Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3513

Experiment: Sisomicin 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3511 and Ac3H11_3512 are separated by 40 nucleotidesAc3H11_3512 and Ac3H11_3513 are separated by 345 nucleotidesAc3H11_3513 and Ac3H11_3514 are separated by 131 nucleotidesAc3H11_3514 and Ac3H11_3515 are separated by 44 nucleotides Ac3H11_3511 - FIG01198229: hypothetical protein, at 58,502 to 59,047 _3511 Ac3H11_3512 - Chromosome 3 SCAF14978, whole genome shotgun sequence, at 59,088 to 59,630 _3512 Ac3H11_3513 - Chemotaxis protein CheV (EC 2.7.3.-), at 59,976 to 60,935 _3513 Ac3H11_3514 - Antibiotic biosynthesis monooxygenase, at 61,067 to 61,369 _3514 Ac3H11_3515 - putative transcriptional regulator, LysR family, at 61,414 to 62,292 _3515 Position (kb) 59 60 61Strain fitness (log2 ratio) -2 -1 0 1 2at 59.149 kb on + strand, within Ac3H11_3512at 59.149 kb on + strand, within Ac3H11_3512at 59.149 kb on + strand, within Ac3H11_3512at 59.150 kb on - strand, within Ac3H11_3512at 59.150 kb on - strand, within Ac3H11_3512at 59.408 kb on - strand, within Ac3H11_3512at 59.408 kb on - strand, within Ac3H11_3512at 59.411 kb on - strand, within Ac3H11_3512at 59.438 kb on - strand, within Ac3H11_3512at 59.459 kb on - strand, within Ac3H11_3512at 59.476 kb on + strand, within Ac3H11_3512at 59.476 kb on + strand, within Ac3H11_3512at 59.476 kb on + strand, within Ac3H11_3512at 59.477 kb on - strand, within Ac3H11_3512at 59.477 kb on - strand, within Ac3H11_3512at 59.477 kb on - strand, within Ac3H11_3512at 59.497 kb on + strand, within Ac3H11_3512at 59.497 kb on + strand, within Ac3H11_3512at 59.497 kb on + strand, within Ac3H11_3512at 59.497 kb on + strand, within Ac3H11_3512at 59.497 kb on + strand, within Ac3H11_3512at 59.497 kb on + strand, within Ac3H11_3512at 59.498 kb on - strand, within Ac3H11_3512at 59.498 kb on - strand, within Ac3H11_3512at 59.498 kb on - strand, within Ac3H11_3512at 59.498 kb on - strand, within Ac3H11_3512at 59.498 kb on - strand, within Ac3H11_3512at 59.498 kb on - strand, within Ac3H11_3512at 59.503 kb on + strand, within Ac3H11_3512at 59.504 kb on - strand, within Ac3H11_3512at 59.504 kb on - strand, within Ac3H11_3512at 59.504 kb on - strand, within Ac3H11_3512at 59.504 kb on - strand, within Ac3H11_3512at 59.504 kb on - strand, within Ac3H11_3512at 59.518 kb on + strand, within Ac3H11_3512at 59.518 kb on + strand, within Ac3H11_3512at 59.518 kb on + strand, within Ac3H11_3512at 59.518 kb on + strand, within Ac3H11_3512at 59.518 kb on + strand, within Ac3H11_3512at 59.518 kb on + strand, within Ac3H11_3512at 59.542 kb on + strand, within Ac3H11_3512at 59.542 kb on + strand, within Ac3H11_3512at 59.542 kb on + strand, within Ac3H11_3512at 59.542 kb on + strand, within Ac3H11_3512at 59.542 kb on + strand, within Ac3H11_3512at 59.543 kb on - strand, within Ac3H11_3512at 59.543 kb on - strand, within Ac3H11_3512at 59.545 kb on + strand, within Ac3H11_3512at 59.623 kb on + strandat 59.623 kb on + strandat 59.623 kb on + strandat 59.623 kb on + strandat 59.624 kb on - strandat 59.624 kb on - strandat 59.624 kb on - strandat 59.624 kb on - strandat 59.624 kb on - strandat 59.709 kb on - strandat 59.748 kb on + strandat 59.748 kb on + strandat 59.749 kb on - strandat 59.846 kb on - strandat 59.862 kb on - strandat 59.862 kb on - strandat 59.977 kb on + strandat 59.977 kb on + strandat 59.977 kb on + strandat 59.977 kb on + strandat 59.977 kb on + strandat 59.978 kb on - strandat 59.978 kb on - strandat 59.978 kb on - strandat 59.978 kb on - strandat 60.037 kb on + strandat 60.037 kb on + strandat 60.038 kb on - strandat 60.038 kb on - strandat 60.284 kb on + strand, within Ac3H11_3513at 60.284 kb on + strand, within Ac3H11_3513at 60.284 kb on + strand, within Ac3H11_3513at 60.284 kb on + strand, within Ac3H11_3513at 60.284 kb on + strand, within Ac3H11_3513at 60.284 kb on + strand, within Ac3H11_3513at 60.284 kb on + strand, within Ac3H11_3513at 60.284 kb on + strand, within Ac3H11_3513at 60.285 kb on - strand, within Ac3H11_3513at 60.285 kb on - strand, within Ac3H11_3513at 60.285 kb on - strand, within Ac3H11_3513at 60.634 kb on + strand, within Ac3H11_3513at 60.634 kb on + strand, within Ac3H11_3513at 60.635 kb on - strand, within Ac3H11_3513at 60.963 kb on + strandat 60.964 kb on - strandat 60.974 kb on - strandat 61.011 kb on - strandat 61.011 kb on - strandat 61.033 kb on + strandat 61.033 kb on + strandat 61.033 kb on + strandat 61.034 kb on - strandat 61.122 kb on + strand, within Ac3H11_3514at 61.122 kb on + strand, within Ac3H11_3514at 61.122 kb on + strand, within Ac3H11_3514at 61.122 kb on + strand, within Ac3H11_3514at 61.122 kb on + strand, within Ac3H11_3514at 61.122 kb on + strand, within Ac3H11_3514at 61.123 kb on - strand, within Ac3H11_3514at 61.123 kb on - strand, within Ac3H11_3514at 61.136 kb on + strand, within Ac3H11_3514at 61.136 kb on + strand, within Ac3H11_3514at 61.136 kb on + strand, within Ac3H11_3514at 61.136 kb on + strand, within Ac3H11_3514at 61.136 kb on + strand, within Ac3H11_3514at 61.136 kb on + strand, within Ac3H11_3514at 61.136 kb on + strand, within Ac3H11_3514at 61.136 kb on + strand, within Ac3H11_3514at 61.137 kb on - strand, within Ac3H11_3514at 61.137 kb on - strand, within Ac3H11_3514at 61.137 kb on - strand, within Ac3H11_3514at 61.137 kb on - strand, within Ac3H11_3514at 61.137 kb on - strand, within Ac3H11_3514at 61.137 kb on - strand, within Ac3H11_3514at 61.137 kb on - strand, within Ac3H11_3514at 61.137 kb on - strand, within Ac3H11_3514at 61.155 kb on + strand, within Ac3H11_3514at 61.156 kb on - strand, within Ac3H11_3514at 61.217 kb on + strand, within Ac3H11_3514at 61.217 kb on + strand, within Ac3H11_3514at 61.217 kb on + strand, within Ac3H11_3514at 61.217 kb on + strand, within Ac3H11_3514at 61.217 kb on + strand, within Ac3H11_3514at 61.217 kb on + strand, within Ac3H11_3514at 61.217 kb on + strand, within Ac3H11_3514at 61.217 kb on + strand, within Ac3H11_3514at 61.217 kb on + strand, within Ac3H11_3514at 61.217 kb on + strand, within Ac3H11_3514at 61.217 kb on + strand, within Ac3H11_3514at 61.217 kb on + strand, within Ac3H11_3514at 61.217 kb on + strand, within Ac3H11_3514at 61.217 kb on + strand, within Ac3H11_3514at 61.217 kb on + strand, within Ac3H11_3514at 61.217 kb on + strand, within Ac3H11_3514at 61.217 kb on + strand, within Ac3H11_3514at 61.218 kb on - strand, within Ac3H11_3514at 61.218 kb on - strand, within Ac3H11_3514at 61.218 kb on - strand, within Ac3H11_3514at 61.218 kb on - strand, within Ac3H11_3514at 61.218 kb on - strand, within Ac3H11_3514at 61.218 kb on - strand, within Ac3H11_3514at 61.218 kb on - strand, within Ac3H11_3514at 61.218 kb on - strand, within Ac3H11_3514at 61.218 kb on - strand, within Ac3H11_3514at 61.218 kb on - strand, within Ac3H11_3514at 61.218 kb on - strand, within Ac3H11_3514at 61.218 kb on - strand, within Ac3H11_3514at 61.218 kb on - strand, within Ac3H11_3514at 61.218 kb on - strand, within Ac3H11_3514at 61.218 kb on - strand, within Ac3H11_3514at 61.218 kb on - strand, within Ac3H11_3514at 61.221 kb on + strand, within Ac3H11_3514at 61.221 kb on + strand, within Ac3H11_3514at 61.221 kb on + strand, within Ac3H11_3514at 61.221 kb on + strand, within Ac3H11_3514at 61.221 kb on + strand, within Ac3H11_3514at 61.221 kb on + strand, within Ac3H11_3514at 61.222 kb on - strand, within Ac3H11_3514at 61.222 kb on - strand, within Ac3H11_3514at 61.222 kb on - strand, within Ac3H11_3514at 61.222 kb on - strand, within Ac3H11_3514at 61.222 kb on - strand, within Ac3H11_3514at 61.222 kb on - strand, within Ac3H11_3514at 61.222 kb on - strand, within Ac3H11_3514at 61.266 kb on + strand, within Ac3H11_3514at 61.266 kb on + strand, within Ac3H11_3514at 61.267 kb on - strand, within Ac3H11_3514at 61.832 kb on + strand, within Ac3H11_3515at 61.832 kb on + strand, within Ac3H11_3515at 61.832 kb on + strand, within Ac3H11_3515at 61.833 kb on - strand, within Ac3H11_3515at 61.833 kb on - strand, within Ac3H11_3515at 61.833 kb on - strand, within Ac3H11_3515at 61.833 kb on - strand, within Ac3H11_3515

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.0005 mg/ml
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59,149 + Ac3H11_3512 0.11 -0.5
59,149 + Ac3H11_3512 0.11 -0.4
59,149 + Ac3H11_3512 0.11 +0.6
59,150 - Ac3H11_3512 0.11 -0.1
59,150 - Ac3H11_3512 0.11 -0.1
59,408 - Ac3H11_3512 0.59 -0.6
59,408 - Ac3H11_3512 0.59 -0.5
59,411 - Ac3H11_3512 0.59 -0.1
59,438 - Ac3H11_3512 0.64 -0.4
59,459 - Ac3H11_3512 0.68 -1.3
59,476 + Ac3H11_3512 0.71 -0.4
59,476 + Ac3H11_3512 0.71 +0.7
59,476 + Ac3H11_3512 0.71 -0.9
59,477 - Ac3H11_3512 0.72 +0.7
59,477 - Ac3H11_3512 0.72 +0.8
59,477 - Ac3H11_3512 0.72 +0.5
59,497 + Ac3H11_3512 0.75 +0.0
59,497 + Ac3H11_3512 0.75 +0.6
59,497 + Ac3H11_3512 0.75 -0.4
59,497 + Ac3H11_3512 0.75 +0.6
59,497 + Ac3H11_3512 0.75 -1.4
59,497 + Ac3H11_3512 0.75 +0.3
59,498 - Ac3H11_3512 0.76 -0.5
59,498 - Ac3H11_3512 0.76 -1.5
59,498 - Ac3H11_3512 0.76 +1.3
59,498 - Ac3H11_3512 0.76 +0.8
59,498 - Ac3H11_3512 0.76 -0.1
59,498 - Ac3H11_3512 0.76 +0.3
59,503 + Ac3H11_3512 0.76 -0.5
59,504 - Ac3H11_3512 0.77 -1.0
59,504 - Ac3H11_3512 0.77 -1.9
59,504 - Ac3H11_3512 0.77 +0.3
59,504 - Ac3H11_3512 0.77 +0.1
59,504 - Ac3H11_3512 0.77 -0.5
59,518 + Ac3H11_3512 0.79 +0.1
59,518 + Ac3H11_3512 0.79 -0.3
59,518 + Ac3H11_3512 0.79 -0.3
59,518 + Ac3H11_3512 0.79 -0.4
59,518 + Ac3H11_3512 0.79 +0.4
59,518 + Ac3H11_3512 0.79 +2.2
59,542 + Ac3H11_3512 0.84 -0.6
59,542 + Ac3H11_3512 0.84 +0.3
59,542 + Ac3H11_3512 0.84 -0.9
59,542 + Ac3H11_3512 0.84 +1.4
59,542 + Ac3H11_3512 0.84 -1.6
59,543 - Ac3H11_3512 0.84 +0.5
59,543 - Ac3H11_3512 0.84 +0.9
59,545 + Ac3H11_3512 0.84 +1.0
59,623 + -0.1
59,623 + -0.0
59,623 + +0.3
59,623 + -0.4
59,624 - +0.4
59,624 - -1.2
59,624 - -0.5
59,624 - +0.3
59,624 - +0.2
59,709 - -0.0
59,748 + -0.1
59,748 + -0.4
59,749 - -0.3
59,846 - -1.1
59,862 - -0.1
59,862 - +1.3
59,977 + -0.7
59,977 + -0.2
59,977 + -0.9
59,977 + -0.9
59,977 + -0.1
59,978 - +0.4
59,978 - +1.0
59,978 - -0.8
59,978 - -0.4
60,037 + -0.5
60,037 + +0.1
60,038 - -0.8
60,038 - -0.0
60,284 + Ac3H11_3513 0.32 -0.2
60,284 + Ac3H11_3513 0.32 -0.5
60,284 + Ac3H11_3513 0.32 -0.6
60,284 + Ac3H11_3513 0.32 +0.4
60,284 + Ac3H11_3513 0.32 +0.1
60,284 + Ac3H11_3513 0.32 -1.2
60,284 + Ac3H11_3513 0.32 +0.5
60,284 + Ac3H11_3513 0.32 +0.1
60,285 - Ac3H11_3513 0.32 -0.1
60,285 - Ac3H11_3513 0.32 -0.8
60,285 - Ac3H11_3513 0.32 -1.1
60,634 + Ac3H11_3513 0.69 -0.3
60,634 + Ac3H11_3513 0.69 -0.6
60,635 - Ac3H11_3513 0.69 +0.5
60,963 + -0.5
60,964 - +0.9
60,974 - +0.4
61,011 - +0.9
61,011 - -0.8
61,033 + -0.9
61,033 + -0.1
61,033 + +0.0
61,034 - +0.3
61,122 + Ac3H11_3514 0.18 -1.1
61,122 + Ac3H11_3514 0.18 -0.0
61,122 + Ac3H11_3514 0.18 +0.4
61,122 + Ac3H11_3514 0.18 -0.3
61,122 + Ac3H11_3514 0.18 -0.2
61,122 + Ac3H11_3514 0.18 -0.4
61,123 - Ac3H11_3514 0.18 +0.6
61,123 - Ac3H11_3514 0.18 +0.4
61,136 + Ac3H11_3514 0.23 +0.3
61,136 + Ac3H11_3514 0.23 +0.1
61,136 + Ac3H11_3514 0.23 -1.8
61,136 + Ac3H11_3514 0.23 +0.3
61,136 + Ac3H11_3514 0.23 +0.8
61,136 + Ac3H11_3514 0.23 -1.1
61,136 + Ac3H11_3514 0.23 -0.1
61,136 + Ac3H11_3514 0.23 -0.1
61,137 - Ac3H11_3514 0.23 -0.2
61,137 - Ac3H11_3514 0.23 -0.8
61,137 - Ac3H11_3514 0.23 +0.5
61,137 - Ac3H11_3514 0.23 -0.9
61,137 - Ac3H11_3514 0.23 -1.0
61,137 - Ac3H11_3514 0.23 +0.4
61,137 - Ac3H11_3514 0.23 +0.9
61,137 - Ac3H11_3514 0.23 +0.8
61,155 + Ac3H11_3514 0.29 -0.6
61,156 - Ac3H11_3514 0.29 -0.6
61,217 + Ac3H11_3514 0.50 -0.4
61,217 + Ac3H11_3514 0.50 +0.5
61,217 + Ac3H11_3514 0.50 -0.6
61,217 + Ac3H11_3514 0.50 -0.0
61,217 + Ac3H11_3514 0.50 -0.7
61,217 + Ac3H11_3514 0.50 +0.2
61,217 + Ac3H11_3514 0.50 +0.0
61,217 + Ac3H11_3514 0.50 -2.4
61,217 + Ac3H11_3514 0.50 -1.4
61,217 + Ac3H11_3514 0.50 -0.2
61,217 + Ac3H11_3514 0.50 -0.4
61,217 + Ac3H11_3514 0.50 -0.0
61,217 + Ac3H11_3514 0.50 -0.1
61,217 + Ac3H11_3514 0.50 -0.1
61,217 + Ac3H11_3514 0.50 -0.7
61,217 + Ac3H11_3514 0.50 -1.3
61,217 + Ac3H11_3514 0.50 +0.4
61,218 - Ac3H11_3514 0.50 -0.2
61,218 - Ac3H11_3514 0.50 -0.1
61,218 - Ac3H11_3514 0.50 +0.5
61,218 - Ac3H11_3514 0.50 -0.0
61,218 - Ac3H11_3514 0.50 +0.9
61,218 - Ac3H11_3514 0.50 +1.1
61,218 - Ac3H11_3514 0.50 +0.1
61,218 - Ac3H11_3514 0.50 +1.0
61,218 - Ac3H11_3514 0.50 -1.0
61,218 - Ac3H11_3514 0.50 +0.1
61,218 - Ac3H11_3514 0.50 +1.2
61,218 - Ac3H11_3514 0.50 +0.8
61,218 - Ac3H11_3514 0.50 +0.0
61,218 - Ac3H11_3514 0.50 +0.3
61,218 - Ac3H11_3514 0.50 +0.7
61,218 - Ac3H11_3514 0.50 -1.1
61,221 + Ac3H11_3514 0.51 -0.8
61,221 + Ac3H11_3514 0.51 +0.1
61,221 + Ac3H11_3514 0.51 -1.2
61,221 + Ac3H11_3514 0.51 +0.3
61,221 + Ac3H11_3514 0.51 +1.3
61,221 + Ac3H11_3514 0.51 -0.3
61,222 - Ac3H11_3514 0.51 +1.1
61,222 - Ac3H11_3514 0.51 -0.6
61,222 - Ac3H11_3514 0.51 +0.8
61,222 - Ac3H11_3514 0.51 +0.8
61,222 - Ac3H11_3514 0.51 -0.1
61,222 - Ac3H11_3514 0.51 +0.7
61,222 - Ac3H11_3514 0.51 -0.5
61,266 + Ac3H11_3514 0.66 +0.8
61,266 + Ac3H11_3514 0.66 -0.2
61,267 - Ac3H11_3514 0.66 +1.9
61,832 + Ac3H11_3515 0.48 -0.2
61,832 + Ac3H11_3515 0.48 -0.4
61,832 + Ac3H11_3515 0.48 +0.7
61,833 - Ac3H11_3515 0.48 +0.3
61,833 - Ac3H11_3515 0.48 -0.5
61,833 - Ac3H11_3515 0.48 +0.7
61,833 - Ac3H11_3515 0.48 +0.3

Or see this region's nucleotide sequence