Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4094

Experiment: Sisomicin 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4093 and Ac3H11_4094 are separated by 177 nucleotidesAc3H11_4094 and Ac3H11_4095 overlap by 4 nucleotidesAc3H11_4095 and Ac3H11_4096 are separated by 57 nucleotides Ac3H11_4093 - Pyruvate dehydrogenase E1 component (EC 1.2.4.1), at 343,651 to 346,368 _4093 Ac3H11_4094 - Probable two-component transmembrane sensor histidine kinase transcription regulator protein (EC 2.7.3.-), at 346,546 to 349,098 _4094 Ac3H11_4095 - Nitrogen regulation protein NR(I), at 349,095 to 349,721 _4095 Ac3H11_4096 - Methylenetetrahydrofolate dehydrogenase (NADP+) (EC 1.5.1.5) / Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9), at 349,779 to 350,651 _4096 Position (kb) 346 347 348 349 350Strain fitness (log2 ratio) -2 -1 0 1 2 3at 345.704 kb on + strand, within Ac3H11_4093at 345.704 kb on + strand, within Ac3H11_4093at 345.705 kb on - strand, within Ac3H11_4093at 345.705 kb on - strand, within Ac3H11_4093at 345.705 kb on - strand, within Ac3H11_4093at 345.705 kb on - strand, within Ac3H11_4093at 345.726 kb on - strand, within Ac3H11_4093at 345.726 kb on - strand, within Ac3H11_4093at 345.879 kb on - strand, within Ac3H11_4093at 345.879 kb on - strand, within Ac3H11_4093at 345.879 kb on - strand, within Ac3H11_4093at 345.879 kb on - strand, within Ac3H11_4093at 345.890 kb on + strand, within Ac3H11_4093at 345.891 kb on - strand, within Ac3H11_4093at 345.891 kb on - strand, within Ac3H11_4093at 345.891 kb on - strand, within Ac3H11_4093at 345.920 kb on + strand, within Ac3H11_4093at 345.920 kb on + strand, within Ac3H11_4093at 345.920 kb on + strand, within Ac3H11_4093at 345.920 kb on + strand, within Ac3H11_4093at 345.920 kb on + strand, within Ac3H11_4093at 345.921 kb on - strand, within Ac3H11_4093at 345.921 kb on - strand, within Ac3H11_4093at 345.921 kb on - strand, within Ac3H11_4093at 345.921 kb on - strand, within Ac3H11_4093at 346.094 kb on + strand, within Ac3H11_4093at 346.094 kb on + strand, within Ac3H11_4093at 346.094 kb on + strand, within Ac3H11_4093at 346.094 kb on + strand, within Ac3H11_4093at 346.094 kb on + strand, within Ac3H11_4093at 346.095 kb on - strand, within Ac3H11_4093at 346.170 kb on - strandat 346.242 kb on - strandat 346.242 kb on - strandat 346.242 kb on - strandat 346.242 kb on - strandat 346.382 kb on + strandat 346.382 kb on + strandat 346.382 kb on + strandat 346.382 kb on + strandat 346.383 kb on - strandat 346.383 kb on - strandat 346.383 kb on - strandat 346.383 kb on - strandat 346.383 kb on - strandat 346.383 kb on - strandat 346.383 kb on - strandat 346.400 kb on + strandat 346.403 kb on + strandat 346.404 kb on - strandat 346.404 kb on - strandat 346.404 kb on - strandat 346.414 kb on + strandat 346.414 kb on + strandat 346.526 kb on - strandat 346.526 kb on - strandat 346.526 kb on - strandat 346.526 kb on - strandat 346.695 kb on - strandat 346.711 kb on + strandat 346.711 kb on + strandat 346.711 kb on + strandat 346.712 kb on - strandat 346.768 kb on + strandat 346.901 kb on - strand, within Ac3H11_4094at 347.068 kb on + strand, within Ac3H11_4094at 347.068 kb on + strand, within Ac3H11_4094at 347.068 kb on + strand, within Ac3H11_4094at 347.068 kb on + strand, within Ac3H11_4094at 347.069 kb on - strand, within Ac3H11_4094at 347.069 kb on - strand, within Ac3H11_4094at 347.225 kb on - strand, within Ac3H11_4094at 347.332 kb on + strand, within Ac3H11_4094at 347.386 kb on + strand, within Ac3H11_4094at 347.603 kb on - strand, within Ac3H11_4094at 347.603 kb on - strand, within Ac3H11_4094at 347.677 kb on + strand, within Ac3H11_4094at 347.806 kb on + strand, within Ac3H11_4094at 347.806 kb on + strand, within Ac3H11_4094at 347.806 kb on + strand, within Ac3H11_4094at 347.807 kb on - strand, within Ac3H11_4094at 347.807 kb on - strand, within Ac3H11_4094at 348.258 kb on + strand, within Ac3H11_4094at 348.647 kb on - strand, within Ac3H11_4094at 349.125 kb on + strandat 349.125 kb on + strandat 349.125 kb on + strandat 349.125 kb on + strandat 349.125 kb on + strandat 349.125 kb on + strandat 349.125 kb on + strandat 349.125 kb on + strandat 349.125 kb on + strandat 349.125 kb on + strandat 349.132 kb on + strandat 349.188 kb on + strand, within Ac3H11_4095at 349.195 kb on + strand, within Ac3H11_4095at 349.195 kb on + strand, within Ac3H11_4095at 349.195 kb on + strand, within Ac3H11_4095at 349.195 kb on + strand, within Ac3H11_4095at 349.491 kb on + strand, within Ac3H11_4095at 349.491 kb on + strand, within Ac3H11_4095at 349.624 kb on + strand, within Ac3H11_4095at 349.787 kb on + strandat 349.796 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.0005 mg/ml
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345,704 + Ac3H11_4093 0.76 -0.5
345,704 + Ac3H11_4093 0.76 -0.6
345,705 - Ac3H11_4093 0.76 -0.6
345,705 - Ac3H11_4093 0.76 +2.8
345,705 - Ac3H11_4093 0.76 -0.3
345,705 - Ac3H11_4093 0.76 -1.2
345,726 - Ac3H11_4093 0.76 -2.7
345,726 - Ac3H11_4093 0.76 -0.9
345,879 - Ac3H11_4093 0.82 -0.1
345,879 - Ac3H11_4093 0.82 +0.9
345,879 - Ac3H11_4093 0.82 -0.9
345,879 - Ac3H11_4093 0.82 -0.6
345,890 + Ac3H11_4093 0.82 -0.7
345,891 - Ac3H11_4093 0.82 -0.5
345,891 - Ac3H11_4093 0.82 -0.1
345,891 - Ac3H11_4093 0.82 -0.3
345,920 + Ac3H11_4093 0.83 +1.5
345,920 + Ac3H11_4093 0.83 -0.5
345,920 + Ac3H11_4093 0.83 -0.5
345,920 + Ac3H11_4093 0.83 +0.6
345,920 + Ac3H11_4093 0.83 +0.6
345,921 - Ac3H11_4093 0.84 -0.6
345,921 - Ac3H11_4093 0.84 -2.5
345,921 - Ac3H11_4093 0.84 -0.2
345,921 - Ac3H11_4093 0.84 -0.0
346,094 + Ac3H11_4093 0.90 -1.2
346,094 + Ac3H11_4093 0.90 -1.4
346,094 + Ac3H11_4093 0.90 -1.7
346,094 + Ac3H11_4093 0.90 -0.6
346,094 + Ac3H11_4093 0.90 +0.4
346,095 - Ac3H11_4093 0.90 -1.2
346,170 - -0.6
346,242 - +0.3
346,242 - -0.7
346,242 - -0.6
346,242 - -1.7
346,382 + +0.3
346,382 + +0.1
346,382 + -0.6
346,382 + -0.9
346,383 - -1.3
346,383 - +1.4
346,383 - +1.0
346,383 - -0.8
346,383 - +1.4
346,383 - -0.4
346,383 - +1.3
346,400 + +1.0
346,403 + -0.6
346,404 - +0.4
346,404 - +0.8
346,404 - +1.0
346,414 + +0.3
346,414 + -0.7
346,526 - -0.4
346,526 - -0.2
346,526 - +0.4
346,526 - +0.4
346,695 - -1.0
346,711 + +0.9
346,711 + +0.8
346,711 + +0.8
346,712 - -0.2
346,768 + -0.2
346,901 - Ac3H11_4094 0.14 -0.2
347,068 + Ac3H11_4094 0.20 +0.2
347,068 + Ac3H11_4094 0.20 +1.4
347,068 + Ac3H11_4094 0.20 +0.4
347,068 + Ac3H11_4094 0.20 -0.1
347,069 - Ac3H11_4094 0.20 +0.0
347,069 - Ac3H11_4094 0.20 -0.2
347,225 - Ac3H11_4094 0.27 +0.0
347,332 + Ac3H11_4094 0.31 +0.2
347,386 + Ac3H11_4094 0.33 -0.6
347,603 - Ac3H11_4094 0.41 -1.3
347,603 - Ac3H11_4094 0.41 -0.7
347,677 + Ac3H11_4094 0.44 -1.4
347,806 + Ac3H11_4094 0.49 -0.1
347,806 + Ac3H11_4094 0.49 +0.4
347,806 + Ac3H11_4094 0.49 -1.5
347,807 - Ac3H11_4094 0.49 -1.8
347,807 - Ac3H11_4094 0.49 -0.8
348,258 + Ac3H11_4094 0.67 -0.4
348,647 - Ac3H11_4094 0.82 -0.4
349,125 + -0.2
349,125 + +0.3
349,125 + +0.2
349,125 + -0.3
349,125 + -0.8
349,125 + +0.4
349,125 + -0.3
349,125 + -0.3
349,125 + -0.2
349,125 + -0.3
349,132 + -0.8
349,188 + Ac3H11_4095 0.15 -0.0
349,195 + Ac3H11_4095 0.16 -0.7
349,195 + Ac3H11_4095 0.16 +0.7
349,195 + Ac3H11_4095 0.16 -0.6
349,195 + Ac3H11_4095 0.16 +0.1
349,491 + Ac3H11_4095 0.63 -0.2
349,491 + Ac3H11_4095 0.63 -0.4
349,624 + Ac3H11_4095 0.84 -0.2
349,787 + -0.5
349,796 + -1.6

Or see this region's nucleotide sequence