Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4428

Experiment: Sisomicin 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4426 and Ac3H11_4427 are separated by 29 nucleotidesAc3H11_4427 and Ac3H11_4428 overlap by 4 nucleotidesAc3H11_4428 and Ac3H11_4429 are separated by 94 nucleotides Ac3H11_4426 - Probable transmembrane protein, at 3,023 to 4,090 _4426 Ac3H11_4427 - Probable transmembrane protein, at 4,120 to 5,073 _4427 Ac3H11_4428 - Molybdopterin-binding protein, at 5,070 to 5,891 _4428 Ac3H11_4429 - Glutamine synthetase type I (EC 6.3.1.2), at 5,986 to 7,479 _4429 Position (kb) 5 6Strain fitness (log2 ratio) -2 -1 0 1 2at 4.106 kb on + strandat 4.106 kb on + strandat 4.107 kb on - strandat 4.107 kb on - strandat 4.119 kb on + strandat 4.119 kb on + strandat 4.119 kb on + strandat 4.119 kb on + strandat 4.119 kb on + strandat 4.119 kb on + strandat 4.119 kb on + strandat 4.119 kb on + strandat 4.119 kb on + strandat 4.119 kb on + strandat 4.119 kb on + strandat 4.120 kb on - strandat 4.120 kb on - strandat 4.120 kb on - strandat 4.120 kb on - strandat 4.120 kb on - strandat 4.120 kb on - strandat 4.120 kb on - strandat 4.120 kb on - strandat 4.120 kb on - strandat 4.120 kb on - strandat 4.120 kb on - strandat 4.120 kb on - strandat 4.120 kb on - strandat 4.171 kb on + strandat 4.171 kb on + strandat 4.171 kb on + strandat 4.171 kb on + strandat 4.171 kb on + strandat 4.171 kb on + strandat 4.171 kb on + strandat 4.172 kb on - strandat 4.172 kb on - strandat 4.172 kb on - strandat 4.172 kb on - strandat 4.172 kb on - strandat 4.249 kb on + strand, within Ac3H11_4427at 4.249 kb on + strand, within Ac3H11_4427at 4.249 kb on + strand, within Ac3H11_4427at 4.250 kb on - strand, within Ac3H11_4427at 4.250 kb on - strand, within Ac3H11_4427at 4.256 kb on - strand, within Ac3H11_4427at 4.256 kb on - strand, within Ac3H11_4427at 4.646 kb on - strand, within Ac3H11_4427at 4.846 kb on + strand, within Ac3H11_4427at 4.846 kb on + strand, within Ac3H11_4427at 4.846 kb on + strand, within Ac3H11_4427at 4.846 kb on + strand, within Ac3H11_4427at 4.846 kb on + strand, within Ac3H11_4427at 4.846 kb on + strand, within Ac3H11_4427at 4.846 kb on + strand, within Ac3H11_4427at 4.847 kb on - strand, within Ac3H11_4427at 4.847 kb on - strand, within Ac3H11_4427at 4.847 kb on - strand, within Ac3H11_4427at 4.847 kb on - strand, within Ac3H11_4427at 4.847 kb on - strand, within Ac3H11_4427at 4.847 kb on - strand, within Ac3H11_4427at 4.847 kb on - strand, within Ac3H11_4427at 4.847 kb on - strand, within Ac3H11_4427at 4.881 kb on + strand, within Ac3H11_4427at 4.882 kb on - strand, within Ac3H11_4427at 4.889 kb on - strand, within Ac3H11_4427at 5.034 kb on + strandat 5.034 kb on + strandat 5.035 kb on - strandat 5.187 kb on + strand, within Ac3H11_4428at 5.187 kb on + strand, within Ac3H11_4428at 5.187 kb on + strand, within Ac3H11_4428at 5.196 kb on + strand, within Ac3H11_4428at 5.196 kb on + strand, within Ac3H11_4428at 5.196 kb on + strand, within Ac3H11_4428at 5.196 kb on + strand, within Ac3H11_4428at 5.197 kb on - strand, within Ac3H11_4428at 5.197 kb on - strand, within Ac3H11_4428at 5.197 kb on - strand, within Ac3H11_4428at 5.392 kb on + strand, within Ac3H11_4428at 5.392 kb on + strand, within Ac3H11_4428at 5.392 kb on + strand, within Ac3H11_4428at 5.392 kb on + strand, within Ac3H11_4428at 5.393 kb on - strand, within Ac3H11_4428at 5.415 kb on + strand, within Ac3H11_4428at 5.415 kb on + strand, within Ac3H11_4428at 5.416 kb on - strand, within Ac3H11_4428at 5.496 kb on + strand, within Ac3H11_4428at 5.496 kb on + strand, within Ac3H11_4428at 5.496 kb on + strand, within Ac3H11_4428at 5.496 kb on + strand, within Ac3H11_4428at 5.496 kb on + strand, within Ac3H11_4428at 5.496 kb on + strand, within Ac3H11_4428at 5.496 kb on + strand, within Ac3H11_4428at 5.496 kb on + strand, within Ac3H11_4428at 5.496 kb on + strand, within Ac3H11_4428at 5.497 kb on - strand, within Ac3H11_4428at 5.497 kb on - strand, within Ac3H11_4428at 5.497 kb on - strand, within Ac3H11_4428at 5.497 kb on - strand, within Ac3H11_4428at 5.497 kb on - strand, within Ac3H11_4428at 5.497 kb on - strand, within Ac3H11_4428at 5.610 kb on + strand, within Ac3H11_4428at 5.611 kb on - strand, within Ac3H11_4428at 5.624 kb on + strand, within Ac3H11_4428at 5.661 kb on + strand, within Ac3H11_4428at 5.662 kb on - strand, within Ac3H11_4428at 5.662 kb on - strand, within Ac3H11_4428at 5.763 kb on + strand, within Ac3H11_4428at 5.763 kb on + strand, within Ac3H11_4428at 5.763 kb on + strand, within Ac3H11_4428at 5.763 kb on + strand, within Ac3H11_4428at 5.764 kb on - strand, within Ac3H11_4428at 5.764 kb on - strand, within Ac3H11_4428at 5.774 kb on + strand, within Ac3H11_4428at 5.775 kb on - strand, within Ac3H11_4428at 5.775 kb on - strand, within Ac3H11_4428at 5.775 kb on - strand, within Ac3H11_4428at 5.775 kb on - strand, within Ac3H11_4428at 5.775 kb on - strand, within Ac3H11_4428at 5.775 kb on - strand, within Ac3H11_4428at 5.775 kb on - strand, within Ac3H11_4428at 5.956 kb on + strandat 5.956 kb on + strandat 5.957 kb on - strandat 5.976 kb on + strandat 5.976 kb on + strandat 5.976 kb on + strandat 5.976 kb on + strandat 5.977 kb on - strandat 5.977 kb on - strandat 5.977 kb on - strandat 5.984 kb on + strandat 6.015 kb on + strandat 6.015 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.0005 mg/ml
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4,106 + -0.3
4,106 + -0.2
4,107 - +0.2
4,107 - +2.7
4,119 + +1.7
4,119 + +0.1
4,119 + -0.3
4,119 + +0.3
4,119 + +1.3
4,119 + -0.5
4,119 + +0.6
4,119 + +0.6
4,119 + +0.2
4,119 + +0.4
4,119 + +0.7
4,120 - -0.0
4,120 - +0.2
4,120 - -0.1
4,120 - -1.5
4,120 - +0.5
4,120 - -0.2
4,120 - +0.6
4,120 - -0.3
4,120 - +1.3
4,120 - +0.6
4,120 - -0.5
4,120 - +0.6
4,120 - +0.4
4,171 + +0.9
4,171 + -0.1
4,171 + -0.4
4,171 + -0.6
4,171 + -0.7
4,171 + +0.1
4,171 + -1.5
4,172 - +0.3
4,172 - +0.1
4,172 - -1.7
4,172 - -0.6
4,172 - -0.8
4,249 + Ac3H11_4427 0.14 +0.7
4,249 + Ac3H11_4427 0.14 -0.5
4,249 + Ac3H11_4427 0.14 -0.3
4,250 - Ac3H11_4427 0.14 +0.1
4,250 - Ac3H11_4427 0.14 -0.7
4,256 - Ac3H11_4427 0.14 +0.0
4,256 - Ac3H11_4427 0.14 -0.2
4,646 - Ac3H11_4427 0.55 -1.0
4,846 + Ac3H11_4427 0.76 +0.2
4,846 + Ac3H11_4427 0.76 -0.3
4,846 + Ac3H11_4427 0.76 +0.4
4,846 + Ac3H11_4427 0.76 -0.9
4,846 + Ac3H11_4427 0.76 -0.1
4,846 + Ac3H11_4427 0.76 -0.5
4,846 + Ac3H11_4427 0.76 +0.3
4,847 - Ac3H11_4427 0.76 -0.3
4,847 - Ac3H11_4427 0.76 -1.1
4,847 - Ac3H11_4427 0.76 +0.4
4,847 - Ac3H11_4427 0.76 -0.9
4,847 - Ac3H11_4427 0.76 -0.0
4,847 - Ac3H11_4427 0.76 +0.7
4,847 - Ac3H11_4427 0.76 +0.4
4,847 - Ac3H11_4427 0.76 -2.0
4,881 + Ac3H11_4427 0.80 -0.8
4,882 - Ac3H11_4427 0.80 -0.8
4,889 - Ac3H11_4427 0.81 +0.3
5,034 + +0.8
5,034 + +0.5
5,035 - -0.4
5,187 + Ac3H11_4428 0.14 -0.1
5,187 + Ac3H11_4428 0.14 +0.7
5,187 + Ac3H11_4428 0.14 -1.0
5,196 + Ac3H11_4428 0.15 -0.8
5,196 + Ac3H11_4428 0.15 +0.8
5,196 + Ac3H11_4428 0.15 -0.6
5,196 + Ac3H11_4428 0.15 +1.0
5,197 - Ac3H11_4428 0.15 +0.8
5,197 - Ac3H11_4428 0.15 -0.5
5,197 - Ac3H11_4428 0.15 -0.9
5,392 + Ac3H11_4428 0.39 +0.7
5,392 + Ac3H11_4428 0.39 +0.2
5,392 + Ac3H11_4428 0.39 +0.9
5,392 + Ac3H11_4428 0.39 -0.1
5,393 - Ac3H11_4428 0.39 +0.5
5,415 + Ac3H11_4428 0.42 +0.2
5,415 + Ac3H11_4428 0.42 +0.1
5,416 - Ac3H11_4428 0.42 +1.4
5,496 + Ac3H11_4428 0.52 -1.6
5,496 + Ac3H11_4428 0.52 -0.9
5,496 + Ac3H11_4428 0.52 -0.4
5,496 + Ac3H11_4428 0.52 -0.8
5,496 + Ac3H11_4428 0.52 -0.3
5,496 + Ac3H11_4428 0.52 -1.0
5,496 + Ac3H11_4428 0.52 -0.9
5,496 + Ac3H11_4428 0.52 +0.1
5,496 + Ac3H11_4428 0.52 -0.5
5,497 - Ac3H11_4428 0.52 +0.4
5,497 - Ac3H11_4428 0.52 -0.0
5,497 - Ac3H11_4428 0.52 +0.1
5,497 - Ac3H11_4428 0.52 +0.2
5,497 - Ac3H11_4428 0.52 +0.2
5,497 - Ac3H11_4428 0.52 +0.3
5,610 + Ac3H11_4428 0.66 -0.4
5,611 - Ac3H11_4428 0.66 +0.8
5,624 + Ac3H11_4428 0.67 +0.5
5,661 + Ac3H11_4428 0.72 -0.2
5,662 - Ac3H11_4428 0.72 +0.8
5,662 - Ac3H11_4428 0.72 -0.9
5,763 + Ac3H11_4428 0.84 +1.4
5,763 + Ac3H11_4428 0.84 -0.3
5,763 + Ac3H11_4428 0.84 +0.6
5,763 + Ac3H11_4428 0.84 -1.2
5,764 - Ac3H11_4428 0.84 -0.3
5,764 - Ac3H11_4428 0.84 +0.3
5,774 + Ac3H11_4428 0.86 +0.9
5,775 - Ac3H11_4428 0.86 -0.8
5,775 - Ac3H11_4428 0.86 +0.0
5,775 - Ac3H11_4428 0.86 +0.6
5,775 - Ac3H11_4428 0.86 +1.6
5,775 - Ac3H11_4428 0.86 +0.3
5,775 - Ac3H11_4428 0.86 -0.2
5,775 - Ac3H11_4428 0.86 +1.0
5,956 + +0.7
5,956 + -0.1
5,957 - -0.2
5,976 + -0.0
5,976 + -1.1
5,976 + -0.7
5,976 + +1.0
5,977 - -0.1
5,977 - -2.3
5,977 - -1.2
5,984 + +0.5
6,015 + -0.4
6,015 + +0.2

Or see this region's nucleotide sequence