363 kb on + strand, within Ac3H11_448at 137.363 kb on + strand, within Ac3H11_448at 137.363 kb on + strand, within Ac3H11_448at 137.363 kb on + strand, within Ac3H11_448at 137.363 kb on + strand, within Ac3H11_448at 137.363 kb on + strand, within Ac3H11_448at 137.364 kb on - strandat 137.364 kb on - strand, within Ac3H11_448at 137.364 kb on - strand, within Ac3H11_448at 137.364 kb on - strand, within Ac3H11_448at 137.495 kb on + strand, within Ac3H11_448at 137.496 kb on - strand, within Ac3H11_448at 137.496 kb on - strand, within Ac3H11_448at 137.515 kb on + strand, within Ac3H11_448at 137.516 kb on - strand, within Ac3H11_448at 137.638 kb on + strand, within Ac3H11_448at 137.638 kb on + strand, within Ac3H11_448at 137.638 kb on + strand, within Ac3H11_448at 137.639 kb on - strand, within Ac3H11_448at 137.639 kb on - strand, within Ac3H11_448at 137.639 kb on - strand, within Ac3H11_448at 137.639 kb on - strand, within Ac3H11_448at 137.658 kb on + strand, within Ac3H11_448at 137.658 kb on + strand, within Ac3H11_448at 137.658 kb on + strand, within Ac3H11_448at 137.658 kb on + strand, within Ac3H11_448at 137.659 kb on - strand, within Ac3H11_448at 137.659 kb on - strand, within Ac3H11_448at 137.659 kb on - strand, within Ac3H11_448at 137.659 kb on - strand, within Ac3H11_448at 137.659 kb on - strand, within Ac3H11_448at 137.659 kb on - strand, within Ac3H11_448at 137.662 kb on - strand, within Ac3H11_448at 137.820 kb on + strand, within Ac3H11_448at 137.820 kb on + strand, within Ac3H11_448at 137.820 kb on + strand, within Ac3H11_448at 137.820 kb on + strand, within Ac3H11_448at 137.820 kb on + strand, within Ac3H11_448at 137.820 kb on + strand, within Ac3H11_448at 137.821 kb on - strand, within Ac3H11_448at 137.821 kb on - strand, within Ac3H11_448at 137.821 kb on - strand, within Ac3H11_448at 137.936 kb on + strand, within Ac3H11_448at 137.983 kb on + strand, within Ac3H11_448at 138.102 kb on + strand, within Ac3H11_448at 138.102 kb on + strand, within Ac3H11_448at 138.102 kb on + strand, within Ac3H11_448at 138.102 kb on + strand, within Ac3H11_448at 138.102 kb on + strand, within Ac3H11_448at 138.102 kb on + strand, within Ac3H11_448at 138.102 kb on + strand, within Ac3H11_448at 138.103 kb on - strand, within Ac3H11_448at 138.103 kb on - strand, within Ac3H11_448at 138.103 kb on - strand, within Ac3H11_448at 138.103 kb on - strand, within Ac3H11_448at 138.103 kb on - strand, within Ac3H11_448at 138.103 kb on - strand, within Ac3H11_448at 138.147 kb on + strand, within Ac3H11_448at 138.147 kb on + strand, within Ac3H11_448at 138.147 kb on + strand, within Ac3H11_448at 138.148 kb on - strand, within Ac3H11_448at 138.148 kb on - strand, within Ac3H11_448at 138.188 kb on + strand, within Ac3H11_448at 138.188 kb on + strand, within Ac3H11_448at 138.188 kb on + strand, within Ac3H11_448at 138.188 kb on + strand, within Ac3H11_448at 138.188 kb on + strand, within Ac3H11_448at 138.188 kb on + strand, within Ac3H11_448at 138.188 kb on + strand, within Ac3H11_448at 138.189 kb on - strand, within Ac3H11_448at 138.189 kb on - strand, within Ac3H11_448at 138.189 kb on - strand, within Ac3H11_448at 138.189 kb on - strand, within Ac3H11_448at 138.189 kb on - strand, within Ac3H11_448at 138.320 kb on + strand, within Ac3H11_448at 138.320 kb on + strand, within Ac3H11_448at 138.320 kb on + strand, within Ac3H11_448at 138.321 kb on - strand, within Ac3H11_448at 138.321 kb on - strand, within Ac3H11_448at 138.363 kb on + strandat 138.364 kb on - strandat 138.364 kb on - strandat 138.434 kb on + strandat 138.435 kb on - strandat 138.520 kb on + strandat 138.520 kb on + strandat 138.521 kb on - strandat 138.521 kb on - strandat 138.673 kb on - strandat 138.673 kb on - strandat 138.693 kb on + strandat 138.693 kb on + strandat 138.693 kb on + strandat 138.693 kb on + strandat 138.694 kb on - strandat 138.694 kb on - strandat 139.160 kb on - strand, within Ac3H11_449at 139.205 kb on - strand, within Ac3H11_449at 139.205 kb on - strand, within Ac3H11_449at 139.205 kb on - strand, within Ac3H11_449at 139.205 kb on - strand, within Ac3H11_449at 139.445 kb on + strand, within Ac3H11_449at 139.446 kb on - strand, within Ac3H11_449at 139.446 kb on - strand, within Ac3H11_449at 139.475 kb on - strand, within Ac3H11_449at 139.475 kb on - strand, within Ac3H11_449at 139.559 kb on - strand, within Ac3H11_449

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.0005 mg/ml
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134,905 + Ac3H11_446 0.71 +0.9
134,905 + Ac3H11_446 0.71 +1.6
134,906 - Ac3H11_446 0.71 +1.8
134,906 - Ac3H11_446 0.71 +1.1
134,906 - Ac3H11_446 0.71 +1.5
134,906 - Ac3H11_446 0.71 +1.5
134,906 - Ac3H11_446 0.71 -0.1
134,906 - Ac3H11_446 0.71 +0.5
134,906 - Ac3H11_446 0.71 +1.6
134,906 - Ac3H11_446 0.71 +1.6
134,906 - Ac3H11_446 0.71 +1.6
134,933 - Ac3H11_446 0.72 +1.4
134,946 + Ac3H11_446 0.73 +1.1
134,946 + Ac3H11_446 0.73 +1.3
134,946 + Ac3H11_446 0.73 +1.4
134,946 + Ac3H11_446 0.73 +0.5
134,947 - Ac3H11_446 0.73 +1.3
134,947 - Ac3H11_446 0.73 +0.7
134,975 - Ac3H11_446 0.74 +2.0
134,999 + Ac3H11_446 0.75 +1.3
134,999 + Ac3H11_446 0.75 +0.7
134,999 + Ac3H11_446 0.75 +1.7
134,999 + Ac3H11_446 0.75 +2.1
134,999 + Ac3H11_446 0.75 +1.2
135,000 - Ac3H11_446 0.75 +0.9
135,413 - +2.0
135,459 - +0.2
135,462 + +0.9
135,462 + +1.9
135,462 + +0.3
135,462 + +0.8
135,462 + +1.0
135,462 + +0.5
135,462 + +1.1
135,463 - +1.0
135,463 - +1.4
135,463 - +1.3
135,463 - +0.7
135,463 - +1.0
135,463 - +1.3
135,524 + +1.2
135,524 + +1.0
135,524 + +1.0
135,524 + +1.5
135,524 + +0.9
135,524 + +1.1
135,524 + +1.4
135,524 + +0.9
135,524 + +1.3
135,525 - +1.0
135,525 - +1.5
135,525 - +1.1
135,525 - +0.9
135,525 - +2.0
135,525 - +0.2
135,528 + -0.6
135,529 - +0.3
135,529 - +0.5
135,529 - -0.5
135,559 + Ac3H11_447 0.24 +0.7
135,559 + Ac3H11_447 0.24 +0.2
135,560 - Ac3H11_447 0.24 -0.4
135,572 + Ac3H11_447 0.30 +0.7
135,572 + Ac3H11_447 0.30 +2.0
135,572 + Ac3H11_447 0.30 +1.3
135,572 + Ac3H11_447 0.30 +0.3
135,572 + Ac3H11_447 0.30 +0.3
135,572 + Ac3H11_447 0.30 +1.3
135,572 + Ac3H11_447 0.30 +1.1
135,573 - Ac3H11_447 0.30 +1.1
135,573 - Ac3H11_447 0.30 -0.6
135,573 - Ac3H11_447 0.30 +1.4
135,573 - Ac3H11_447 0.30 +0.1
135,573 - Ac3H11_447 0.30 +0.4
135,573 - Ac3H11_447 0.30 +0.1
135,573 - Ac3H11_447 0.30 +0.8
135,582 + Ac3H11_447 0.34 +2.5
135,631 + Ac3H11_447 0.57 +1.1
135,645 + Ac3H11_447 0.63 +0.8
135,645 + Ac3H11_447 0.63 +0.6
135,645 + Ac3H11_447 0.63 +0.9
135,645 + Ac3H11_447 0.63 +0.5
135,645 + Ac3H11_447 0.63 +0.2
135,645 + Ac3H11_447 0.63 +0.7
135,646 - Ac3H11_447 0.63 -0.6
135,646 - Ac3H11_447 0.63 -0.1
135,646 - Ac3H11_447 0.63 -1.6
135,646 - Ac3H11_447 0.63 +0.2
135,646 - Ac3H11_447 0.63 -0.3
135,646 - Ac3H11_447 0.63 -0.3
135,653 + Ac3H11_447 0.67 +0.3
135,654 - Ac3H11_447 0.67 -0.3
135,662 + Ac3H11_447 0.71 -0.1
135,723 + +0.1
135,724 - -0.3
135,724 - -0.6
135,724 - -1.2
135,765 + -0.1
135,766 - -0.4
135,838 + +0.9
135,838 + +0.3
135,839 - -0.0
135,839 - +0.6
135,839 - -0.1
135,948 + -0.2
135,949 - -0.1
135,949 - -1.1
135,969 + -0.2
135,984 + +0.0
135,984 + -1.1
136,410 + Ac3H11_448 0.24 -0.5
136,411 - Ac3H11_448 0.24 -0.6
136,542 + Ac3H11_448 0.29 -0.7
136,542 + Ac3H11_448 0.29 +0.6
136,543 - Ac3H11_448 0.29 -0.0
136,566 + Ac3H11_448 0.29 +0.4
136,599 + Ac3H11_448 0.31 -0.9
136,638 + Ac3H11_448 0.32 -0.7
136,639 - Ac3H11_448 0.32 +0.8
136,646 + Ac3H11_448 0.32 +1.0
136,647 - Ac3H11_448 0.32 -1.9
136,647 - Ac3H11_448 0.32 +1.1
136,647 - Ac3H11_448 0.32 -0.7
136,664 + Ac3H11_448 0.33 +0.6
136,665 - Ac3H11_448 0.33 +0.8
136,919 - Ac3H11_448 0.41 +1.1
136,919 - Ac3H11_448 0.41 -1.7
137,103 + Ac3H11_448 0.48 -0.4
137,104 - Ac3H11_448 0.48 +0.1
137,104 - Ac3H11_448 0.48 -0.0
137,172 + Ac3H11_448 0.50 -0.2
137,173 - Ac3H11_448 0.50 -0.2
137,363 + Ac3H11_448 0.56 -0.5
137,363 + Ac3H11_448 0.56 +0.1
137,363 + Ac3H11_448 0.56 -0.6
137,363 + Ac3H11_448 0.56 +0.4
137,363 + Ac3H11_448 0.56 -1.0
137,363 + Ac3H11_448 0.56 +0.1
137,363 + Ac3H11_448 0.56 -0.4
137,364 - +0.8
137,364 - Ac3H11_448 0.56 +0.1
137,364 - Ac3H11_448 0.56 +0.5
137,364 - Ac3H11_448 0.56 -0.3
137,495 + Ac3H11_448 0.61 -1.0
137,496 - Ac3H11_448 0.61 +0.2
137,496 - Ac3H11_448 0.61 -0.3
137,515 + Ac3H11_448 0.62 +0.3
137,516 - Ac3H11_448 0.62 +0.0
137,638 + Ac3H11_448 0.66 +0.4
137,638 + Ac3H11_448 0.66 +0.3
137,638 + Ac3H11_448 0.66 +0.8
137,639 - Ac3H11_448 0.66 +1.4
137,639 - Ac3H11_448 0.66 +0.3
137,639 - Ac3H11_448 0.66 +0.9
137,639 - Ac3H11_448 0.66 -3.0
137,658 + Ac3H11_448 0.66 -0.2
137,658 + Ac3H11_448 0.66 -0.4
137,658 + Ac3H11_448 0.66 +0.2
137,658 + Ac3H11_448 0.66 +0.4
137,659 - Ac3H11_448 0.66 +0.6
137,659 - Ac3H11_448 0.66 -0.1
137,659 - Ac3H11_448 0.66 -1.1
137,659 - Ac3H11_448 0.66 -0.3
137,659 - Ac3H11_448 0.66 +0.9
137,659 - Ac3H11_448 0.66 -2.2
137,662 - Ac3H11_448 0.67 +0.6
137,820 + Ac3H11_448 0.72 +0.9
137,820 + Ac3H11_448 0.72 -0.4
137,820 + Ac3H11_448 0.72 -0.6
137,820 + Ac3H11_448 0.72 -0.9
137,820 + Ac3H11_448 0.72 -1.4
137,820 + Ac3H11_448 0.72 +0.1
137,821 - Ac3H11_448 0.72 -0.2
137,821 - Ac3H11_448 0.72 -0.0
137,821 - Ac3H11_448 0.72 +0.8
137,936 + Ac3H11_448 0.76 -0.6
137,983 + Ac3H11_448 0.77 -0.6
138,102 + Ac3H11_448 0.81 +0.3
138,102 + Ac3H11_448 0.81 -0.3
138,102 + Ac3H11_448 0.81 +0.4
138,102 + Ac3H11_448 0.81 -0.3
138,102 + Ac3H11_448 0.81 -0.6
138,102 + Ac3H11_448 0.81 +0.3
138,102 + Ac3H11_448 0.81 +0.8
138,103 - Ac3H11_448 0.81 +0.4
138,103 - Ac3H11_448 0.81 +0.4
138,103 - Ac3H11_448 0.81 -0.5
138,103 - Ac3H11_448 0.81 +0.4
138,103 - Ac3H11_448 0.81 +0.1
138,103 - Ac3H11_448 0.81 +0.0
138,147 + Ac3H11_448 0.83 -0.1
138,147 + Ac3H11_448 0.83 -0.0
138,147 + Ac3H11_448 0.83 -1.5
138,148 - Ac3H11_448 0.83 +0.6
138,148 - Ac3H11_448 0.83 +0.1
138,188 + Ac3H11_448 0.84 -0.5
138,188 + Ac3H11_448 0.84 +0.3
138,188 + Ac3H11_448 0.84 -0.3
138,188 + Ac3H11_448 0.84 +0.5
138,188 + Ac3H11_448 0.84 +0.6
138,188 + Ac3H11_448 0.84 -1.1
138,188 + Ac3H11_448 0.84 -0.3
138,189 - Ac3H11_448 0.84 -1.3
138,189 - Ac3H11_448 0.84 -1.6
138,189 - Ac3H11_448 0.84 +0.2
138,189 - Ac3H11_448 0.84 +0.0
138,189 - Ac3H11_448 0.84 +0.1
138,320 + Ac3H11_448 0.89 +0.2
138,320 + Ac3H11_448 0.89 +1.0
138,320 + Ac3H11_448 0.89 -1.2
138,321 - Ac3H11_448 0.89 +0.4
138,321 - Ac3H11_448 0.89 -1.0
138,363 + -0.9
138,364 - -0.1
138,364 - -1.5
138,434 + +0.4
138,435 - +0.3
138,520 + +0.4
138,520 + -0.4
138,521 - +1.0
138,521 - -0.3
138,673 - -0.5
138,673 - +0.4
138,693 + -0.1
138,693 + -0.6
138,693 + +0.1
138,693 + +0.1
138,694 - +0.1
138,694 - +0.8
139,160 - Ac3H11_449 0.17 -1.0
139,205 - Ac3H11_449 0.24 +1.0
139,205 - Ac3H11_449 0.24 -1.5
139,205 - Ac3H11_449 0.24 -0.4
139,205 - Ac3H11_449 0.24 +0.6
139,445 + Ac3H11_449 0.62 +0.5
139,446 - Ac3H11_449 0.62 +0.6
139,446 - Ac3H11_449 0.62 +1.4
139,475 - Ac3H11_449 0.67 +0.3
139,475 - Ac3H11_449 0.67 +0.5
139,559 - Ac3H11_449 0.80 +1.0

Or see this region's nucleotide sequence