Experiment: Sisomicin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_4379 and Ac3H11_4380 are separated by 465 nucleotides Ac3H11_4380 and Ac3H11_4381 are separated by 96 nucleotides Ac3H11_4381 and Ac3H11_4382 are separated by 45 nucleotides
Ac3H11_4379 - hypothetical protein, at 173,374 to 174,936
_4379
Ac3H11_4380 - Putative membrane protein, at 175,402 to 176,115
_4380
Ac3H11_4381 - hypothetical protein, at 176,212 to 176,787
_4381
Ac3H11_4382 - hypothetical protein, at 176,833 to 176,976
_4382
Position (kb) 175
176
177 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 174.548 kb on + strand, within Ac3H11_4379 at 174.548 kb on + strand, within Ac3H11_4379 at 174.549 kb on - strand, within Ac3H11_4379 at 174.608 kb on + strand, within Ac3H11_4379 at 174.608 kb on + strand, within Ac3H11_4379 at 174.608 kb on + strand, within Ac3H11_4379 at 174.608 kb on + strand, within Ac3H11_4379 at 174.608 kb on + strand, within Ac3H11_4379 at 174.609 kb on - strand, within Ac3H11_4379 at 174.609 kb on - strand, within Ac3H11_4379 at 174.609 kb on - strand, within Ac3H11_4379 at 174.609 kb on - strand, within Ac3H11_4379 at 174.609 kb on - strand, within Ac3H11_4379 at 174.710 kb on + strand, within Ac3H11_4379 at 174.710 kb on + strand, within Ac3H11_4379 at 174.710 kb on + strand, within Ac3H11_4379 at 174.710 kb on + strand, within Ac3H11_4379 at 174.710 kb on + strand, within Ac3H11_4379 at 174.711 kb on - strand, within Ac3H11_4379 at 174.711 kb on - strand, within Ac3H11_4379 at 174.711 kb on - strand, within Ac3H11_4379 at 174.761 kb on + strand, within Ac3H11_4379 at 174.761 kb on + strand, within Ac3H11_4379 at 174.761 kb on + strand, within Ac3H11_4379 at 174.761 kb on + strand, within Ac3H11_4379 at 174.761 kb on + strand, within Ac3H11_4379 at 174.762 kb on - strand, within Ac3H11_4379 at 174.806 kb on + strand at 174.806 kb on + strand at 174.806 kb on + strand at 174.908 kb on + strand at 174.908 kb on + strand at 175.007 kb on + strand at 175.007 kb on + strand at 175.007 kb on + strand at 175.007 kb on + strand at 175.007 kb on + strand at 175.007 kb on + strand at 175.008 kb on - strand at 175.008 kb on - strand at 175.008 kb on - strand at 175.008 kb on - strand at 175.008 kb on - strand at 175.008 kb on - strand at 175.008 kb on - strand at 175.014 kb on + strand at 175.015 kb on - strand at 175.015 kb on - strand at 175.042 kb on + strand at 175.042 kb on + strand at 175.042 kb on + strand at 175.042 kb on + strand at 175.042 kb on + strand at 175.042 kb on + strand at 175.042 kb on + strand at 175.042 kb on + strand at 175.042 kb on + strand at 175.042 kb on + strand at 175.042 kb on + strand at 175.042 kb on + strand at 175.042 kb on + strand at 175.043 kb on - strand at 175.043 kb on - strand at 175.043 kb on - strand at 175.043 kb on - strand at 175.043 kb on - strand at 175.255 kb on + strand at 175.256 kb on - strand at 175.257 kb on + strand at 175.258 kb on - strand at 175.258 kb on - strand at 175.259 kb on + strand at 175.259 kb on + strand at 175.259 kb on + strand at 175.259 kb on + strand at 175.259 kb on + strand at 175.259 kb on + strand at 175.259 kb on + strand at 175.259 kb on + strand at 175.260 kb on - strand at 175.260 kb on - strand at 175.260 kb on - strand at 175.282 kb on + strand at 175.282 kb on + strand at 175.282 kb on + strand at 175.282 kb on + strand at 175.283 kb on - strand at 175.283 kb on - strand at 175.283 kb on - strand at 175.283 kb on - strand at 175.283 kb on - strand at 175.283 kb on - strand at 175.286 kb on + strand at 175.286 kb on + strand at 175.286 kb on + strand at 175.445 kb on + strand at 175.445 kb on + strand at 175.445 kb on + strand at 175.445 kb on + strand at 175.446 kb on - strand at 175.446 kb on - strand at 175.446 kb on - strand at 175.446 kb on - strand at 175.446 kb on - strand at 175.446 kb on - strand at 175.446 kb on - strand at 175.538 kb on + strand, within Ac3H11_4380 at 175.538 kb on + strand, within Ac3H11_4380 at 175.539 kb on - strand, within Ac3H11_4380 at 175.539 kb on - strand, within Ac3H11_4380 at 175.539 kb on - strand, within Ac3H11_4380 at 175.539 kb on - strand, within Ac3H11_4380 at 175.820 kb on + strand, within Ac3H11_4380 at 175.820 kb on + strand, within Ac3H11_4380 at 175.820 kb on + strand, within Ac3H11_4380 at 175.820 kb on + strand, within Ac3H11_4380 at 175.820 kb on + strand, within Ac3H11_4380 at 175.820 kb on + strand, within Ac3H11_4380 at 175.820 kb on + strand, within Ac3H11_4380 at 175.820 kb on + strand, within Ac3H11_4380 at 175.820 kb on + strand, within Ac3H11_4380 at 175.820 kb on + strand, within Ac3H11_4380 at 175.821 kb on - strand, within Ac3H11_4380 at 175.821 kb on - strand, within Ac3H11_4380 at 175.821 kb on - strand, within Ac3H11_4380 at 175.821 kb on - strand, within Ac3H11_4380 at 175.821 kb on - strand, within Ac3H11_4380 at 175.821 kb on - strand, within Ac3H11_4380 at 175.821 kb on - strand, within Ac3H11_4380 at 175.821 kb on - strand, within Ac3H11_4380 at 175.821 kb on - strand, within Ac3H11_4380 at 176.039 kb on + strand, within Ac3H11_4380 at 176.039 kb on + strand, within Ac3H11_4380 at 176.039 kb on + strand, within Ac3H11_4380 at 176.039 kb on + strand, within Ac3H11_4380 at 176.039 kb on + strand, within Ac3H11_4380 at 176.039 kb on + strand, within Ac3H11_4380 at 176.039 kb on + strand, within Ac3H11_4380 at 176.040 kb on - strand, within Ac3H11_4380 at 176.040 kb on - strand, within Ac3H11_4380 at 176.040 kb on - strand, within Ac3H11_4380 at 176.197 kb on + strand at 176.197 kb on + strand at 176.197 kb on + strand at 176.384 kb on + strand, within Ac3H11_4381 at 176.384 kb on + strand, within Ac3H11_4381 at 176.384 kb on + strand, within Ac3H11_4381 at 176.384 kb on + strand, within Ac3H11_4381 at 176.384 kb on + strand, within Ac3H11_4381 at 176.385 kb on - strand, within Ac3H11_4381 at 176.385 kb on - strand, within Ac3H11_4381 at 176.420 kb on + strand, within Ac3H11_4381 at 176.420 kb on + strand, within Ac3H11_4381 at 176.421 kb on - strand, within Ac3H11_4381 at 176.421 kb on - strand, within Ac3H11_4381 at 176.421 kb on - strand, within Ac3H11_4381 at 176.421 kb on - strand, within Ac3H11_4381 at 176.421 kb on - strand, within Ac3H11_4381 at 176.421 kb on - strand, within Ac3H11_4381 at 176.421 kb on - strand, within Ac3H11_4381 at 176.421 kb on - strand, within Ac3H11_4381 at 176.504 kb on + strand, within Ac3H11_4381 at 176.504 kb on + strand, within Ac3H11_4381 at 176.504 kb on + strand, within Ac3H11_4381 at 176.504 kb on + strand, within Ac3H11_4381 at 176.504 kb on + strand, within Ac3H11_4381 at 176.505 kb on - strand, within Ac3H11_4381 at 176.505 kb on - strand, within Ac3H11_4381 at 176.505 kb on - strand, within Ac3H11_4381 at 176.564 kb on + strand, within Ac3H11_4381 at 176.564 kb on + strand, within Ac3H11_4381 at 176.564 kb on + strand, within Ac3H11_4381 at 176.565 kb on - strand, within Ac3H11_4381 at 176.568 kb on - strand, within Ac3H11_4381 at 176.568 kb on - strand, within Ac3H11_4381 at 176.660 kb on + strand, within Ac3H11_4381 at 176.660 kb on + strand, within Ac3H11_4381 at 176.661 kb on - strand, within Ac3H11_4381 at 176.661 kb on - strand, within Ac3H11_4381 at 176.661 kb on - strand, within Ac3H11_4381 at 176.661 kb on - strand, within Ac3H11_4381 at 176.693 kb on + strand, within Ac3H11_4381 at 176.693 kb on + strand, within Ac3H11_4381 at 176.693 kb on + strand, within Ac3H11_4381 at 176.694 kb on - strand, within Ac3H11_4381 at 176.694 kb on - strand, within Ac3H11_4381 at 176.694 kb on - strand, within Ac3H11_4381 at 176.694 kb on - strand, within Ac3H11_4381 at 176.694 kb on - strand, within Ac3H11_4381 at 176.744 kb on + strand at 176.744 kb on + strand at 176.814 kb on - strand at 176.901 kb on + strand, within Ac3H11_4382 at 176.974 kb on + strand at 176.974 kb on + strand at 176.974 kb on + strand at 176.974 kb on + strand at 176.975 kb on - strand at 177.060 kb on - strand at 177.060 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.0005 mg/ml remove 174,548 + Ac3H11_4379 0.75 +1.1 174,548 + Ac3H11_4379 0.75 +1.0 174,549 - Ac3H11_4379 0.75 -0.1 174,608 + Ac3H11_4379 0.79 +0.7 174,608 + Ac3H11_4379 0.79 +0.8 174,608 + Ac3H11_4379 0.79 +0.2 174,608 + Ac3H11_4379 0.79 +0.7 174,608 + Ac3H11_4379 0.79 +1.5 174,609 - Ac3H11_4379 0.79 +1.5 174,609 - Ac3H11_4379 0.79 +1.0 174,609 - Ac3H11_4379 0.79 +1.2 174,609 - Ac3H11_4379 0.79 -0.3 174,609 - Ac3H11_4379 0.79 +0.8 174,710 + Ac3H11_4379 0.85 +1.2 174,710 + Ac3H11_4379 0.85 +0.5 174,710 + Ac3H11_4379 0.85 +1.1 174,710 + Ac3H11_4379 0.85 +1.7 174,710 + Ac3H11_4379 0.85 +0.7 174,711 - Ac3H11_4379 0.86 +0.5 174,711 - Ac3H11_4379 0.86 +0.3 174,711 - Ac3H11_4379 0.86 -0.5 174,761 + Ac3H11_4379 0.89 +0.3 174,761 + Ac3H11_4379 0.89 +0.3 174,761 + Ac3H11_4379 0.89 +0.8 174,761 + Ac3H11_4379 0.89 +1.1 174,761 + Ac3H11_4379 0.89 +0.6 174,762 - Ac3H11_4379 0.89 +0.2 174,806 + +0.6 174,806 + +0.7 174,806 + +0.5 174,908 + +0.9 174,908 + +1.4 175,007 + +0.3 175,007 + +0.4 175,007 + +1.3 175,007 + +1.6 175,007 + +0.7 175,007 + +1.1 175,008 - +0.9 175,008 - -0.2 175,008 - -0.1 175,008 - +0.8 175,008 - +0.4 175,008 - +0.2 175,008 - +0.8 175,014 + +0.8 175,015 - +0.3 175,015 - +1.0 175,042 + +1.0 175,042 + +1.1 175,042 + +1.2 175,042 + -0.5 175,042 + +1.1 175,042 + +1.6 175,042 + +0.6 175,042 + +1.3 175,042 + -0.8 175,042 + +0.5 175,042 + +1.6 175,042 + +0.6 175,042 + +0.1 175,043 - -1.7 175,043 - +0.2 175,043 - +0.4 175,043 - -1.3 175,043 - +0.4 175,255 + -1.1 175,256 - +0.1 175,257 + -0.1 175,258 - -0.4 175,258 - -0.2 175,259 + -1.0 175,259 + +0.3 175,259 + +0.3 175,259 + +1.0 175,259 + +0.2 175,259 + +0.7 175,259 + -0.3 175,259 + -0.5 175,260 - -0.4 175,260 - -0.2 175,260 - +0.2 175,282 + -0.7 175,282 + +0.3 175,282 + -0.7 175,282 + -1.4 175,283 - -1.4 175,283 - +0.1 175,283 - -0.1 175,283 - +0.3 175,283 - +0.3 175,283 - +0.9 175,286 + +1.1 175,286 + -0.0 175,286 + -0.1 175,445 + -0.7 175,445 + +0.8 175,445 + +0.3 175,445 + -0.0 175,446 - -1.1 175,446 - -2.2 175,446 - -1.1 175,446 - +0.2 175,446 - -0.8 175,446 - -3.5 175,446 - -0.1 175,538 + Ac3H11_4380 0.19 +0.9 175,538 + Ac3H11_4380 0.19 -0.4 175,539 - Ac3H11_4380 0.19 -1.0 175,539 - Ac3H11_4380 0.19 +0.1 175,539 - Ac3H11_4380 0.19 -1.6 175,539 - Ac3H11_4380 0.19 +0.5 175,820 + Ac3H11_4380 0.59 +0.6 175,820 + Ac3H11_4380 0.59 -1.2 175,820 + Ac3H11_4380 0.59 +0.5 175,820 + Ac3H11_4380 0.59 -0.2 175,820 + Ac3H11_4380 0.59 -0.6 175,820 + Ac3H11_4380 0.59 -0.4 175,820 + Ac3H11_4380 0.59 +0.3 175,820 + Ac3H11_4380 0.59 -0.2 175,820 + Ac3H11_4380 0.59 -0.0 175,820 + Ac3H11_4380 0.59 +0.4 175,821 - Ac3H11_4380 0.59 +0.4 175,821 - Ac3H11_4380 0.59 -0.2 175,821 - Ac3H11_4380 0.59 +0.8 175,821 - Ac3H11_4380 0.59 -0.4 175,821 - Ac3H11_4380 0.59 -0.4 175,821 - Ac3H11_4380 0.59 -0.7 175,821 - Ac3H11_4380 0.59 -0.3 175,821 - Ac3H11_4380 0.59 -0.0 175,821 - Ac3H11_4380 0.59 -0.6 176,039 + Ac3H11_4380 0.89 -0.5 176,039 + Ac3H11_4380 0.89 +0.7 176,039 + Ac3H11_4380 0.89 -0.4 176,039 + Ac3H11_4380 0.89 +0.0 176,039 + Ac3H11_4380 0.89 -2.6 176,039 + Ac3H11_4380 0.89 -0.2 176,039 + Ac3H11_4380 0.89 +0.4 176,040 - Ac3H11_4380 0.89 +0.5 176,040 - Ac3H11_4380 0.89 -0.7 176,040 - Ac3H11_4380 0.89 -1.1 176,197 + +1.2 176,197 + +0.7 176,197 + -0.8 176,384 + Ac3H11_4381 0.30 -0.2 176,384 + Ac3H11_4381 0.30 -1.7 176,384 + Ac3H11_4381 0.30 -1.3 176,384 + Ac3H11_4381 0.30 +0.3 176,384 + Ac3H11_4381 0.30 +0.5 176,385 - Ac3H11_4381 0.30 -0.0 176,385 - Ac3H11_4381 0.30 -0.9 176,420 + Ac3H11_4381 0.36 -0.6 176,420 + Ac3H11_4381 0.36 -0.5 176,421 - Ac3H11_4381 0.36 +0.8 176,421 - Ac3H11_4381 0.36 -0.0 176,421 - Ac3H11_4381 0.36 -0.5 176,421 - Ac3H11_4381 0.36 -1.8 176,421 - Ac3H11_4381 0.36 +0.7 176,421 - Ac3H11_4381 0.36 +0.2 176,421 - Ac3H11_4381 0.36 +0.7 176,421 - Ac3H11_4381 0.36 -0.2 176,504 + Ac3H11_4381 0.51 -0.4 176,504 + Ac3H11_4381 0.51 +0.6 176,504 + Ac3H11_4381 0.51 +1.6 176,504 + Ac3H11_4381 0.51 -0.6 176,504 + Ac3H11_4381 0.51 -1.2 176,505 - Ac3H11_4381 0.51 -0.6 176,505 - Ac3H11_4381 0.51 +0.3 176,505 - Ac3H11_4381 0.51 -1.1 176,564 + Ac3H11_4381 0.61 +0.5 176,564 + Ac3H11_4381 0.61 -1.1 176,564 + Ac3H11_4381 0.61 -0.2 176,565 - Ac3H11_4381 0.61 +0.1 176,568 - Ac3H11_4381 0.62 +0.3 176,568 - Ac3H11_4381 0.62 +0.0 176,660 + Ac3H11_4381 0.78 -1.4 176,660 + Ac3H11_4381 0.78 -0.4 176,661 - Ac3H11_4381 0.78 +0.7 176,661 - Ac3H11_4381 0.78 +0.8 176,661 - Ac3H11_4381 0.78 +0.4 176,661 - Ac3H11_4381 0.78 -0.2 176,693 + Ac3H11_4381 0.84 +0.5 176,693 + Ac3H11_4381 0.84 -1.0 176,693 + Ac3H11_4381 0.84 +0.0 176,694 - Ac3H11_4381 0.84 -0.8 176,694 - Ac3H11_4381 0.84 +0.4 176,694 - Ac3H11_4381 0.84 +0.3 176,694 - Ac3H11_4381 0.84 -1.7 176,694 - Ac3H11_4381 0.84 -0.7 176,744 + -0.7 176,744 + -1.1 176,814 - -0.3 176,901 + Ac3H11_4382 0.47 +0.2 176,974 + +1.0 176,974 + -1.4 176,974 + +0.8 176,974 + -0.2 176,975 - +0.2 177,060 - -0.2 177,060 - +0.1
Or see this region's nucleotide sequence